>FC-IC0095 (FC-IC0095Q) /CSM/FC-IC/FC-IC0095Q.Seq.d/
GCATTGCCAAATTCACCATCTGTGTCATATCCAGTTAATTCATGTATTCAATCAAGCACT
GTTTATATTAACATGAATTCTGGTAAGACAAACACCCCATTTTACTATAAATTGACAACA
TCATCAACCCCATACATTGCACAAAATAGTTTTATTTACACTTATATGGGAGAACAATGC
TCACCAAATAACATTGTCGCATTGGAATACTATCTCAATGATACTAGATTGTTTAAAAAC
CTATCTTCCTATCTCTACTATTGCGATCCAAATACACATTTCCCCAAAXXXXXXXXXX

ALPNSPSVSYPVNSCIQSSTVYINMNSGKTNTPFYYKLTTSSTPYIAQNSFIYTYMGEQC
SPNNIVALEYYLNDTRLFKNLSSYLYYCDPNTHFP---

Frame A:
ALPNSPSVSYPVNSCIQSSTVYINMNSGKTNTPFYYKLTTSSTPYIAQNSFIYTYMGEQC
SPNNIVALEYYLNDTRLFKNLSSYLYYCDPNTHFP---


Frame B:
hcqihhlchiqlihvfnqalfilt*ilvrqtphftin*qhhqphtlhkivlftliwenna
hqitlshwntismildclktylpistiaiqihisp---


Frame C:
iakfticviss*fmysikhcly*hefw*dkhpill*idniinpihctk*fylhlygrtml
tk*hcrigilsq*y*iv*kpiflslllrskytfpq---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0095 (FC-IC0095Q) /CSM/FC-IC/FC-IC0095Q.Seq.d/                   571   e-162
VHK874 (VHK874Q) /CSM/VH/VHK8-D/VHK874Q.Seq.d/                         32   4.5
VSG178 (VSG178Q) /CSM/VS/VSG1-D/VSG178Q.Seq.d/                         32   4.5
VSF284 (VSF284Q) /CSM/VS/VSF2-D/VSF284Q.Seq.d/                         32   4.5
VSF253 (VSF253Q) /CSM/VS/VSF2-C/VSF253Q.Seq.d/                         32   4.5
VHP795 (VHP795Q) /CSM/VH/VHP7-D/VHP795Q.Seq.d/                         32   4.5
VHN487 (VHN487Q) /CSM/VH/VHN4-D/VHN487Q.Seq.d/                         32   4.5
VHK874 (VHK874Q) /CSM/VH/VHK8-D/VHK874Q.Seq.d/                         32   4.5
VHJ180 (VHJ180Q) /CSM/VH/VHJ1-D/VHJ180Q.Seq.d/                         32   4.5
VHI281 (VHI281Q) /CSM/VH/VHI2-D/VHI281Q.Seq.d/                         32   4.5

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC021922|AC021922.2 Homo sapiens clone RP11-25K11, LOW-PASS SEQUENCE SAMPLING.    38   0.10   2
AC079441|AC079441.26 Mus musculus clone rp23-349b16 map 17 strain C57BL/6J, WORKING DRAFT SEQUENCE, 10 ordered pieces.    46   0.26   1
AC116139|AC116139.4 Mus musculus clone RP23-126C4, WORKING DRAFT SEQUENCE, 5 ordered pieces.    46   0.26   1
AC068815|AC068815.2 Homo sapiens chromosome 2 clone RP11-478A15 map 2, WORKING DRAFT SEQUENCE, 26 unordered pieces.    32   0.31   7
BM222909|BM222909.1 K0128E04-3 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1-) cDNA Library (Long) Mus musculus cDNA clone K0128E04 3', mRNA sequence.    44   1.0    1
AC116521|AC116521.4 Mus musculus clone RP24-343N10, WORKING DRAFT SEQUENCE, 9 ordered pieces.    44   1.0    1
BX545855|BX545855.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-212N6.    34   1.2    5
AL049656|AL049656.1 Arabidopsis thaliana DNA chromosome 4, BAC clone  T6G15 (ESSA  project).    40   2.0    4
AC006955|AC006955.6 Arabidopsis thaliana chromosome 2 clone F28I8 map RNS1, complete sequence.    40   2.1    4
AC126271|AC126271.4 Mus musculus BAC clone RP23-237H9 from chromosome 5, complete sequence.    32   2.9    5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115680_23(AC115680|pid:none) Dictyostelium discoideum chromoso...    40   0.018
AC116979_41(AC116979|pid:none) Dictyostelium discoideum chromoso...    34   1.7
CP000962_3290(CP000962|pid:none) Clostridium botulinum A3 str. L...    32   5.0
(P22649) RecName: Full=Thymidine kinase;          EC=2.7.1.21;  ...    32   8.6
AP007157_375(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...    32   8.6

 psg: 0.82  gvh: 0.33  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 28.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for FC-IC0095 is mit

>FC-IC0095F.Seq
GCATTGCCAAATTCACCATCTGTGTCATATCCAGTTAATTCATGTATTCAATCAAGCACT
GTTTATATTAACATGAATTCTGGTAAGACAAACACCCCATTTTACTATAAATTGACAACA
TCATCAACCCCATACATTGCACAAAATAGTTTTATTTACACTTATATGGGAGAACAATGC
TCACCAAATAACATTGTCGCATTGGAATACTATCTCAATGATACTAGATTGTTTAAAAAC
CTATCTTCCTATCTCTACTATTGCGATCCAAATACACATTTCCCCAAA----------