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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0255
Library FC-IC
(Link to library)
Clone ID FC-IC0255
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11160-1
Original site URL
Representative seq. ID FC-IC0255E
(Link to Original site)
Representative DNA sequence 
>FC-IC0255 (FC-IC0255Q) /CSM/FC-IC/FC-IC0255Q.Seq.d/
ACCACAAAATCCTTGATCAATCCGCTGGTCTTAGAGATGCATTGGCAAAAACCCTATATG
AACGTATTTTCGATTTCATTGTAGCTCGTGTTAACAAGGCAATGTCTTTCAGTGGAAATT
GCAAGGTCATTGGTGTTTTGGATATCTATGGTTTCGAAGTATTTGAACGTAACTCTTTTG
AACAATTTTGTATCAATTATGTCAATGAACGTCTTCAACAGATCTTTATTGATCTTACAG
TTCGTGGTGAACAACGTGAGTATCATGAAGAGGGTATGAAATGGAAGGATATCAGTTTCT
TTGATAATAAAATTGTAGTAGATCTTATCGATGGAAATAAACCACCTGGTATCATGAGAG
TTTTAGATGACGTTTGTAAAACGGTTCATGCTGTCGATAGTGCCGCTGCAGATATTAAAT
TCATGGAGAAATTAATTCACTCCATTCAAAGTCATCCCCATTTAGTCATTTCAAATACTG
GTTCCTCTGCTGATGAATTCACAATCAAACATTATGCCGGTGAAGTATCTTATTCAATAG
AAGAGTTTTGTTTCAAAAATAATGATAACCTTTACGCTTCAATCGTTGGTTGTCTTCAAA
ATTCAACCTATCAATTCATCGTATCTTTGTTCCCTGAAAATATTCAAGATAATAAACAAG
CTCCTACCACTTCAAGTTTCAAAATTCGTCAATCTTCAAGTTATTTAGTAACTCGTTTAT
CCGCTTGT
sequence update 2001.11.10
Translated Amino Acid sequence 
HKILDQSAGLRDALAKTLYERIFDFIVARVNKAMSFSGNCKVIGVLDIYGFEVFERNSFE
QFCINYVNERLQQIFIDLTVRGEQREYHEEGMKWKDISFFDNKIVVDLIDGNKPPGIMRV
LDDVCKTVHAVDSAAADIKFMEKLIHSIQSHPHLVISNTGSSADEFTIKHYAGEVSYSIE
EFCFKNNDNLYASIVGCLQNSTYQFIVSLFPENIQDNKQAPTTSSFKIRQSSSYLVTRLS
AC
Translated Amino Acid sequence (All Frames) 
Frame A:
ttkslinplvlemhwqkpymnvfsisl*lvltrqclsveiarslvfwismvskylnvtll
nnfvsimsmnvfnrsllilqfvvnnvsimkrv*ngrisvsliikl**ilsmeinhlvs*e
f*mtfvkrfmlsivplqilnswrn*ftpfkvipi*sfqilvpllmnsqsnimpvkyliq*
ksfvskimitftlqslvvfkiqpinssylcslkifkiinkllplqvskfvnlqvi**lvy
pl


Frame B:
pqnp*sirws*rcigknpi*tyfrfhcssc*qgnvfqwklqghwcfgylwfrsi*t*lf*
tilyqlcq*tsstdly*syssw*tt*vs*rgyemegyqfl***ncsrsyrwk*ttwyhes
fr*rl*ngsccr*crcry*ihgeinslhsksspfshfkywflc**ihnqtlcr*silfnr
rvlfqk***plrfnrwlsskfnlsihrifvp*kysr**tssyhfkfqnssifklfsnsfi
rl


Frame C:
HKILDQSAGLRDALAKTLYERIFDFIVARVNKAMSFSGNCKVIGVLDIYGFEVFERNSFE
QFCINYVNERLQQIFIDLTVRGEQREYHEEGMKWKDISFFDNKIVVDLIDGNKPPGIMRV
LDDVCKTVHAVDSAAADIKFMEKLIHSIQSHPHLVISNTGSSADEFTIKHYAGEVSYSIE
EFCFKNNDNLYASIVGCLQNSTYQFIVSLFPENIQDNKQAPTTSSFKIRQSSSYLVTRLS
AC
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0255 (FC-IC0255Q) /CSM/FC-IC/FC-IC0255Q.Seq.d/                  1443   0.0
FC-IC0292 (FC-IC0292Q) /CSM/FC-IC/FC-IC0292Q.Seq.d/                  1366   0.0
FC-IC0151 (FC-IC0151Q) /CSM/FC-IC/FC-IC0151Q.Seq.d/                  1084   0.0
VHA179 (VHA179Q) /CSM/VH/VHA1-D/VHA179Q.Seq.d/                        920   0.0
