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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS495
Library CH
(Link to library)
Clone ID CHS495
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12401-1|Contig-U16471-1
Original site URL
Representative seq. ID CHS495P
(Link to Original site)
Representative DNA sequence 
>CHS495 (CHS495Q) /CSM/CH/CHS4-D/CHS495Q.Seq.d/
ACAAAATGTTGAATTACCAACCTATGATCAAAATGAATNGGCAAAATTAATTCATAAAGT
ATAGAATTGTAGTGGTTTAGTAAACTTTTTAGAAGCTTTCCAATATACTTGTTCTGTTTT
ACAACATGCATATGCTATCACAAGAGTATTTTATGAAATGTGTGAAGATGCTGTTGCAGA
TGGAGTTAGCTATTTAGAAATTCGTTTCTCTCCAGTACTTCATACAAGTTTTGGATTAAG
TTTATCAGAAGTTATGGAAGCAGTTTGTGATGGTATGGCCATAGCAGAGTTAAATCTTCC
AATAAAAGCTAGAATTATTGTTTGTGGTTTACGTCATTTAGATCCATCAATTTCCAAAGA
TTTAGCTGAAATCACTTGGCGTTATAGACATAAAGGTGCAATTGCATTTGATTTAGCAGG
ACCAGAAGACGGATTTTCAAGTAAACATCATAAAGAAGCATTTTCAATTATAAGAAATAA
AGGTATTAATTGTACATTACATAGTGXXXXXXXXXXAATGGTAATGGTTCACCTGCTGTA
AACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAA
CAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGAT
GAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCT
AAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAA
TTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGA
CAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATC
AAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCT
GTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAAT
AATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAA
ATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAA
TTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAAT
CATTCTTTNCTTTTTAAAAAAC
sequence update 2002.10.25
Translated Amino Acid sequence 
qnvelptydqnexaklihkv*NCSGLVNFLEAFQYTCSVLQHAYAITRVFYEMCEDAVAD
GVSYLEIRFSPVLHTSFGLSLSEVMEAVCDGMAIAELNLPIKARIIVCGLRHLDPSISKD
LAEITWRYRHKGAIAFDLAGPEDGFSSKHHKEAFSIIRNKGINCTLHS---

---NGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEV
AFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNV
EQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDEN
LVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhsxlfkk
Translated Amino Acid sequence (All Frames) 
Frame A:
tkc*itnl*sk*xgkins*siel*wfsklfrsfpiylfcfttcicyhksil*nv*rcccr
ws*lfrnsflsstsykfwikfirsygssl*wyghsrvkssnks*nyclwftsfrsinfqr
fs*nhlal*t*rcnci*fsrtrrrifk*ts*rsifnykk*ry*lyit*---

---NGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEV
AFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNV
EQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDEN
LVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhsxlfkk

Frame B:
qnvelptydqnexaklihkv*NCSGLVNFLEAFQYTCSVLQHAYAITRVFYEMCEDAVAD
GVSYLEIRFSPVLHTSFGLSLSEVMEAVCDGMAIAELNLPIKARIIVCGLRHLDPSISKD
LAEITWRYRHKGAIAFDLAGPEDGFSSKHHKEAFSIIRNKGINCTLHS---

---mvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmkl
pf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqml
nnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri
*fkrnnnlltklkin*kifnmnnksknnkin*ikkkinny*nknkiknnliilxflkn

Frame C:
kmlnyqpmikmnxqn*fikyrivvv**tf*klsnilvlfynmhmlsqeyfmkcvkmllqm
elai*kfvslqyfiqvld*vyqklwkqfvmvwp*qs*ifq*klellfvvyvi*ihqfpki
*lkslgvidikvqlhli*qdqktdfqvniikkhfql*eikvlivhyiv---

---w*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sc
lfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*
ttnr*tt*syqrisktrstketknstrercclle*c*ksst*igc*ig*k**tresr*ef
ssrettis*pn*ksikkyst*ttnprttr*iksrkkstiirtrtkskii*sffxf*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS495 (CHS495Q) /CSM/CH/CHS4-D/CHS495Q.Seq.d/                       1562   0.0
VHD722 (VHD722Q) /CSM/VH/VHD7-A/VHD722Q.Seq.d/                        973   0.0
VHI592 (VHI592Q) /CSM/VH/VHI5-D/VHI592Q.Seq.d/                        803   0.0
SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/                        605   e-172
SHL890 (SHL890Q) /CSM/SH/SHL8-D/SHL890Q.Seq.d/                        605   e-172
SHL879 (SHL879Q) /CSM/SH/SHL8-D/SHL879Q.Seq.d/                        605   e-172
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                        605   e-172
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        605   e-172
SHL865 (SHL865Q) /CSM/SH/SHL8-C/SHL865Q.Seq.d/                        605   e-172
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        605   e-172
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   605   0.0    5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   6e-25  1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   0.031  7
BH133394|BH133394.1 ENTNI62TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38   0.037  2
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   0.037  11
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   0.11   14
AC087241|AC087241.11 Homo sapiens 12p BAC RP11-268P4 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    34   0.13   7
AC098999|AC098999.8 Rattus norvegicus clone CH230-186P20, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    36   0.24   2
AC134802|AC134802.2 Rattus norvegicus clone CH230-461P11, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    36   0.24   2
AX344618|AX344618.1 Sequence 43 from Patent WO0200927.             42   0.31   3
dna update 2005.12. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54KF3) RecName: Full=Probable adenosine deaminase;          EC...   335   2e-90
(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   244   4e-63
CP001359_114(CP001359|pid:none) Anaeromyxobacter dehalogenans 2C...   140   9e-32
CP000251_97(CP000251|pid:none) Anaeromyxobacter dehalogenans 2CP...   140   9e-32
CP000769_100(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, co...   138   3e-31
CP001100_357(CP001100|pid:none) Chloroherpeton thalassium ATCC 3...   132   2e-29
CP000854_1193(CP000854|pid:none) Mycobacterium marinum M, comple...   119   2e-25
(A0PNJ1) Adenosine deaminase (EC 3.5.4.4) (Adenosine aminohydrol...   119   2e-25
CP000159_653(CP000159|pid:none) Salinibacter ruber DSM 13855, co...   116   2e-24
CU458896_3641(CU458896|pid:none) Mycobacterium abscessus chromos...   114   7e-24
protein update 2009. 4.13
PSORT 

 psg: 0.75  gvh: 0.58  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHS495 is nuc
5' end seq. ID CHS495F
5' end seq. 
>CHS495F.Seq
ACAAAATGTTGAATTACCAACCTATGATCAAAATGAATNGGCAAAATTAATTCATAAAGT
ATAGAATTGTAGTGGTTTAGTAAACTTTTTAGAAGCTTTCCAATATACTTGTTCTGTTTT
ACAACATGCATATGCTATCACAAGAGTATTTTATGAAATGTGTGAAGATGCTGTTGCAGA
TGGAGTTAGCTATTTAGAAATTCGTTTCTCTCCAGTACTTCATACAAGTTTTGGATTAAG
TTTATCAGAAGTTATGGAAGCAGTTTGTGATGGTATGGCCATAGCAGAGTTAAATCTTCC
AATAAAAGCTAGAATTATTGTTTGTGGTTTACGTCATTTAGATCCATCAATTTCCAAAGA
TTTAGCTGAAATCACTTGGCGTTATAGACATAAAGGTGCAATTGCATTTGATTTAGCAGG
ACCAGAAGACGGATTTTCAAGTAAACATCATAAAGAAGCATTTTCAATTATAAGAAATAA
AGGTATTAATTGTACATTACATAGTGNNNNNNNNNN
Length of 5' end seq. 516
3' end seq. ID CHS495Z
3' end seq. 
>CHS495Z.Seq
NNNNNNNNNNAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAAT
GGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACA
TTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGT
TGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATT
AGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACT
TAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGT
TGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACA
AAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGC
TCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAA
TTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCA
ACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATT
ATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTCTTTNCTTTTTAAAAAAC
Length of 3' end seq. 716
Connected seq. ID CHS495P
Connected seq. 
>CHS495P.Seq
ACAAAATGTTGAATTACCAACCTATGATCAAAATGAATNGGCAAAATTAATTCATAAAGT
ATAGAATTGTAGTGGTTTAGTAAACTTTTTAGAAGCTTTCCAATATACTTGTTCTGTTTT
ACAACATGCATATGCTATCACAAGAGTATTTTATGAAATGTGTGAAGATGCTGTTGCAGA
TGGAGTTAGCTATTTAGAAATTCGTTTCTCTCCAGTACTTCATACAAGTTTTGGATTAAG
TTTATCAGAAGTTATGGAAGCAGTTTGTGATGGTATGGCCATAGCAGAGTTAAATCTTCC
AATAAAAGCTAGAATTATTGTTTGTGGTTTACGTCATTTAGATCCATCAATTTCCAAAGA
TTTAGCTGAAATCACTTGGCGTTATAGACATAAAGGTGCAATTGCATTTGATTTAGCAGG
ACCAGAAGACGGATTTTCAAGTAAACATCATAAAGAAGCATTTTCAATTATAAGAAATAA
AGGTATTAATTGTACATTACATAGTG----------AATGGTAATGGTTCACCTGCTGTA
AACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAA
CAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGAT
GAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCT
AAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAA
TTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGA
CAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATC
AAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCT
GTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAAT
AATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAA
ATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAA
TTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAAT
CATTCTTTNCTTTTTAAAAAAC
Length of connected seq. 1212
Full length Seq ID -
Full length Seq. -
Length of full length seq. -