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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0282
Library FC-IC
(Link to library)
Clone ID FC-IC0282
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16527-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>FC-IC0282 (FC-IC0282Q) /CSM/FC-IC/FC-IC0282Q.Seq.d/
CCATATTTAATAAGGTAACGAGATTCAAGTGCTGCACTACTAGCAAATGCCCAACATGAT
CCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAAGTCCAATCTACTGTAAGAGTT
GATGTTGGGGCTGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTGGT
GTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGGTTGGAGCTGGT
GTTGTTGGTTTTGGAGTAGTTGGAGCTGGTGTGGTTGGTTTTGGTGTGGTTGGAGCTGGT
GTAGTTGGAGCTGGGGTTGTTGTTTTTGGAGTATAAGGAAGAACACCCTTAAATCCACCT
GCTGGGTAATATGAACATGAAACTTCAGATTTATCTGGACATATTGTCTTTGCGCAACCA
TATGAAGT
sequence update 2001. 6.24
Translated Amino Acid sequence 
pylir*rdssaallanaqhdphcp*SLIGVWYEVQSTVRVDVGAGVVGAGVVGFGVVGAG
VVGFGVVGAGVVGFGVVGAGVVGFGVVGAGVVGFGVVGAGVVGAGVVVFGV*grtplnpp
ag*yehetsdlsghivfaqpye
Translated Amino Acid sequence (All Frames) 
Frame A:
pylir*rdssaallanaqhdphcp*SLIGVWYEVQSTVRVDVGAGVVGAGVVGFGVVGAG
VVGFGVVGAGVVGFGVVGAGVVGFGVVGAGVVGFGVVGAGVVGAGVVVFGV*grtplnpp
ag*yehetsdlsghivfaqpye


Frame B:
hi**gneiqvlhy*qmpnmirivldlllefgmksnll*elmlglvllglvllvle*lelv
wlvlewlelvllvlgwlelvllvle*lelvwlvlvwlelv*lelgllfleykeehp*ihl
lgnmnmklqiyldilslrnhmk


Frame C:
ifnkvtrfkccttskcpt*salslisywslv*spiycks*cwgwccwgwccwfwsswswc
gwfwsgwswccwfwggwswccwfwsswswcgwfwcgwswcswswgccfwsirkntlkstc
wvi*t*nfrfiwtyclcati*s
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1760 (FC-IC1760Q) /CSM/FC-IC/FC-IC1760Q.Seq.d/                   256   2e-67
FC-IC1748 (FC-IC1748Q) /CSM/FC-IC/FC-IC1748Q.Seq.d/                   256   2e-67
FC-IC1665 (FC-IC1665Q) /CSM/FC-IC/FC-IC1665Q.Seq.d/                   256   2e-67
FC-IC1648 (FC-IC1648Q) /CSM/FC-IC/FC-IC1648Q.Seq.d/                   256   2e-67
FC-IC1642 (FC-IC1642Q) /CSM/FC-IC/FC-IC1642Q.Seq.d/                   256   2e-67
FC-IC1631 (FC-IC1631Q) /CSM/FC-IC/FC-IC1631Q.Seq.d/                   256   2e-67
FC-IC1622 (FC-IC1622Q) /CSM/FC-IC/FC-IC1622Q.Seq.d/                   256   2e-67
FC-IC1583 (FC-IC1583Q) /CSM/FC-IC/FC-IC1583Q.Seq.d/                   256   2e-67
FC-IC1527 (FC-IC1527Q) /CSM/FC-IC/FC-IC1527Q.Seq.d/                   256   2e-67
FC-IC1523 (FC-IC1523Q) /CSM/FC-IC/FC-IC1523Q.Seq.d/                   256   2e-67
own update 2001.11.18
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB088483|AB088483.1 Dictyostelium discoideum gene for gamete and mating-type specific protein A, complete cds.   216   e-114  3
AZ686636|AZ686636.1 ENTFZ42TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    60   3e-05  1
M94163|M94163.1 Entamoeba histolytica (clone gEh-CPp2) cysteine proteinase (CPp2) gene, complete cds.    60   3e-05  1
U28755|U28755.1 Entamoeba invadens cysteine proteinase gene, partial cds.    60   3e-05  1
BH165563|BH165563.1 ENTSB84TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    60   3e-05  1
AZ535019|AZ535019.1 ENTBP24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    58   1e-04  1
S58670|S58670.1 ACP2=cysteine proteinase [Entamoeba histolytica, HM-1, Genomic/mRNA, 933 nt].    52   0.006  1
CD451153|CD451153.1 USDA-FP_103216 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-42_H04 5', mRNA sequence.    52   0.006  1
BQ099284|BQ099284.1 ph28f10.y2 Ostertagia ostertagi L3 pAMP1 v1 Ostertagia ostertagi cDNA 5' similar to TR:O45734 O45734 T03E6.7 PROTEIN. [1] ;, mRNA sequence.    48   0.097  1
CB398740|CB398740.1 OSTR208E2_2 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence.    48   0.097  1
dna update 2003.12.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB088483_1(AB088483|pid:none) Dictyostelium discoideum gmsA gene...    88   8e-17
BC080004_1(BC080004|pid:none) Xenopus laevis MGC81823 protein, m...    53   4e-06
AY126275_28(AY126275|pid:none) Mamestra configurata nucleopolyhe...    53   4e-06
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...    52   5e-06
FJ807676_1(FJ807676|pid:none) Dicentrarchus labrax cathepsin L m...    52   7e-06
DQ123841_19(DQ123841|pid:none) Agrotis segetum nucleopolyhedrovi...    52   7e-06
BT050087_1(BT050087|pid:none) Salmo salar clone ssal-evd-563-114...    52   7e-06
DQ017380_62(DQ017380|pid:none) Trichoplusia ni single nucleopoly...    52   9e-06
KHCHL(S00081;A25654;A26818;B25654)cathepsin L (EC 3.4.22.15) - c...    52   9e-06
AY864330_64(AY864330|pid:none) Chrysodeixis chalcites nucleopoly...    52   9e-06
protein update 2009. 7. 1
PSORT 

