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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0216
Library FC-IC
(Link to library)
Clone ID FC-IC0216
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U03331-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>FC-IC0216 (FC-IC0216Q) /CSM/FC-IC/FC-IC0216Q.Seq.d/
CCAATAATATTCCAAGAAAATATATAGTANAATTAAAACATAACGATGACGTAAAAGACT
TTGAACGTTATGAATTTGTGACCTATACGTTTAGAAGCTTTAAATATATTTATGAAATGT
TCTATAAAAAGCAAAAAAAAGTATTACATTTAGAAAAAATAAAAGAATATCTAGATGAAC
GAGCATTAGCCCATTGGATTATGGATGATGGCGGGTATACTGGAGCAGGTATTAGAATAG
CAACAAATGCCTTTACTTTAAAAGAAGTAATGTTTTTGAAAGAGTTATTAGAAGACAAAT
TTAAATTAAAATGT
sequence update 2001. 6.12
Translated Amino Acid sequence 
NNIPRKYIVXLKHNDDVKDFERYEFVTYTFRSFKYIYEMFYKKQKKVLHLEKIKEYLDER
ALAHWIMDDGGYTGAGIRIATNAFTLKEVMFLKELLEDKFKLKC
Translated Amino Acid sequence (All Frames) 
Frame A:
piifqeni*xn*nitmt*ktlnvmnl*pirlealnifmkcsikskkkyyi*kk*kni*mn
eh*piglwmmagileqvle*qqmpll*kk*cf*ksy*ktnln*n


Frame B:
q*yskkiysxikt*r*rkrl*tl*icdlyv*kl*iyl*nvl*kakksitfrknkrisr*t
sispldyg*wrvywsry*nsnkclyfkrsnvfervirrqi*ikm


Frame C:
NNIPRKYIVXLKHNDDVKDFERYEFVTYTFRSFKYIYEMFYKKQKKVLHLEKIKEYLDER
ALAHWIMDDGGYTGAGIRIATNAFTLKEVMFLKELLEDKFKLKC
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/               345   2e-94
FC-IC0216 (FC-IC0216Q) /CSM/FC-IC/FC-IC0216Q.Seq.d/                   345   2e-94
VHD703 (VHD703Q) /CSM/VH/VHD7-A/VHD703Q.Seq.d/                         34   1.2
VHD388 (VHD388Q) /CSM/VH/VHD3-D/VHD388Q.Seq.d/                         34   1.2
SLJ753 (SLJ753Q) /CSM/SL/SLJ7-C/SLJ753Q.Seq.d/                         34   1.2
SLD181 (SLD181Q) /CSM/SL/SLD1-D/SLD181Q.Seq.d/                         34   1.2
VSK334 (VSK334Q) /CSM/VS/VSK3-B/VSK334Q.Seq.d/                         32   4.7
VSJ303 (VSJ303Q) /CSM/VS/VSJ3-A/VSJ303Q.Seq.d/                         32   4.7
VSI224 (VSI224Q) /CSM/VS/VSI2-A/VSI224Q.Seq.d/                         32   4.7
VSG408 (VSG408Q) /CSM/VS/VSG4-A/VSG408Q.Seq.d/                         32   4.7
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence.   345   e-158  2
D50297|D50297.1 Dictyostelium discoideum mitochondrial DNA for cytochrome oxidase subunit 1 and subunit 2, ai4, ai3, ai2b, ai2a,complete cds.   345   e-158  2
X81884|X81884.1 D.discoideum mitochondrial cox1 gene and cox2 gene.   345   e-158  2
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence.    34   3e-04  8
AP003188|AP003188.2 Clostridium perfringens DNA, complete genome, section 4/10.    34   5e-04  9
AC092491|AC092491.6 Homo sapiens 12 BAC RP11-125G9 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    42   0.001  5
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence.    36   0.002  9
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4.    34   0.003  9
AC145774|AC145774.1 Pan troglodytes BAC clone RP43-160F1 from 7, complete sequence.    36   0.005  6
AL034558|AL034558.3 Plasmodium falciparum MAL3P2.                  36   0.005  8
dna update 2003.12. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X81884_4(X81884|pid:none) D.discoideum mitochondrial cox1 gene a...   186   2e-46
AB000109_9(AB000109|pid:none) Dictyostelium discoideum mitochond...   186   2e-46
AY863213_8(AY863213|pid:none) Smittium culisetae mitochondrion, ...    73   4e-12
(A9RAG8) RecName: Full=Cytochrome b mRNA maturase bI2;  &DQ50894...    60   2e-08
AJ307410_15(AJ307410|pid:none) Yarrowia lipolytica complete mito...    58   9e-08
S63639(S63639)hypothetical protein 246 - Allomyces macrogynus mi...    57   2e-07
S63641(S63641)hypothetical protein 242 - Allomyces macrogynus mi...    57   3e-07
EF463011_23(EF463011|pid:none) Chlorokybus atmophyticus strain S...    56   3e-07
S63646(S63646)hypothetical protein 261 - Allomyces macrogynus mi...    54   2e-06
DQ287690_6(DQ287690|pid:none) Blastocladiella emersonii mitochon...    53   4e-06
protein update 2009. 7. 1
PSORT 

