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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0224
Library FC-IC
(Link to library)
Clone ID FC-IC0224
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U07878-1
Original site URL
Representative seq. ID FC-IC0224E
(Link to Original site)
Representative DNA sequence 
>FC-IC0224 (FC-IC0224Q) /CSM/FC-IC/FC-IC0224Q.Seq.d/
ACTCTATNCTGTAACTGAAACACCAGTATCCAATTTAAGAACACTTTTAGATGCTGAACC
AACAATTGTTGAATCATATCCAGGTCAAGATATTCAACAATTTGAAGTTAATCAATTTTC
AGATTTAACAGCATCAGAGTTTAGTAATATTTATGCCGGTGCAGATGCATCATTAGCTAT
TTCTGAAGTAGCAGCATCAACTTTATCAACTGGTGCCATTGTTGGTATTGCAGTTGGTGG
TAGTGTTGCACTTATTGGAGCTACTGCTGCAACTGTTTTAATTGTTAAAAAGAAGAGACA
AAACAAAAAACCACAAGTTTCTGAACCAATTGCAACAACTCAAGATGTTAAAATGAAACC
AACCAATGGTATAGATCTTTTAAATCGT
sequence update 2001.11.10
Translated Amino Acid sequence 
LYXVTETPVSNLRTLLDAEPTIVESYPGQDIQQFEVNQFSDLTASEFSNIYAGADASLAI
SEVAASTLSTGAIVGIAVGGSVALIGATAATVLIVKKKRQNKKPQVSEPIATTQDVKMKP
TNGIDLLNR
Translated Amino Acid sequence (All Frames) 
Frame A:
tlxcn*ntsiqfkntfrc*tnnc*iisrsrysti*s*sifrfnsirv**ylcrcrciisy
f*sssinfinwchcwycsww*cctywsyccncfnc*keetkqkttsf*tncnnsrc*net
nqwyrsfks


Frame B:
LYXVTETPVSNLRTLLDAEPTIVESYPGQDIQQFEVNQFSDLTASEFSNIYAGADASLAI
SEVAASTLSTGAIVGIAVGGSVALIGATAATVLIVKKKRQNKKPQVSEPIATTQDVKMKP
TNGIDLLNR


Frame C:
sxl*lkhqypi*ehf*mlnqqllnhiqvkifnnlklinfqi*qhqslvifmpvqmhh*lf
lk*qhqlyqlvpllvlqlvvvlhllelllqlf*llkrrdktknhkflnqlqqlkmlk*nq
pmv*if*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1408 (FC-IC1408Q) /CSM/FC-IC/FC-IC1408Q.Seq.d/                   763   0.0
FC-IC1375 (FC-IC1375Q) /CSM/FC-IC/FC-IC1375Q.Seq.d/                   763   0.0
FC-IC0991 (FC-IC0991Q) /CSM/FC-IC/FC-IC0991Q.Seq.d/                   763   0.0
FC-IC0916 (FC-IC0916Q) /CSM/FC-IC/FC-IC0916Q.Seq.d/                   763   0.0
FC-IC0888 (FC-IC0888Q) /CSM/FC-IC/FC-IC0888Q.Seq.d/                   763   0.0
FC-IC0797 (FC-IC0797Q) /CSM/FC-IC/FC-IC0797Q.Seq.d/                   763   0.0
FC-IC0224 (FC-IC0224Q) /CSM/FC-IC/FC-IC0224Q.Seq.d/                   763   0.0
FC-IC1257 (FC-IC1257Q) /CSM/FC-IC/FC-IC1257Q.Seq.d/                   755   0.0
FC-IC0201 (FC-IC0201Q) /CSM/FC-IC/FC-IC0201Q.Seq.d/                   755   0.0
FC-IC0072 (FC-IC0072Q) /CSM/FC-IC/FC-IC0072Q.Seq.d/                   755   0.0
own update 2001.11.18
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AW686276|AW686276.2 NF036A10NR1F1000 Nodulated root Medicago truncatula cDNA clone NF036A10NR 5', mRNA sequence.    40   0.018  2
AC015943|AC015943.7 Homo sapiens chromosome 17, clone RP11-581B19, complete sequence.    34   0.055  5
AE016949|AE016949.1 Enterococcus faecalis V583, section 3 of 11 of the complete genome.    34   0.083  7
AL929586|AL929586.19 Zebrafish DNA sequence from clone CH211-188I17.    38   0.13   3
AC146194|AC146194.1 Pan troglodytes chromosome UNK clone CH251-490J23, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces.    36   0.27   7
AC109484|AC109484.2 Homo sapiens chromosome 5 clone RP11-514A16, complete sequence.    40   0.28   5
AC099704|AC099704.6 Mus musculus chromosome 15 clone RP23-256A2 map 15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    46   0.35   1
AC131773|AC131773.3 Mus musculus chromosome 15 clone RP24-308A19, complete sequence.    46   0.35   1
BX323864|BX323864.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-218K4.    36   0.47   6
AC120442|AC120442.4 Rattus norvegicus clone CH230-292K5, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    38   0.53   5
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001328_86(CP001328|pid:none) Micromonas sp. RCC299 chromosome ...    34   1.8
AP007255_435(AP007255|pid:none) Magnetospirillum magneticum AMB-...    33   4.1
AB377534_1(AB377534|pid:none) Spinacia oleracea SoCP3-41 mRNA fo...    32   5.3
DQ631808_1(DQ631808|pid:none) Lycopersicon esculentum phytophtho...    32   5.3
EF530139_1(EF530139|pid:none) Actinidia eriantha actinidin Act4a...    32   7.0
CP000927_3570(CP000927|pid:none) Caulobacter sp. K31, complete g...    32   9.1
AF083753_1(AF083753|pid:none) Arabidopsis thaliana clone sps565 ...    32   9.1
AB016870_9(AB016870|pid:none) Arabidopsis thaliana genomic DNA, ...    32   9.1
protein update 2009. 7. 1
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.29  top: 1.00  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.08  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for FC-IC0224 is nuc
5' end seq. ID FC-IC0224F
5' end seq. 
