NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0242
Library FC-IC
(Link to library)
Clone ID FC-IC0242
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08312-1
Original site URL
Representative seq. ID FC-IC0242P
(Link to Original site)
Representative DNA sequence 
>FC-IC0242 (FC-IC0242Q) /CSM/FC-IC/FC-IC0242Q.Seq.d/
ACCAATTCCACCAGTTATGCCACCAGCAGGTAAAGCACCATGGGATTGGATATTATTACA
AGTTCTTTATGGAATTAAAAGNNAGNATGGAAGNAGGAAAACCANTTTNAAAATTAXXXX
XXXXXXACCAATTCCACCAGTTATGCCACCAGCAGGTAAAGCACCATGGATTGATATTAT
TACAAGTTCTTATGATAAAGAGATGAGAGAAACATTAAATAGTGAATCATTTAGTGATGT
TAAATTTACATTTTTTGAAGAGAGACCAGTTTATGCACATCGTGTTATATTATGCTCAGC
ATCTGAATTCTTTAGAAGGGTATTTGGATACACATTATCCTCTGACCAAGCTGAGTTCAA
AATTGGATGATTTAAATGAGGGTAAGGTTAAAAATATTCGTAGTGTTACAATTAAACCAA
ACGAAAAGAATGATGACGGCACTAAATCAAGTGGTGAATTTGTCGAGATCTCAATCGACA
GTTCAATAAATCGTCGTGTTTTCAATAGATTCATTGAGGTTTCTTTACACTGGTGTGTTG
AATTACCTTGATAAGAATGACCAACTTCAAGAGACAATTGCATTGGCAGAGAGTGTCGGC
TTCAAGTATTTAGCAAGTGCTTGTAAGAATGTGTTGGGTGGTAATGAAGATTTGAATCCA
TCGATTGGCACTTTCTTAAATGACCAATTGGGTGAAACTAGTAAAGAGCTATTCTTTACT
AAAAAGATTCTATCTGATATTCAATTCATCGTTGAAGGCAGATCAATTTTTGCACATAAA
GCATTGATTTTCTCACGTTCAAATGTTGTAAATGCGCTAATTGGTAGAAATTTCATTGAA
AGAGAAGGCAAGGTTGAAATGTCTGATGATGTAACTTTTGATTCATTCATGGCGATTTTA
GAATATTTGT
sequence update 2001.11. 5
Translated Amino Acid sequence 
PIPPVMPPAGKAPWDWILLQVLYGIKXXXGXRKTXXKI---

---PIPPVMPPAGKAPWIDIITSSYDKEMRETLNSESFSDVKFTFFEERPVYAHRVILCS
ASEFFRRVFGYTLSSDQAEFKIG*fk*g*g*kys*cyn*tkrke**rh*ikw*icrdlnr
qfnksscfq*ih*gfftlvc*itlirmtnfkrqlhwqrvsassi*qvlvrmcwvvmki*i
hrlals*mtnwvklvksysllkrfylifnsslkadqflhikh*fshvqml*mr*lveisl
kekarlkclmm*llihswrf*nic
Translated Amino Acid sequence (All Frames) 
Frame A:
tnstsyatsr*stmgldiitsslwn*kxxwkxenxfxn---

---tnstsyatsr*stmd*yyykfl**rdernik**ii**c*iyif*retslctscyiml
si*il*kgiwihiil*ps*vqnwmi*mrvrlkifvvlqlnqtkrmmtalnqvvnlsrsqs
tvq*ivvfsidslrflytgvlnyldkndqlqetialaesvgfkylasacknvlggnedln
psigtflndqlgetskelfftkkilsdiqfivegrsifahkalifsrsnvvnaligrnfi
eregkvemsddvtfdsfmaileyl

Frame B:
PIPPVMPPAGKAPWDWILLQVLYGIKXXXGXRKTXXKI---

---PIPPVMPPAGKAPWIDIITSSYDKEMRETLNSESFSDVKFTFFEERPVYAHRVILCS
ASEFFRRVFGYTLSSDQAEFKIG*fk*g*g*kys*cyn*tkrke**rh*ikw*icrdlnr
qfnksscfq*ih*gfftlvc*itlirmtnfkrqlhwqrvsassi*qvlvrmcwvvmki*i
hrlals*mtnwvklvksysllkrfylifnsslkadqflhikh*fshvqml*mr*lveisl
kekarlkclmm*llihswrf*nic

Frame C:
qfhqlchqqvkhhgigyyykffmelkxxmexgkpxxkl---

---qfhqlchqqvkhhglillqvlmikr*ekh*ivnhlvmlnlhflkrdqfmhivlyyaq
hlnslegyldthypltklssklddlnegkvknirsvtikpneknddgtkssgefveisid
ssinrrvfnrfievslhwcvelp**e*ptsrdncigrecrlqvfskcl*ecvgw**rfes
idwhflk*pig*n**raily*kdsi*ysihr*rqinfct*sidfltfkcckcanw*kfh*
krrqg*nv**cnf*fihgdfrif
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0242 (FC-IC0242Q) /CSM/FC-IC/FC-IC0242Q.Seq.d/                  1709   0.0
FC-IC0228 (FC-IC0228Q) /CSM/FC-IC/FC-IC0228Q.Seq.d/                  1515   0.0
FC-IC1572 (FC-IC1572Q) /CSM/FC-IC/FC-IC1572Q.Seq.d/                  1495   0.0
FC-IC1620 (FC-IC1620Q) /CSM/FC-IC/FC-IC1620Q.Seq.d/                  1487   0.0
FC-IC0284 (FC-IC0284Q) /CSM/FC-IC/FC-IC0284Q.Seq.d/                  1451   0.0
FC-IC0621 (FC-IC0621Q) /CSM/FC-IC/FC-IC0621Q.Seq.d/                  1447   0.0
FC-IC1196 (FC-IC1196Q) /CSM/FC-IC/FC-IC1196Q.Seq.d/                  1445   0.0
FC-IC1197 (FC-IC1197Q) /CSM/FC-IC/FC-IC1197Q.Seq.d/                  1439   0.0
FC-IC0027 (FC-IC0027Q) /CSM/FC-IC/FC-IC0027Q.Seq.d/                  1086   0.0
FC-IC0005 (FC-IC0005Q) /CSM/FC-IC/FC-IC0005Q.Seq.d/                   747   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF310886|AF310886.1 Dictyostelium discoideum RacA (racA) gene, complete cds.   777   0.0    3
BX323991|BX323991.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    34   0.62   6
AC016406|AC016406.2 Homo sapiens clone RP11-45L18, LOW-PASS SEQUENCE SAMPLING.    36   0.97   5
AC068649|AC068649.18 Homo sapiens chromosome 12 clone RP11-377C14, WORKING DRAFT SEQUENCE, 2 unordered pieces.    34   1.7    9
AC073665|AC073665.1 Mus musculus clone CT7-122J17, WORKING DRAFT SEQUENCE, 19 unordered pieces.    44   3.3    1
AC145932|AC145932.2 Gallus gallus chromosome UNK clone CH261-37K10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    44   3.3    1
AC115026|AC115026.3 Mus musculus clone RP24-238A19, WORKING DRAFT SEQUENCE, 13 unordered pieces.    44   3.3    1
AC017095|AC017095.7 Homo sapiens BAC clone RP11-516C4 from 2, complete sequence.    44   3.3    1
AE017057|AE017057.1 Oryza sativa (japonica cultivar-group) chromosome 10, section 11 of 77 of the complete sequence.    40   4.8    6
AE007655|AE007655.1 Clostridium acetobutylicum ATCC824 section 143 of 356 of the complete genome.    42   7.1    2
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB385392_1(AB385392|pid:none) Synthetic construct DNA, clone: pF...    51   6e-05
AB020685_1(AB020685|pid:none) Homo sapiens mRNA for KIAA0878 pro...    51   6e-05
BC041337_1(BC041337|pid:none) Homo sapiens Rho-related BTB domai...    51   6e-05
BC148035_1(BC148035|pid:none) Bos taurus Rho-related BTB domain ...    49   2e-04
AB018260_1(AB018260|pid:none) Homo sapiens mRNA for KIAA0717 pro...    49   3e-04
BC144800_1(BC144800|pid:none) Mus musculus Rho-related BTB domai...    49   3e-04
BC137646_1(BC137646|pid:none) Mus musculus Rho-related BTB domai...    49   3e-04
AK173015_1(AK173015|pid:none) Mus musculus premature mRNA for mK...    49   3e-04
(Q9DAK3) RecName: Full=Rho-related BTB domain-containing protein...    49   3e-04
AC117082_9(AC117082|pid:none) Dictyostelium discoideum chromosom...    49   3e-04
protein update 2009. 5.21
PSORT 