SHK695 (SHK695Q) /CSM/SH/SHK6-D/SHK695Q.Seq.d/                        724   0.0
VHP334 (VHP334Q) /CSM/VH/VHP3-B/VHP334Q.Seq.d/                        646   0.0
VHI814 (VHI814Q) /CSM/VH/VHI8-A/VHI814Q.Seq.d/                        478   e-134
AHA803 (AHA803Q) /CSM/AH/AHA8-A/AHA803Q.Seq.d/                        478   e-134
VHE382 (VHE382Q) /CSM/VH/VHE3-D/VHE382Q.Seq.d/                        476   e-133
VHD445 (VHD445Q) /CSM/VH/VHD4-B/VHD445Q.Seq.d/                        466   e-130
own update 2002.10. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1417   0.0    1
AB017909|AB017909.1 Dictyostelium discoideum myoK gene, complete cds.  1417   0.0    1
AF090534|AF090534.1 Dictyostelium discoideum unconventional myosin heavy chain MyoK (myoK) mRNA, complete cds.  1386   0.0    1
S73909|S73909.1 abmA=actin-based motor [Dictyostelium, Genomic, 3402 nt].    64   8e-14  2
CD566531|CD566531.1 tac06g07.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to TR:O00160 O00160 MYOSIN-IE ;, mRNA sequence.    42   5e-12  4
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    52   6e-11  2
L16509|L16509.1 Dictyostelium discoideum mRNA sequence.            52   7e-11  2
BX538352|BX538352.1 Cryptosporidium parvum chromosome 6, complete sequence; segment 3/4.    76   8e-10  1
AQ254271|AQ254271.1 CpG0737A CpIOWAgDNA1 Cryptosporidium parvum genomic similar to H. annuus unconventional myosin, genomic survey sequence.    76   8e-10  1
L35323|L35323.1 Dictyostelium discoideum myosin IC (myoC) gene, complete cds.    58   8e-10  4
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_52(AC116986|pid:none) Dictyostelium discoideum chromoso...   479   e-134
JG0183(JG0183)myosin Myok - Dictyostelium discoideum                  479   e-134
AF090534_1(AF090534|pid:none) Dictyostelium discoideum unconvent...   476   e-133
(P19706) RecName: Full=Myosin heavy chain IB; AltName: Full=Myos...   237   3e-61
MWAXIB(JQ0095;B34448)myosin heavy chain IB - Acanthamoeba castel...   237   3e-61
BC051391_1(BC051391|pid:none) Mus musculus myosin IE, mRNA (cDNA...   235   1e-60
AK029145_1(AK029145|pid:none) Mus musculus 10 days neonate skin ...   235   1e-60
(Q12965) RecName: Full=Myosin-Ie; AltName: Full=Myosin-Ic;  &AB2...   235   1e-60
AF248488_1(AF248488|pid:none) Strongylocentrotus purpuratus amoe...   234   2e-60
S31926(S31926) myosin IB heavy chain, brush border - chicken  &X...   232   1e-59
protein update 2009. 7. 1
PSORT 

 psg: 0.66  gvh: 0.48  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for FC-IC0255 is cyt
5' end seq. ID FC-IC0255F
5' end seq. 
