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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0191
Library FC-IC
(Link to library)
Clone ID FC-IC0191
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U03328-1
Original site URL
Representative seq. ID FC-IC0191E
(Link to Original site)
Representative DNA sequence 
>FC-IC0191 (FC-IC0191Q) /CSM/FC-IC/FC-IC0191Q.Seq.d/
ACAATTGGTGGTAACTGATTATGATCACCAATTAATATAACTCTTTTTAAACCTCTACTT
ATATTATTACCATTACCATTACCATTATCATCGCCATCAACACCAATAATTGCATCACCA
ATTTCATTTGAATTTAATTGTAATTGTAATGGTATAAAAGATTCAATATCAGAGATTTGA
GCAGATTCTTCCATTAATAAATTATCAAATTTAAAACCTAATCTTAATAATTCATTTCTT
TTTAAAGCAGCATGAGT
sequence update 2001. 6.12
Translated Amino Acid sequence 
tiggn*l*SPINITLFKPLLILLPLPLPLSSPSTPIIASPISFEFNCNCNGIKDSISEI*
adssinklsnlkpnlnnsflfkaa*
Translated Amino Acid sequence (All Frames) 
Frame A:
tiggn*l*SPINITLFKPLLILLPLPLPLSSPSTPIIASPISFEFNCNCNGIKDSISEI*
adssinklsnlkpnlnnsflfkaa*


Frame B:
qlvvtdydhqli*lflnlylyyyhyhyhyhrhqhq*lhhqfhlnlivivmv*kiqyqrfe
qilplinyqi*nliliihfflkqhe


Frame C:
nww*limitn*ynsf*tstyiitititiiiaintnncitnfi*i*l*l*wykrfnirdls
rffh**iikfkt*s**fisf*ssms
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0191 (FC-IC0191Q) /CSM/FC-IC/FC-IC0191Q.Seq.d/                   509   e-144
AHK414 (AHK414Q) /CSM/AH/AHK4-A/AHK414Q.Seq.d/                         50   2e-05
AHG668 (AHG668Q) /CSM/AH/AHG6-C/AHG668Q.Seq.d/                         50   2e-05
SSK116 (SSK116Q) /CSM/SS/SSK1-A/SSK116Q.Seq.d/                         48   6e-05
VHP736 (VHP736Q) /CSM/VH/VHP7-B/VHP736Q.Seq.d/                         44   0.001
VHO732 (VHO732Q) /CSM/VH/VHO7-B/VHO732Q.Seq.d/                         44   0.001
VHN261 (VHN261Q) /CSM/VH/VHN2-C/VHN261Q.Seq.d/                         44   0.001
VHH491 (VHH491Q) /CSM/VH/VHH4-D/VHH491Q.Seq.d/                         44   0.001
VHF147 (VHF147Q) /CSM/VH/VHF1-B/VHF147Q.Seq.d/                         44   0.001
VHE164 (VHE164Q) /CSM/VH/VHE1-C/VHE164Q.Seq.d/                         44   0.001
own update 2002.11.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   509   e-141  11
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    46   6e-08  13
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40   1e-07  14
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    40   1e-07  9
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    40   6e-06  10
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   1e-05  10
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    34   4e-05  10
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    40   1e-04  10
BX005135|BX005135.5 Zebrafish DNA sequence from clone CH211-89P16 in linkage group 11.    38   7e-04  6
AC116922|AC116922.1 Dictyostelium discoideum chromosome 2 map 4969700-4990227 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    52   0.001  3
dna update 2003.12. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_82(AC116986|pid:none) Dictyostelium discoideum chromoso...   119   3e-26
AC005499_3(AC005499|pid:none) Arabidopsis thaliana chromosome 2 ...    77   2e-13
AY099864_1(AY099864|pid:none) Arabidopsis thaliana unknown prote...    77   2e-13
AC103551_11(AC103551|pid:none) Oryza sativa chromosome 3 BAC OSJ...    77   2e-13
EF553519_1(EF553519|pid:none) Homo sapiens clone DKFZp686B23123 ...    75   9e-13
(O60306) RecName: Full=Intron-binding protein aquarius; AltName:...    75   9e-13
BC108262_1(BC108262|pid:none) Homo sapiens aquarius homolog (mou...    75   9e-13
BC036913_1(BC036913|pid:none) Homo sapiens aquarius homolog (mou...    75   9e-13
BC042479_1(BC042479|pid:none) Mus musculus aquarius, mRNA (cDNA ...    75   9e-13
AB172202_1(AB172202|pid:none) Macaca fascicularis brain cDNA clo...    75   9e-13
protein update 2009. 7. 1
PSORT 

 psg: 0.93  gvh: 0.71  alm: 0.48  top: 0.27  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	  8.0 %: vacuolar
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial

>> prediction for FC-IC0191 is exc
5' end seq. ID FC-IC0191F
5' end seq. 
>FC-IC0191F.Seq
ACAATTGGTGGTAACTGATTATGATCACCAATTAATATAACTCTTTTTAAACCTCTACTT
ATATTATTACCATTACCATTACCATTATCATCGCCATCAACACCAATAATTGCATCACCA
ATTTCATTTGAATTTAATTGTAATTGTAATGGTATAAAAGATTCAATATCAGAGATTTGA
GCAGATTCTTCCATTAATAAATTATCAAATTTAAAACCTAATCTTAATAATTCATTTCTT
TTTAAAGCAGCATGAGT----------
Length of 5' end seq. 257
3' end seq. ID FC-IC0191Z
3' end seq. 
>FC-IC0191Z.Seq
----------ACAATTGGTGGTAACTGATTATGATCACCAATTAATATAACTCTTTTTAA
ACCTCTACTTATATTATTACCATTACCATTACCATTATCATCGCCATCAACACCAATAAT
TGCATCACCAATTTCATTTGAATTTAATTGTAATTGTAATGGTATAAAAGATTCAATATC
AGAGATTTGAGCAGATTCTTCCATTAATAAATTATCAAATTTAAAACCTAATCTTAATAA
TTCATTTCTTTTTAAAGCAGCATGAGT
Length of 3' end seq. 257
Connected seq. ID FC-IC0191P
Connected seq. 
>FC-IC0191P.Seq
ACAATTGGTGGTAACTGATTATGATCACCAATTAATATAACTCTTTTTAAACCTCTACTT
ATATTATTACCATTACCATTACCATTATCATCGCCATCAACACCAATAATTGCATCACCA
ATTTCATTTGAATTTAATTGTAATTGTAATGGTATAAAAGATTCAATATCAGAGATTTGA
GCAGATTCTTCCATTAATAAATTATCAAATTTAAAACCTAATCTTAATAATTCATTTCTT
TTTAAAGCAGCATGAGT----------ACAATTGGTGGTAACTGATTATGATCACCAATT
AATATAACTCTTTTTAAACCTCTACTTATATTATTACCATTACCATTACCATTATCATCG
CCATCAACACCAATAATTGCATCACCAATTTCATTTGAATTTAATTGTAATTGTAATGGT
ATAAAAGATTCAATATCAGAGATTTGAGCAGATTCTTCCATTAATAAATTATCAAATTTA
AAACCTAATCTTAATAATTCATTTCTTTTTAAAGCAGCATGAGT
Length of connected seq. 514
Full length Seq ID FC-IC0191E
Full length Seq. 
>FC-IC0191E.Seq
ACAATTGGTGGTAACTGATTATGATCACCAATTAATATAACTCTTTTTAAACCTCTACTT
ATATTATTACCATTACCATTACCATTATCATCGCCATCAACACCAATAATTGCATCACCA
ATTTCATTTGAATTTAATTGTAATTGTAATGGTATAAAAGATTCAATATCAGAGATTTGA
GCAGATTCTTCCATTAATAAATTATCAAATTTAAAACCTAATCTTAATAATTCATTTCTT
TTTAAAGCAGCATGAGT
Length of full length seq. 257