FC-IC0181
Library FC-IC
(Link to library)
Clone ID FC-IC0181
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03326-1
Original site URL
Representative seq. ID FC-IC0181F
(Link to Original site)
Representative DNA sequence
>FC-IC0181 (FC-IC0181Q) /CSM/FC-IC/FC-IC0181Q.Seq.d/
ACCTAAGAAAGCACAAAAAACACCTTCAACTGATAGTGTTGATTTAGCACCTAACAAATC
TTGTTCAGAACCAGTAATAACAATTGAATTTGGATCATTATAACAAGCTATTTCAATTTC
TGGATATAATAAAGCACATTTTTCAAGATAAGCATCAGCACCGATACCAATTGATAATAA
TCTACCAGTTCCCATTGTTAAATTTTGAGCTAAGCCTCTATAGTAAACGATTTTAACAGC
AGTTTCTAAACTGATGACACCAGAGAATAAAGCGGATGAAACTTCACCAAAACTATGACC
AACTACAATTGATGGTGAAATACCAAATGATTTATAAAGTGCGACTAAACCAACTTGAAT
TAAGAAAATACTTGGTTGTGCTAAAATTGGATGATGAATTTCTGGTGAATCATCACTTTC
TAATGAACGTAACTTTTGGAGTATTGAATATCCAAAATAATTAGCAAGTAATTTATCACA
ATGATCAATGGCATCTTTAAATACTGATTCAGTTTCATATAATGCTTTACCCATATCTCT
CCATTGTTGGGCCXXXXXXXXXX
sequence update 2001. 7.13
Translated Amino Acid sequence
lrkhkkhlqlivli*hltnlvqnq**qlnldhynklfqfldiikhifqdkhqhryqliii
yqfpllnfelslyskrf*qqfln**HQRIKRMKLHQNYDQLQLMVKYQMIYKVRLNQLEL
RKYLVVLKLDDEFLVNHHFLMNVTFGVLNIQNN*qviyhndqwhl*iliqfhimlypyls
ivg---


Translated Amino Acid sequence (All Frames)
Frame A:
t*estkntfn**c*fst*qilfrtsnnn*iwiiitsyfnfwi**stffkisistdtn***
stsshc*ils*asivndfnssf*tddtre*sg*nftktmtnyn*w*ntk*fikcd*tnln
*entwlc*nwmmnfw*iitf**t*lley*iskiisk*fitmingifky*fsfi*cfthis
pllg---


Frame B:
pkkaqktpstdsvdlapnkscsepvitiefgsl*qaisisgynkahfsr*asapipidnn
lpvpivkf*akpl**tiltavsklmtpenkadetspkl*pttidgeipndl*satkpt*i
kkilgcakig**isgesslsnernfwsieypk*lasnlsq*smaslntdsvsynalpisl
hcw---


Frame C:
lrkhkkhlqlivli*hltnlvqnq**qlnldhynklfqfldiikhifqdkhqhryqliii
yqfpllnfelslyskrf*qqfln**HQRIKRMKLHQNYDQLQLMVKYQMIYKVRLNQLEL
RKYLVVLKLDDEFLVNHHFLMNVTFGVLNIQNN*qviyhndqwhl*iliqfhimlypyls
ivg---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC0181 (FC-IC0181Q) /CSM/FC-IC/FC-IC0181Q.Seq.d/ 1096 0.0
VFG514 (VFG514Q) /CSM/VF/VFG5-A/VFG514Q.Seq.d/ 1068 0.0
VHI768 (VHI768Q) /CSM/VH/VHI7-C/VHI768Q.Seq.d/ 48 1e-04
CHO882 (CHO882Q) /CSM/CH/CHO8-D/CHO882Q.Seq.d/ 44 0.002
CHM734 (CHM734Q) /CSM/CH/CHM7-B/CHM734Q.Seq.d/ 44 0.002
VHO445 (VHO445Q) /CSM/VH/VHO4-B/VHO445Q.Seq.d/ 36 0.55
CHK691 (CHK691Q) /CSM/CH/CHK6-D/CHK691Q.Seq.d/ 36 0.55
CHK654 (CHK654Q) /CSM/CH/CHK6-C/CHK654Q.Seq.d/ 36 0.55
CHH202 (CHH202Q) /CSM/CH/CHH2-A/CHH202Q.Seq.d/ 36 0.55
AHI214 (AHI214Q) /CSM/AH/AHI2-A/AHI214Q.Seq.d/ 36 0.55

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 1076 0.0 1
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 44 0.013 7
AC100499|AC100499.1 Mus musculus clone RP23-143I7, LOW-PASS SEQUENCE SAMPLING. 40 0.018 2
BX005124|BX005124.7 Zebrafish DNA sequence from clone CH211-284A16. 38 0.067 5
BX511272|BX511272.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-276L13. 44 0.075 4
BI416818|BI416818.1 hasp002xg07f Heterobasidion annosum - Scots pine infection stage subtraction cDNA library (hasp) Heterobasidion annosum/Pinus sylvestris mixed EST library cDNA clone hasp002xg07f, mRNA sequence. 48 0.13 1
AC145508|AC145508.2 Dasypus novemcinctus clone VMRC5-464O17, WORKING DRAFT SEQUENCE, 3 ordered pieces. 48 0.13 1
AC104985|AC104985.3 Homo sapiens chromosome 18, clone RP11-379L18, complete sequence. 38 0.14 8
AC025264|AC025264.16 Homo sapiens 12 BAC RP11-704P17 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 34 0.29 7
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 38 0.37 8
dna update 2003.12. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116305_81(AC116305|pid:none) Dictyostelium discoideum chromoso... 360 2e-98
AC116305_75(AC116305|pid:none) Dictyostelium discoideum chromoso... 350 1e-95
AC117176_58(AC117176|pid:none) Dictyostelium discoideum chromoso... 161 9e-39
AC116982_23(AC116982|pid:none) Dictyostelium discoideum chromoso... 161 1e-38
AC116982_20(AC116982|pid:none) Dictyostelium discoideum chromoso... 157 1e-37
AC116963_16(AC116963|pid:none) Dictyostelium discoideum chromoso... 157 2e-37
AC116982_72(AC116982|pid:none) Dictyostelium discoideum chromoso... 147 2e-34
AC117075_22(AC117075|pid:none) Dictyostelium discoideum chromoso... 145 7e-34
CP000934_3129(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 121 1e-26
EU569687_1(EU569687|pid:none) Pseudoalteromonas sp. NJ632 polyke... 120 3e-26
protein update 2009. 5.21
PSORT

psg: 0.54 gvh: 0.45 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: nuclear
24.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for FC-IC0181 is cyt

5' end seq. ID FC-IC0181F
5' end seq.
>FC-IC0181F.Seq
ACCTAAGAAAGCACAAAAAACACCTTCAACTGATAGTGTTGATTTAGCACCTAACAAATC
TTGTTCAGAACCAGTAATAACAATTGAATTTGGATCATTATAACAAGCTATTTCAATTTC
TGGATATAATAAAGCACATTTTTCAAGATAAGCATCAGCACCGATACCAATTGATAATAA
TCTACCAGTTCCCATTGTTAAATTTTGAGCTAAGCCTCTATAGTAAACGATTTTAACAGC
AGTTTCTAAACTGATGACACCAGAGAATAAAGCGGATGAAACTTCACCAAAACTATGACC
AACTACAATTGATGGTGAAATACCAAATGATTTATAAAGTGCGACTAAACCAACTTGAAT
TAAGAAAATACTTGGTTGTGCTAAAATTGGATGATGAATTTCTGGTGAATCATCACTTTC
TAATGAACGTAACTTTTGGAGTATTGAATATCCAAAATAATTAGCAAGTAATTTATCACA
ATGATCAATGGCATCTTTAAATACTGATTCAGTTTCATATAATGCTTTACCCATATCTCT
CCATTGTTGGGCC----------
Length of 5' end seq. 553
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -