FC-IC0067
Library FC-IC
(Link to library)
Clone ID FC-IC0067
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID FC-IC0067F
(Link to Original site)
Representative DNA sequence
>FC-IC0067 (FC-IC0067Q) /CSM/FC-IC/FC-IC0067Q.Seq.d/
ACATATATAATAATTTTTGTGTGAGAAGCACTTTCATCACTAAATTTAGAAACATTTTCT
GTGAACAATTGATGGACCAGATTCGTCATATTCTTCTTTTGAAATCCACATTTGTTGGAA
AGTTGAGAGTGAAGCTAAAATAGATCCACCAATCCAGACTGAGTATTTACGTTCTGGTGG
TGCAATGATTTTGATTTTCATTGTTGATGGTGCTAATGCAGTTAATTCTTTGTTCATACG
ATCTGCAATACCTGGGAACATAGTTGTXXXXXXXXXX
sequence update 2001. 7.13
Translated Amino Acid sequence
hi**flcekhfhh*i*khfl*TIDGPDSSYSSFEIHICWKVESEAKIDPPIQTEYLRSGG
AMILIFIVDGANAVNSLFIRSAIPGNIV---


Translated Amino Acid sequence (All Frames)
Frame A:
tyiiifv*ealsslnletfsvnn*wtrfvifff*nphlles*e*s*nrstnpd*vftfww
cndfdfhc*wc*cs*ffvhticntwehs---


Frame B:
hi**flcekhfhh*i*khfl*TIDGPDSSYSSFEIHICWKVESEAKIDPPIQTEYLRSGG
AMILIFIVDGANAVNSLFIRSAIPGNIV---


Frame C:
iynnfcvrstfitkfrnifceqlmdqirhilllkstfvgklrvklk*ihqsrlsiyvlvv
q*f*fsllmvlmqlilcsydlqylgt*l---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFK236 (VFK236Q) /CSM/VF/VFK2-B/VFK236Q.Seq.d/ 529 e-150
VFC286 (VFC286Q) /CSM/VF/VFC2-D/VFC286Q.Seq.d/ 529 e-150
SLF263 (SLF263Q) /CSM/SL/SLF2-C/SLF263Q.Seq.d/ 529 e-150
SLF220 (SLF220Q) /CSM/SL/SLF2-A/SLF220Q.Seq.d/ 529 e-150
SLA481 (SLA481Q) /CSM/SL/SLA4-D/SLA481Q.Seq.d/ 529 e-150
FC-IC1023 (FC-IC1023Q) /CSM/FC-IC/FC-IC1023Q.Seq.d/ 529 e-150
FC-IC0067 (FC-IC0067Q) /CSM/FC-IC/FC-IC0067Q.Seq.d/ 529 e-150
FC-AH11 (FC-AH11Q) /CSM/FC/FC-AH/FC-AH11Q.Seq.d/ 529 e-150
FC-IC0064 (FC-IC0064Q) /CSM/FC-IC/FC-IC0064Q.Seq.d/ 525 e-148
VFB424 (VFB424Q) /CSM/VF/VFB4-A/VFB424Q.Seq.d/ 523 e-148

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 529 0.0 3
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 381 0.0 5
K02954|K02954.1 Slime mold (D.discoideum) actin 2-sub 1 gene, 3' end. 424 e-137 2
X03282|X03282.1 dictyostelium discoideum gene for actin A12. 440 e-120 1
AX771242|AX771242.1 Sequence 5 from Patent WO03034275. 373 e-113 3
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence. 373 e-102 2
M14146|M14146.1 D.discoideum actin 15 gene, complete cds. 373 e-102 2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 347 e-102 2
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 379 e-101 4
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 371 3e-99 1
dna update 2003.12. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa... 151 8e-36
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli... 151 8e-36
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti... 151 8e-36
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum) 151 8e-36
(Q553U6) RecName: Full=Putative actin-22; &AC116305_3(AC116305|... 149 2e-35
(P02576) RecName: Full=Actin, plasmodial isoform; &ATFY(A29044;... 149 4e-35
(P02578) RecName: Full=Actin-1; &ATAX(A92886;A03004) &V00002_1(... 149 4e-35
AY582843_1(AY582843|pid:none) Amoebidium parasiticum actin gene,... 149 4e-35
(Q554S6) RecName: Full=Actin-17; AltName: Full=Actin-2-sub 2; &... 149 4e-35
K02960_1(K02960|pid:none) Dictyostelium discoideum actin 8 gene,... 148 5e-35
protein update 2009. 5.21
PSORT

psg: 0.75 gvh: 0.68 alm: 0.31 top: 0.60 tms: 0.07 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

44.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for FC-IC0067 is nuc

5' end seq. ID FC-IC0067F
5' end seq.
>FC-IC0067F.Seq
ACATATATAATAATTTTTGTGTGAGAAGCACTTTCATCACTAAATTTAGAAACATTTTCT
GTGAACAATTGATGGACCAGATTCGTCATATTCTTCTTTTGAAATCCACATTTGTTGGAA
AGTTGAGAGTGAAGCTAAAATAGATCCACCAATCCAGACTGAGTATTTACGTTCTGGTGG
TGCAATGATTTTGATTTTCATTGTTGATGGTGCTAATGCAGTTAATTCTTTGTTCATACG
ATCTGCAATACCTGGGAACATAGTTGT----------
Length of 5' end seq. 267
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -