FC-IC0175
Library FC-IC
(Link to library)
Clone ID FC-IC0175
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13957-1
Original site URL
Representative seq. ID FC-IC0175F
(Link to Original site)
Representative DNA sequence
>FC-IC0175 (FC-IC0175Q) /CSM/FC-IC/FC-IC0175Q.Seq.d/
ACAATGGAAGACGTAGCAAAAGCTGCANAAGCAGGTTGTGCAAATGTGGTAACAACCTTA
CCAATTTGGGTTGTAAATACCCGTTTACAAATTAATTCCGATAAGGGTATTGTTGGACAA
TTCAAATACATTATTAAGAATGAAGGATAGTGGTGGATTATACAAAGGTANAATTCCAGC
TTAAATCTTAGTATCAAATCCATCTGTTCAATXXXXXXXXXX
sequence update 2001. 7.13
Translated Amino Acid sequence
TMEDVAKAAXAGCANVVTTLPIWVVNTRLQINSDKGIVGQFKYIIKNEG*wwiiqrxnss
lnlsiksics---


Translated Amino Acid sequence (All Frames)
Frame A:
TMEDVAKAAXAGCANVVTTLPIWVVNTRLQINSDKGIVGQFKYIIKNEG*wwiiqrxnss
lnlsiksics---


Frame B:
qwkt*qklxkqvvqmw*qpyqfgl*ipvyklipirvlldnsntllrmkdsgglykgxipa
*ilvsnpsvq---


Frame C:
ngrrskscxsrlckcgnnltnlgckypftn*fr*gycwtiqihy*e*rivvdytkvxfql
ks*yqihlf---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC0175 (FC-IC0175Q) /CSM/FC-IC/FC-IC0175Q.Seq.d/ 408 e-113
VSG409 (VSG409Q) /CSM/VS/VSG4-A/VSG409Q.Seq.d/ 295 1e-79
VFN266 (VFN266Q) /CSM/VF/VFN2-C/VFN266Q.Seq.d/ 295 1e-79
VFL141 (VFL141Q) /CSM/VF/VFL1-B/VFL141Q.Seq.d/ 295 1e-79
VFK555 (VFK555Q) /CSM/VF/VFK5-C/VFK555Q.Seq.d/ 295 1e-79
VFI234 (VFI234Q) /CSM/VF/VFI2-B/VFI234Q.Seq.d/ 295 1e-79
SSI511 (SSI511Q) /CSM/SS/SSI5-A/SSI511Q.Seq.d/ 295 1e-79
SHJ167 (SHJ167Q) /CSM/SH/SHJ1-C/SHJ167Q.Seq.d/ 295 1e-79
AFO691 (AFO691Q) /CSM/AF/AFO6-D/AFO691Q.Seq.d/ 289 9e-78
VFK858 (VFK858Q) /CSM/VF/VFK8-C/VFK858Q.Seq.d/ 287 3e-77

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115680|AC115680.2 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence. 214 4e-74 2
AG171123|AG171123.1 Pan troglodytes DNA, clone: RP43-040F09.T7. 44 0.75 1
AC142306|AC142306.1 Pan troglodytes BAC clone RP43-131E14 from Y, complete sequence. 36 1.2 2
AC144381|AC144381.2 Pan troglodytes BAC clone RP43-12C6 from Y, complete sequence. 36 1.4 2
BQ708240|BQ708240.1 AGENCOURT_8475171 NIH_MGC_113 Homo sapiens cDNA clone IMAGE:6301553 5', mRNA sequence. 34 2.2 2
AX509434|AX509434.1 Sequence 4129 from Patent WO0216655. 42 2.9 1
D13044|D13044.1 Arabidopsis thaliana DNA for RD29B, RD29A, complete cds. 42 2.9 1
AB019226|AB019226.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24M7. 42 2.9 1
BH418565|BH418565.1 BOGJA28TF BOGJ Brassica oleracea genomic clone BOGJA28, DNA sequence. 30 6.5 2
BH448865|BH448865.1 BOGRJ60TR BOGR Brassica oleracea genomic clone BOGRJ60, DNA sequence. 30 7.5 2
dna update 2003.12. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116920_32(AC116920|pid:none) Dictyostelium discoideum chromoso... 90 1e-22
AF055463_1(AF055463|pid:none) Mus musculus peroxisomal integral ... 44 0.002
BC166457_1(BC166457|pid:none) Rattus norvegicus solute carrier f... 44 0.002
(O70579) RecName: Full=Peroxisomal membrane protein PMP34; AltNa... 43 0.004
AK300553_1(AK300553|pid:none) Homo sapiens cDNA FLJ57596 complet... 43 0.004
CQ871238_1(CQ871238|pid:none) Sequence 7 from Patent WO2004078112. 43 0.004
AB047148_1(AB047148|pid:none) Arabidopsis thaliana mRNA for 36kD... 32 0.004
AY088311_1(AY088311|pid:none) Arabidopsis thaliana clone 5504 mR... 32 0.004
AP007162_532(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 35 0.004
AK298215_1(AK298215|pid:none) Homo sapiens cDNA FLJ57410 complet... 42 0.005
protein update 2009. 5.21
PSORT

psg: 0.75 gvh: 0.40 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for FC-IC0175 is cyt

5' end seq. ID FC-IC0175F
5' end seq.
>FC-IC0175F.Seq
ACAATGGAAGACGTAGCAAAAGCTGCANAAGCAGGTTGTGCAAATGTGGTAACAACCTTA
CCAATTTGGGTTGTAAATACCCGTTTACAAATTAATTCCGATAAGGGTATTGTTGGACAA
TTCAAATACATTATTAAGAATGAAGGATAGTGGTGGATTATACAAAGGTANAATTCCAGC
TTAAATCTTAGTATCAAATCCATCTGTTCAAT----------
Length of 5' end seq. 212
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -