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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0060
Library FC-IC
(Link to library)
Clone ID FC-IC0060
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14349-1
Original site URL
Representative seq. ID FC-IC0060F
(Link to Original site)
Representative DNA sequence 
>FC-IC0060 (FC-IC0060Q) /CSM/FC-IC/FC-IC0060Q.Seq.d/
ACCTTGGATTTCAACTTGGATNCCCCCACAGGCTTTACGTAAAGAGTCTTTTGATGAGGT
GGCCATCATTTTCTTTTTAATGTTGGCGGTATCTGGGCACCAGGCAACAAAACAGATTTT
GCTCTTTTGGGCACCTTCTTCTTTGTATTGATAGTCGAGGACAACGTATCTACATTCGTT
TTCTGGGAGACATTTGGTGAATTCATCGAATGAACAACCAGCTGGTAAGGTGGAGTCAAC
AATGATTTCTTTTGAATCGTCAGAGATTCTGTAGATGATACCACCATATTTACGACCTAA
CTTTAAATCGTTGAAGNTTGAAACGCAGCNNGGXXXXXXXXXX
sequence update 2001. 7.13
Translated Amino Acid sequence 
tldfnldxptgft*rvf**GGHHFLFNVGGIWAPGNKTDFALLGTFFFVLIVEDNVSTFV
FWETFGEFIE*ttsw*ggvnndff*ivrdsvddttiftt*l*ivex*naa---
Translated Amino Acid sequence (All Frames) 
Frame A:
tldfnldxptgft*rvf**GGHHFLFNVGGIWAPGNKTDFALLGTFFFVLIVEDNVSTFV
FWETFGEFIE*ttsw*ggvnndff*ivrdsvddttiftt*l*ivex*naa---


Frame B:
pwistwxppqalrkesfdevaiifflmlavsghqatkqillfwapssly**srttylhsf
sgrhlvnssneqpagkvestmisfesseil*mippylrpnfkslkxetqx---


Frame C:
lgfqlgxphrlyvksllmrwpsfsf*cwrylgtrqqnrfcsfghlllcidsrgqriyirf
lgdiw*ihrmnnqlvrwsqq*fllnrqrfcr*yhhiydltlnr*xlkrsx---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0060 (FC-IC0060Q) /CSM/FC-IC/FC-IC0060Q.Seq.d/                   640   0.0
VSJ890 (VSJ890Q) /CSM/VS/VSJ8-D/VSJ890Q.Seq.d/                        622   e-178
VSJ584 (VSJ584Q) /CSM/VS/VSJ5-D/VSJ584Q.Seq.d/                        622   e-178
VSJ550 (VSJ550Q) /CSM/VS/VSJ5-C/VSJ550Q.Seq.d/                        622   e-178
VSJ437 (VSJ437Q) /CSM/VS/VSJ4-B/VSJ437Q.Seq.d/                        622   e-178
VSJ243 (VSJ243Q) /CSM/VS/VSJ2-B/VSJ243Q.Seq.d/                        622   e-178
VSI135 (VSI135Q) /CSM/VS/VSI1-B/VSI135Q.Seq.d/                        622   e-178
VSG665 (VSG665Q) /CSM/VS/VSG6-C/VSG665Q.Seq.d/                        622   e-178
VSF674 (VSF674Q) /CSM/VS/VSF6-D/VSF674Q.Seq.d/                        622   e-178
VSE444 (VSE444Q) /CSM/VS/VSE4-B/VSE444Q.Seq.d/                        622   e-178
own update 2001. 9.19
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D37980|D37980.1 Dictyostelium discoidium DDCOF1 gene for cofilin, complete cds (exon1-2).   622   e-175  1
D37981|D37981.1 Dictyostelium discoidium DDCOF2 gene for cofilin, complete cds.   622   e-175  1
X04004|X04004.1 Dictyostelium discoideum mRNA for contact site A (csA) protein.   168   3e-38  1
AC096355|AC096355.12 Rattus norvegicus clone CH230-34N3, WORKING DRAFT SEQUENCE, 3 unordered pieces.    44   1.2    2
AC135132|AC135132.2 Rattus norvegicus clone CH230-240G18, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44   1.2    1
L46781|L46781.1 Rattus norvegicus plasma membrane calcium ATPase isoform 3 gene, exon 12.    44   1.2    1
BQ108127|BQ108127.1 shrpID000306 LvG Litopenaeus vannamei cDNA, mRNA sequence.    44   1.2    1
CB784341|CB784341.1 AMGNNUC:NRHY4-00139-G3-A W Rat hypothalamus (10464) Rattus norvegicus cDNA clone nrhy4-00139-g3 5', mRNA sequence.    44   1.2    1
CB707648|CB707648.1 AMGNNUC:NRHY4-00139-E3-A W Rat hypothalamus (10464) Rattus norvegicus cDNA clone nrhy4-00139-e3 5', mRNA sequence.    44   1.2    1
J05087|J05087.1 Rat calmodulin-sensitive plasma membrane Ca2+-transporting ATPase (PMCA3) mRNA, complete cds.    44   1.2    1
dna update 2003.12. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54706) RecName: Full=Cofilin-1;  &D37980_1(D37980|pid:none) &D...   225   4e-58
(Q96VU9) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi...   109   3e-23
AY428595_1(AY428595|pid:none) Helianthus annuus clone HA10-7 put...   109   3e-23
(P37167) RecName: Full=Actophorin;  &M93361_1(M93361|pid:none)        108   6e-23
FM992692_38(FM992692|pid:none) Candida dubliniensis CD36 chromos...   107   1e-22
CP000501_299(CP000501|pid:none) Pichia stipitis CBS 6054 chromos...   104   1e-21
EU961226_1(EU961226|pid:none) Zea mays clone 233661 actin-depoly...   103   2e-21
(Q9HF97) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi...   102   4e-21
(Q6EUH7) RecName: Full=Actin-depolymerizing factor 1; AltName: F...   102   4e-21
(Q6CQ22) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi...   102   4e-21
protein update 2009. 5.21
PSORT 

 psg: 0.89  gvh: 0.51  alm: 0.33  top: 0.40  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system

>> prediction for FC-IC0060 is cyt
5' end seq. ID FC-IC0060F
5' end seq. 
>FC-IC0060F.Seq
ACCTTGGATTTCAACTTGGATNCCCCCACAGGCTTTACGTAAAGAGTCTTTTGATGAGGT
GGCCATCATTTTCTTTTTAATGTTGGCGGTATCTGGGCACCAGGCAACAAAACAGATTTT
GCTCTTTTGGGCACCTTCTTCTTTGTATTGATAGTCGAGGACAACGTATCTACATTCGTT
TTCTGGGAGACATTTGGTGAATTCATCGAATGAACAACCAGCTGGTAAGGTGGAGTCAAC
AATGATTTCTTTTGAATCGTCAGAGATTCTGTAGATGATACCACCATATTTACGACCTAA
CTTTAAATCGTTGAAGNTTGAAACGCAGCNNGG----------
Length of 5' end seq. 333
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -