>FC-IC0027 (FC-IC0027Q) /CSM/FC-IC/FC-IC0027Q.Seq.d/
ACAAATATTCTAAAATCGCCTTGAATGAATCAAAAGTTTCATCAGCAGACATTTCAACCT
TGCCTTCTCTTTCAATGAAATTTCTACCAATTAGCGCATTTACAACATTTGAACGTGAGA
TAATCAATGCTTTATGTGCAAAAATTGATCTGCCTTCAACGATGAATTGAATATCAGATA
GAATCTTTTTAGTAAAGAATAGCTCTTTACTAGTTTCACCCAATTGGTCATTTAAGAAAG
TGCCAATCGATGGATTCAAATCTTCATTACCACCCAACACATTCTTACAAGCACTTGCTA
AATACTTGAAGCCGACACTCTCTGCCAATGCAATTGTCTCTTGAAGTTGGTCATTCTTAT
CAAGGTAATTCAACACACCAGTGTAAAGAAACTCAATGAATCTATTGAAAACACGACGAT
TTATTGAACTGTCGATTGAGATCTCGACAAATTCACCACTTGATTTAGTGCCGTCATCAT
TCTTTTCGTTTGGTTTAATTGTAACACTACGAATATTTTTAACCTTACCCTCATTTAAAT
CATCCAATTTGAACTCAGCTTGGTCAGAGGATAATGTGXXXXXXXXXX

kyskialneskvssadistlpslsmkflpisafttfereiinalcakidlpstmn*isdr
iflvknssllvspnwsfkkvpidgfksslppntflqalakylkptlsanaivs*swsfls
r*fntpv*RNSMNLLKTRRFIELSIEISTNSPLDLVPSSFFSFGLIVTLRIFLTLPSFKS
SNLNSAWSEDN---

Frame A:
tnilksp*mnqkfhqqtfqpcllfq*nfyqlahlqhlnvr*smlyvqkliclqr*ieyqi
esf**rialy*fhpighlrkcqsmdsnlhyhpthsykhllnt*srhslpmqlslevghsy
qgnsthqcketq*iy*khddllncrlrsrqihhli*crhhsfrlv*l*hyeyf*pyphln
hpi*tqlgqrim---


Frame B:
qif*nrle*iksfisrhfnlafsfneistn*riyni*t*dnqcfmckn*safndelnir*
nlfske*lftsftqlvi*esanrwiqifittqhiltstc*ileadtlcqcncllklvili
kviqhtsvkklnesienttiy*tvd*dldkftt*fsaviilfvwfncnttnifnltli*i
iqfelslvrg*c---


Frame C:
kyskialneskvssadistlpslsmkflpisafttfereiinalcakidlpstmn*isdr
iflvknssllvspnwsfkkvpidgfksslppntflqalakylkptlsanaivs*swsfls
r*fntpv*RNSMNLLKTRRFIELSIEISTNSPLDLVPSSFFSFGLIVTLRIFLTLPSFKS
SNLNSAWSEDN---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0027 (FC-IC0027Q) /CSM/FC-IC/FC-IC0027Q.Seq.d/                  1146   0.0
FC-IC1620 (FC-IC1620Q) /CSM/FC-IC/FC-IC1620Q.Seq.d/                  1114   0.0
FC-IC0228 (FC-IC0228Q) /CSM/FC-IC/FC-IC0228Q.Seq.d/                  1114   0.0
FC-IC1197 (FC-IC1197Q) /CSM/FC-IC/FC-IC1197Q.Seq.d/                  1106   0.0
FC-IC1196 (FC-IC1196Q) /CSM/FC-IC/FC-IC1196Q.Seq.d/                  1106   0.0
FC-IC0284 (FC-IC0284Q) /CSM/FC-IC/FC-IC0284Q.Seq.d/                  1102   0.0
FC-IC1572 (FC-IC1572Q) /CSM/FC-IC/FC-IC1572Q.Seq.d/                  1100   0.0
FC-IC0242 (FC-IC0242Q) /CSM/FC-IC/FC-IC0242Q.Seq.d/                  1086   0.0
FC-IC0621 (FC-IC0621Q) /CSM/FC-IC/FC-IC0621Q.Seq.d/                  1053   0.0
FC-IC0005 (FC-IC0005Q) /CSM/FC-IC/FC-IC0005Q.Seq.d/                   531   e-150

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF310886|AF310886.1 Dictyostelium discoideum RacA (racA) gene, complete cds.  1114   0.0    1
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    36   0.003  10
AC090141|AC090141.9 Homo sapiens chromosome 8, clone RP11-140A18, complete sequence.    40   0.043  4
AL139157|AL139157.10 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP5-837A3.    36   1.8    6
AC145932|AC145932.2 Gallus gallus chromosome UNK clone CH261-37K10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    44   2.1    1
AC017095|AC017095.7 Homo sapiens BAC clone RP11-516C4 from 2, complete sequence.    44   2.1    1
AC027493|AC027493.3 Homo sapiens chromosome 3 clone RP11-585F20 map 3, WORKING DRAFT SEQUENCE, 13 unordered pieces.    32   2.3    8
AL138714|AL138714.9 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-121J7.    38   2.8    5
M69197|M69197.1 Human haptoglobin and haptoglobin-related protein (HP and HPR) genes, complete cds.    36   5.6    3
AC006228|AC006228.5 Genomic sequence for Arabidopsis thaliana BAC F5J5, complete sequence.    38   6.0    4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB018260_1(AB018260|pid:none) Homo sapiens mRNA for KIAA0717 pro...    60   4e-08
AK292863_1(AK292863|pid:none) Homo sapiens cDNA FLJ76193 complet...    60   4e-08
BC148035_1(BC148035|pid:none) Bos taurus Rho-related BTB domain ...    59   9e-08
CR859023_1(CR859023|pid:none) Pongo abelii mRNA; cDNA DKFZp469P2...    58   2e-07
BC026836_1(BC026836|pid:none) Mus musculus Rho-related BTB domai...    58   2e-07
AK122354_1(AK122354|pid:none) Mus musculus mRNA for mKIAA0717 pr...    57   3e-07
(Q91V93) RecName: Full=Rho-related BTB domain-containing protein...    57   3e-07
AK171295_1(AK171295|pid:none) Mus musculus NOD-derived CD11c +ve...    57   3e-07
(O94844) RecName: Full=Rho-related BTB domain-containing protein...    54   2e-06
BC144800_1(BC144800|pid:none) Mus musculus Rho-related BTB domai...    54   3e-06

 psg: 0.75  gvh: 0.52  alm: 0.31  top: 0.87  tms: 0.07  mit: 0.37  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for FC-IC0027 is nuc

>FC-IC0027F.Seq
ACAAATATTCTAAAATCGCCTTGAATGAATCAAAAGTTTCATCAGCAGACATTTCAACCT
TGCCTTCTCTTTCAATGAAATTTCTACCAATTAGCGCATTTACAACATTTGAACGTGAGA
TAATCAATGCTTTATGTGCAAAAATTGATCTGCCTTCAACGATGAATTGAATATCAGATA
GAATCTTTTTAGTAAAGAATAGCTCTTTACTAGTTTCACCCAATTGGTCATTTAAGAAAG
TGCCAATCGATGGATTCAAATCTTCATTACCACCCAACACATTCTTACAAGCACTTGCTA
AATACTTGAAGCCGACACTCTCTGCCAATGCAATTGTCTCTTGAAGTTGGTCATTCTTAT
CAAGGTAATTCAACACACCAGTGTAAAGAAACTCAATGAATCTATTGAAAACACGACGAT
TTATTGAACTGTCGATTGAGATCTCGACAAATTCACCACTTGATTTAGTGCCGTCATCAT
TCTTTTCGTTTGGTTTAATTGTAACACTACGAATATTTTTAACCTTACCCTCATTTAAAT
CATCCAATTTGAACTCAGCTTGGTCAGAGGATAATGTG----------