 psg: 0.80  gvh: 0.50  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for FC-IC0242 is cyt
5' end seq. ID FC-IC0242F
5' end seq. 
>FC-IC0242F.Seq
ACCAATTCCACCAGTTATGCCACCAGCAGGTAAAGCACCATGGGATTGGATATTATTACA
AGTTCTTTATGGAATTAAAAGNNAGNATGGAAGNAGGAAAACCANTTTNAAAATTANNNN
NNNNNN
Length of 5' end seq. 126
3' end seq. ID FC-IC0242Z
3' end seq. 
>FC-IC0242Z.Seq
----------ACCAATTCCACCAGTTATGCCACCAGCAGGTAAAGCACCATGGATTGATA
TTATTACAAGTTCTTATGATAAAGAGATGAGAGAAACATTAAATAGTGAATCATTTAGTG
ATGTTAAATTTACATTTTTTGAAGAGAGACCAGTTTATGCACATCGTGTTATATTATGCT
CAGCATCTGAATTCTTTAGAAGGGTATTTGGATACACATTATCCTCTGACCAAGCTGAGT
TCAAAATTGGATGATTTAAATGAGGGTAAGGTTAAAAATATTCGTAGTGTTACAATTAAA
CCAAACGAAAAGAATGATGACGGCACTAAATCAAGTGGTGAATTTGTCGAGATCTCAATC
GACAGTTCAATAAATCGTCGTGTTTTCAATAGATTCATTGAGGTTTCTTTACACTGGTGT
GTTGAATTACCTTGATAAGAATGACCAACTTCAAGAGACAATTGCATTGGCAGAGAGTGT
CGGCTTCAAGTATTTAGCAAGTGCTTGTAAGAATGTGTTGGGTGGTAATGAAGATTTGAA
TCCATCGATTGGCACTTTCTTAAATGACCAATTGGGTGAAACTAGTAAAGAGCTATTCTT
TACTAAAAAGATTCTATCTGATATTCAATTCATCGTTGAAGGCAGATCAATTTTTGCACA
TAAAGCATTGATTTTCTCACGTTCAAATGTTGTAAATGCGCTAATTGGTAGAAATTTCAT
TGAAAGAGAAGGCAAGGTTGAAATGTCTGATGATGTAACTTTTGATTCATTCATGGCGAT
TTTAGAATATTTGT
Length of 3' end seq. 784
Connected seq. ID FC-IC0242P
Connected seq. 
>FC-IC0242P.Seq
ACCAATTCCACCAGTTATGCCACCAGCAGGTAAAGCACCATGGGATTGGATATTATTACA
AGTTCTTTATGGAATTAAAAGNNAGNATGGAAGNAGGAAAACCANTTTNAAAATTA----
------ACCAATTCCACCAGTTATGCCACCAGCAGGTAAAGCACCATGGATTGATATTAT
TACAAGTTCTTATGATAAAGAGATGAGAGAAACATTAAATAGTGAATCATTTAGTGATGT
TAAATTTACATTTTTTGAAGAGAGACCAGTTTATGCACATCGTGTTATATTATGCTCAGC
ATCTGAATTCTTTAGAAGGGTATTTGGATACACATTATCCTCTGACCAAGCTGAGTTCAA
AATTGGATGATTTAAATGAGGGTAAGGTTAAAAATATTCGTAGTGTTACAATTAAACCAA
ACGAAAAGAATGATGACGGCACTAAATCAAGTGGTGAATTTGTCGAGATCTCAATCGACA
GTTCAATAAATCGTCGTGTTTTCAATAGATTCATTGAGGTTTCTTTACACTGGTGTGTTG
AATTACCTTGATAAGAATGACCAACTTCAAGAGACAATTGCATTGGCAGAGAGTGTCGGC
TTCAAGTATTTAGCAAGTGCTTGTAAGAATGTGTTGGGTGGTAATGAAGATTTGAATCCA
TCGATTGGCACTTTCTTAAATGACCAATTGGGTGAAACTAGTAAAGAGCTATTCTTTACT
AAAAAGATTCTATCTGATATTCAATTCATCGTTGAAGGCAGATCAATTTTTGCACATAAA
GCATTGATTTTCTCACGTTCAAATGTTGTAAATGCGCTAATTGGTAGAAATTTCATTGAA
AGAGAAGGCAAGGTTGAAATGTCTGATGATGTAACTTTTGATTCATTCATGGCGATTTTA
GAATATTTGT
Length of connected seq. 900
Full length Seq ID -
Full length Seq. -
Length of full length seq. -