 psg: 0.66  gvh: 0.06  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for FC-IC0216 is nuc
5' end seq. ID FC-IC0216F
5' end seq. 
>FC-IC0216F.Seq
ACCAATAATATTCCAAGAAAATATATAGTAAAATTAAAACATAACGATGACGTAAAAGAC
TTTGAACGTTATGAATTTGTGACCTATACGTTTAGAAGCTTTAAATATATTTATGAAATG
TTCTATAAAAAGCAAAAAAAAGTATTACATTTAGAAAAAATAAAAGAATATCTAGATGAA
CGAGCATTAGCCCATTGGATTATGGATGATGGCGGGTATACTGGAGCAGGTATTAGAATA
GCAACAAATGCCTTTACTTTAAAAGAAGTAATGTTTTTGAAAGAGTTATTANAAGACAAA
TTTAAATTAAAATGT----------
Length of 5' end seq. 315
3' end seq. ID FC-IC0216Z
3' end seq. 
>FC-IC0216Z.Seq
----------GCCAANANTATTNCAAGNANATATATAGTATAATTAAAACATNACGATGA
CGTAAAAGACTTTGAACGTTATGAATTTGTGACCTATACGTTTAGAAGCTTTAAATATAT
TTATGAAATGTTCTATAAAAAGCAAAAAAAAGTATTACATTTAGAAAAAATAAAAGAATA
TCTAGATGAACGAGCATTAGCCCATTGGATTATGGATGATGGCGGGTATACTGGAGCAGG
TATTAGAATAGCAACAAATGCCTTTACTTTAAAAGAAGTAATGTTTTTGAAAGAGTTATT
AGAAGACAAATTTAAATTAAAATGT
Length of 3' end seq. 315
Connected seq. ID FC-IC0216P
Connected seq. 
>FC-IC0216P.Seq
ACCAATAATATTCCAAGAAAATATATAGTAAAATTAAAACATAACGATGACGTAAAAGAC
TTTGAACGTTATGAATTTGTGACCTATACGTTTAGAAGCTTTAAATATATTTATGAAATG
TTCTATAAAAAGCAAAAAAAAGTATTACATTTAGAAAAAATAAAAGAATATCTAGATGAA
CGAGCATTAGCCCATTGGATTATGGATGATGGCGGGTATACTGGAGCAGGTATTAGAATA
GCAACAAATGCCTTTACTTTAAAAGAAGTAATGTTTTTGAAAGAGTTATTANAAGACAAA
TTTAAATTAAAATGT----------GCCAANANTATTNCAAGNANATATATAGTATAATT
AAAACATNACGATGACGTAAAAGACTTTGAACGTTATGAATTTGTGACCTATACGTTTAG
AAGCTTTAAATATATTTATGAAATGTTCTATAAAAAGCAAAAAAAAGTATTACATTTAGA
AAAAATAAAAGAATATCTAGATGAACGAGCATTAGCCCATTGGATTATGGATGATGGCGG
GTATACTGGAGCAGGTATTAGAATAGCAACAAATGCCTTTACTTTAAAAGAAGTAATGTT
TTTGAAAGAGTTATTAGAAGACAAATTTAAATTAAAATGT
Length of connected seq. 630
Full length Seq ID FC-IC0216E
Full length Seq. 
>FC-IC0216E.Seq
NCCAATAATATTCCAAGAAAATATATAGTANAATTAAAACATAACGATGACGTAAAAGAC
TTTGAACGTTATGAATTTGTGACCTATACGTTTAGAAGCTTTAAATATATTTATGAAATG
TTCTATAAAAAGCAAAAAAAAGTATTACATTTAGAAAAAATAAAAGAATATCTAGATGAA
CGAGCATTAGCCCATTGGATTATGGATGATGGCGGGTATACTGGAGCAGGTATTAGAATA
GCAACAAATGCCTTTACTTTAAAAGAAGTAATGTTTTTGAAAGAGTTATTAGAAGACAAA
TTTAAATTAAAATGT
Length of full length seq. 315