 psg: 0.75  gvh: 0.51  alm: 0.25  top: 0.60  tms: 0.20  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 16.0 %: plasma membrane
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for FC-IC0282 is end
5' end seq. ID FC-IC0282F
5' end seq. 
>FC-IC0282F.Seq
ACCATATTTAATAAGGTAACGAGATTCAAGTGCTGCACTACTAGCAAATGCCCAACATGA
TCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAAGTCCAATCTACTGTAAGAGT
TGATGTTGGGGCTGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTGG
TGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGGTTGGAGCTGG
TGTTGNNNNNNNNNN
Length of 5' end seq. 255
3' end seq. ID FC-IC0282Z
3' end seq. 
>FC-IC0282Z.Seq
----------NCCATATTTAATAAGGTAACGAGATTCAAGTGCTGCACTACTAGCAAATG
CCCAACATGATCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAAGTCCAATCTA
CTGTAAGAGTTGATGTTGGGGCTGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAG
TTGGAGCTGGTGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGG
TTGGAGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTGGTGTGGTTGGTTTTGGTGTGG
TTGGAGCTGGTGTAGTTGGAGCTGGGGTTGTTGTTTTTGGAGTATAAGGAAGAACACCCT
TAAATCCACCTGCTGGGTAATATGAACATGAAACTTCAGATTTATCTGGACATATTGTCT
TTGCGCAACCATATGAAGT
Length of 3' end seq. 429
Connected seq. ID FC-IC0282P
Connected seq. 
>FC-IC0282P.Seq
ACCATATTTAATAAGGTAACGAGATTCAAGTGCTGCACTACTAGCAAATGCCCAACATGA
TCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAAGTCCAATCTACTGTAAGAGT
TGATGTTGGGGCTGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTGG
TGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGGTTGGAGCTGG
TGTTG----------CCATATTTAATAAGGTAACGAGATTCAAGTGCTGCACTACTAGCA
AATGCCCAACATGATCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAAGTCCAA
TCTACTGTAAGAGTTGATGTTGGGGCTGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGA
GTAGTTGGAGCTGGTGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGG
GTGGTTGGAGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTGGTGTGGTTGGTTTTGGT
GTGGTTGGAGCTGGTGTAGTTGGAGCTGGGGTTGTTGTTTTTGGAGTATAAGGAAGAACA
CCCTTAAATCCACCTGCTGGGTAATATGAACATGAAACTTCAGATTTATCTGGACATATT
GTCTTTGCGCAACCATATGAAGT
Length of connected seq. 673
Full length Seq ID FC-IC0282E
Full length Seq. 
>FC-IC0282E.Seq
NCCATATTTAATAAGGTAACGAGATTCAAGTGCTGCACTACTAGCAAATGCCCAACATGA
TCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAAGTCCAATCTACTGTAAGAGT
TGATGTTGGGGCTGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTGG
TGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGGTTGGAGCTGG
TGTTGTTGGTTTTGGAGTAGTTGGAGCTGGTGTGGTTGGTTTTGGTGTGGTTGGAGCTGG
TGTAGTTGGAGCTGGGGTTGTTGTTTTTGGAGTATAAGGAAGAACACCCTTAAATCCACC
TGCTGGGTAATATGAACATGAAACTTCAGATTTATCTGGACATATTGTCTTTGCGCAACC
ATATGAAGT
Length of full length seq. 429