>FC-IC0255F.Seq
ACCACAAAATCCTGATCAATCCGCTGGTCTTAGAGATGCATTGGCAAAAACCCTATATGA
ACGTATTTTCGATTTCATTGTAGCTCGTGTTAACAAGGCAATGTCTTTCAGTGGAAATTG
CAAGGTCATTGGTGTTTTGGATATCTATGGTTTCGAAGTATTTGAACGTAACTCTTTTGA
ACAATTTTGTATCAATTATGTCAATGAACGTCTTCAACAGATCTTTATTGATCTTACAGT
TCGTGGTGAACAACGTGAGTATCATGAAGAGGGTATGAAATGGAAGGATATCAGTTTCTT
TGATAATAAAATTGTAGTAGATCTTATCGATGGAAATAAACCACCTGGTATCATGAGAGT
TTTAGATGACGTTTGTAAAACGGTTCATGCTGTCGATAGTGCCGCTGCAGATATTAAATT
CATGGAGAAATTAATTCACTCCATTCAAAGTCATCCCCATTTAGTCATTTCAAATACTGG
TTCCTCTGCTGATGAATTCACAATCAAACATTATGCCGGTGAAGTATCTTATTCAATAGA
AGAGTTTTGTTTCAAAAATAATGATAACCTTTACGCTTCAATCGTTGGTTGTCTTCAAAA
TTCAACCTATCAATTCATCGTATCTTTGNTCCCTGAAAATATTCAAGATAATNAACAAGC
TCCTACCACTTCAAGTTTCAAAATTCGTCAATCTTCAAGTTATTTAGTAACTCGTTTATC
CGCTTGTNNNNNNNNNN
Length of 5' end seq. 737
3' end seq. ID FC-IC0255Z
3' end seq. 
>FC-IC0255Z.Seq
NNNNNNNNNNACCACAAAATCCTTGATCAATCCGCTGGTNTNAGAGATGCATTGGCAAAA
ACCCTATATGAACGTATTTTCGATTTCATTGTAGCTCGTGTTAACAAGNCAATGTCTTTC
AGTGGAAATTGCAAGGTCATTGGTGTTTTGGATATCTATGGTTTCGAAGTATTTGAACGT
AACTCTTTTGAACAATTTTGTATCAATTATGTCAATGAACGTCTTCAACAGATCTTTATT
GATCTTACAGTTCGTGGTGAACAACGTGAGTATCATGAAGAGGGTATGAAATGGAAGGAT
ATCAGTTTCTTTGATAATAAAATTGTAGTAGATCTTATCGATGGAAATAAACCACCTGGT
ATCATGAGAGTTTTAGATGACGTTTGTAAAACGGTTCATGCTGTCGATAGTGCCGCTGCA
GATATTAAATTCATGGAGAAATTAATTCACTCCATTCAAAGTCATCCCCATTTAGTCATT
TCAAATACTGGTTCCTCTGCTGATGAATTCACAATCAAACATTATGCCGGTGAAGTATCT
TATTCAATAGAAGAGTTTTGTTTCAAAAATAATGATAACCTTTACGCTTCAATCGTTGGT
TGTCTTCAAAATTCAACCTATCAATTCATCGTATCTTTGTTCCCTGAAAATATTCAAGAT
AATAAACAAGCTCCTACCACTTCAAGTTTCAAAATTCGTCAATCTTCAAGTTATTTAGTA
ACTCGTTTATCCGCTTGT
Length of 3' end seq. 738
Connected seq. ID FC-IC0255P
Connected seq. 