>FC-IC0224F.Seq
ACTCTATACTGTAACTGAAACACCAGTATCCAATTTAAGAACACTTTTAGATGCTGAACC
AACAATTGTTGAATCATATCCAGGTCAAGATATTCAACAATTTGAAGTTAATCAATTTTC
AGATTTAACAGCATCAGAGTTTAGTAATATTTATGCCGGTGCAGATGCATCATTAGCTAT
TTCTGAAGTAGCAGCATCAACTTTATCAACTGGTGCCATTGTTGGTATTGCAGTTGGTGG
TAGTGTTGCACTTATTGGAGCTACTGCTGCAACTGTTTTAATTGTTAAAAAGAAGAGACA
AAACAAAAAACCACAAGTTTCTGAACCAATTGCAACAACTCAAGATGTTAAAATGAAACC
AACCAATGGTATAGATCTTTTAAATCGTNNNNNNNNNN
Length of 5' end seq. 398
3' end seq. ID FC-IC0224Z
3' end seq. 
>FC-IC0224Z.Seq
NNNNNNNNNNACTNTATGCTGTAACTGAAACACCAGTATCCAATTTAAGAACACTTTTAG
ATGNTGAACCAACAATTGTTGAATCATATCCAGGTCAAGATATTCAACAATTTGAAGTTA
ATCAATTTTCAGATTTAACAGCATCAGAGTTTAGTAATATTTATGCCGGTGCAGATGCAT
CATTAGCTATTTCTGAAGTAGCAGCATCAACTTTATCAACTGGTGCCATTGTTGGTATTG
CAGTTGGTGGTAGTGTTGCACTTATTGGAGCTACTGCTGCAACTGTTTTAATTGTTAAAA
AGAAGAGACAAAACAAAAAACCACAAGTTTCTGAACCAATTGCAACAACTCAAGATGTTA
AAATGAAACCAACCAATGGTATAGATCTTTTAAATCGT
Length of 3' end seq. 398
Connected seq. ID FC-IC0224P
Connected seq. 
>FC-IC0224P.Seq
ACTCTATACTGTAACTGAAACACCAGTATCCAATTTAAGAACACTTTTAGATGCTGAACC
AACAATTGTTGAATCATATCCAGGTCAAGATATTCAACAATTTGAAGTTAATCAATTTTC
AGATTTAACAGCATCAGAGTTTAGTAATATTTATGCCGGTGCAGATGCATCATTAGCTAT
TTCTGAAGTAGCAGCATCAACTTTATCAACTGGTGCCATTGTTGGTATTGCAGTTGGTGG
TAGTGTTGCACTTATTGGAGCTACTGCTGCAACTGTTTTAATTGTTAAAAAGAAGAGACA
AAACAAAAAACCACAAGTTTCTGAACCAATTGCAACAACTCAAGATGTTAAAATGAAACC
AACCAATGGTATAGATCTTTTAAATCGT----------ACTNTATGCTGTAACTGAAACA
CCAGTATCCAATTTAAGAACACTTTTAGATGNTGAACCAACAATTGTTGAATCATATCCA
GGTCAAGATATTCAACAATTTGAAGTTAATCAATTTTCAGATTTAACAGCATCAGAGTTT
AGTAATATTTATGCCGGTGCAGATGCATCATTAGCTATTTCTGAAGTAGCAGCATCAACT
TTATCAACTGGTGCCATTGTTGGTATTGCAGTTGGTGGTAGTGTTGCACTTATTGGAGCT
ACTGCTGCAACTGTTTTAATTGTTAAAAAGAAGAGACAAAACAAAAAACCACAAGTTTCT
GAACCAATTGCAACAACTCAAGATGTTAAAATGAAACCAACCAATGGTATAGATCTTTTA
AATCGT
Length of connected seq. 776
Full length Seq ID FC-IC0224E
Full length Seq. 
>FC-IC0224E.Seq
ACTCTATNCTGTAACTGAAACACCAGTATCCAATTTAAGAACACTTTTAGATGCTGAACC
AACAATTGTTGAATCATATCCAGGTCAAGATATTCAACAATTTGAAGTTAATCAATTTTC
AGATTTAACAGCATCAGAGTTTAGTAATATTTATGCCGGTGCAGATGCATCATTAGCTAT
TTCTGAAGTAGCAGCATCAACTTTATCAACTGGTGCCATTGTTGGTATTGCAGTTGGTGG
TAGTGTTGCACTTATTGGAGCTACTGCTGCAACTGTTTTAATTGTTAAAAAGAAGAGACA
AAACAAAAAACCACAAGTTTCTGAACCAATTGCAACAACTCAAGATGTTAAAATGAAACC
AACCAATGGTATAGATCTTTTAAATCGT
Length of full length seq. 388