>FC-IC0255P.Seq
ACCACAAAATCCTGATCAATCCGCTGGTCTTAGAGATGCATTGGCAAAAACCCTATATGA
ACGTATTTTCGATTTCATTGTAGCTCGTGTTAACAAGGCAATGTCTTTCAGTGGAAATTG
CAAGGTCATTGGTGTTTTGGATATCTATGGTTTCGAAGTATTTGAACGTAACTCTTTTGA
ACAATTTTGTATCAATTATGTCAATGAACGTCTTCAACAGATCTTTATTGATCTTACAGT
TCGTGGTGAACAACGTGAGTATCATGAAGAGGGTATGAAATGGAAGGATATCAGTTTCTT
TGATAATAAAATTGTAGTAGATCTTATCGATGGAAATAAACCACCTGGTATCATGAGAGT
TTTAGATGACGTTTGTAAAACGGTTCATGCTGTCGATAGTGCCGCTGCAGATATTAAATT
CATGGAGAAATTAATTCACTCCATTCAAAGTCATCCCCATTTAGTCATTTCAAATACTGG
TTCCTCTGCTGATGAATTCACAATCAAACATTATGCCGGTGAAGTATCTTATTCAATAGA
AGAGTTTTGTTTCAAAAATAATGATAACCTTTACGCTTCAATCGTTGGTTGTCTTCAAAA
TTCAACCTATCAATTCATCGTATCTTTGNTCCCTGAAAATATTCAAGATAATNAACAAGC
TCCTACCACTTCAAGTTTCAAAATTCGTCAATCTTCAAGTTATTTAGTAACTCGTTTATC
CGCTTGT----------ACCACAAAATCCTTGATCAATCCGCTGGTNTNAGAGATGCATT
GGCAAAAACCCTATATGAACGTATTTTCGATTTCATTGTAGCTCGTGTTAACAAGNCAAT
GTCTTTCAGTGGAAATTGCAAGGTCATTGGTGTTTTGGATATCTATGGTTTCGAAGTATT
TGAACGTAACTCTTTTGAACAATTTTGTATCAATTATGTCAATGAACGTCTTCAACAGAT
CTTTATTGATCTTACAGTTCGTGGTGAACAACGTGAGTATCATGAAGAGGGTATGAAATG
GAAGGATATCAGTTTCTTTGATAATAAAATTGTAGTAGATCTTATCGATGGAAATAAACC
ACCTGGTATCATGAGAGTTTTAGATGACGTTTGTAAAACGGTTCATGCTGTCGATAGTGC
CGCTGCAGATATTAAATTCATGGAGAAATTAATTCACTCCATTCAAAGTCATCCCCATTT
AGTCATTTCAAATACTGGTTCCTCTGCTGATGAATTCACAATCAAACATTATGCCGGTGA
AGTATCTTATTCAATAGAAGAGTTTTGTTTCAAAAATAATGATAACCTTTACGCTTCAAT
CGTTGGTTGTCTTCAAAATTCAACCTATCAATTCATCGTATCTTTGTTCCCTGAAAATAT
TCAAGATAATAAACAAGCTCCTACCACTTCAAGTTTCAAAATTCGTCAATCTTCAAGTTA
TTTAGTAACTCGTTTATCCGCTTGT
Length of connected seq. 1455
Full length Seq ID FC-IC0255E
Full length Seq. 
>FC-IC0255E.Seq
ACCACAAAATCCTTGATCAATCCGCTGGTCTTAGAGATGCATTGGCAAAAACCCTATATG
AACGTATTTTCGATTTCATTGTAGCTCGTGTTAACAAGGCAATGTCTTTCAGTGGAAATT
GCAAGGTCATTGGTGTTTTGGATATCTATGGTTTCGAAGTATTTGAACGTAACTCTTTTG
AACAATTTTGTATCAATTATGTCAATGAACGTCTTCAACAGATCTTTATTGATCTTACAG
TTCGTGGTGAACAACGTGAGTATCATGAAGAGGGTATGAAATGGAAGGATATCAGTTTCT
TTGATAATAAAATTGTAGTAGATCTTATCGATGGAAATAAACCACCTGGTATCATGAGAG
TTTTAGATGACGTTTGTAAAACGGTTCATGCTGTCGATAGTGCCGCTGCAGATATTAAAT
TCATGGAGAAATTAATTCACTCCATTCAAAGTCATCCCCATTTAGTCATTTCAAATACTG
GTTCCTCTGCTGATGAATTCACAATCAAACATTATGCCGGTGAAGTATCTTATTCAATAG
AAGAGTTTTGTTTCAAAAATAATGATAACCTTTACGCTTCAATCGTTGGTTGTCTTCAAA
ATTCAACCTATCAATTCATCGTATCTTTGTTCCCTGAAAATATTCAAGATAATAAACAAG
CTCCTACCACTTCAAGTTTCAAAATTCGTCAATCTTCAAGTTATTTAGTAACTCGTTTAT
CCGCTTGT
Length of full length seq. 728