>CHS494 (CHS494Q) /CSM/CH/CHS4-D/CHS494Q.Seq.d/
XXXXXXXXXXGTCAATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGT
ATGGTTTACAGTTGTACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAAC
TCTGGTGCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGA
GTTTGTTCTTCCGATTGGTATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATT
CAATTCGATAGAAGATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAAC
AATACTGCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCA
TTTGTTTGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTT
GGTGCTGTTGTTTTAGGTGCTGCTAT

---QCTQTPTAKCDLGDKCMVYSCTLEGGCNATQRVCPNSGACKIGYCEPGFGCKLKDRV
CSSDWYCIEAQCDAKYGCIQFDRRCAPDNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPF
VCQKAALVSTAVIASVVVVGAVVLGAA

Frame A:
---smhsnsnc*m*fg**myglqlylgrwl*cnstclsklwcl*nwll*twfrl*ikg*s
lffrlvly*ssm*ckiwlhsir*kmcs****msrrclckqycyr*k*wkmyf*rl*skti
clskscfsfnccyckcccswcccfrccy


Frame B:
---QCTQTPTAKCDLGDKCMVYSCTLEGGCNATQRVCPNSGACKIGYCEPGFGCKLKDRV
CSSDWYCIEAQCDAKYGCIQFDRRCAPDNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPF
VCQKAALVSTAVIASVVVVGAVVLGAA


Frame C:
---nalklqllnviwvinvwftvvpwkvvvmqlnvfvqtlvlvklvivnlvsvvn*rief
vlpigivlklnvmqnmvafnsiedvlliivnvkkvsv*tillsvkmmenvflkimiqnhl
fvkkll*fqllllqvll*lvllf*vll

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ874 (CHQ874Q) /CSM/CH/CHQ8-D/CHQ874Q.Seq.d/                        864   0.0
SSD152 (SSD152Q) /CSM/SS/SSD1-C/SSD152Q.Seq.d/                        864   0.0
SLB259 (SLB259Q) /CSM/SL/SLB2-C/SLB259Q.Seq.d/                        864   0.0
SHL876 (SHL876Q) /CSM/SH/SHL8-D/SHL876Q.Seq.d/                        864   0.0
SHL713 (SHL713Q) /CSM/SH/SHL7-A/SHL713Q.Seq.d/                        864   0.0
SHL665 (SHL665Q) /CSM/SH/SHL6-C/SHL665Q.Seq.d/                        864   0.0
SHL603 (SHL603Q) /CSM/SH/SHL6-A/SHL603Q.Seq.d/                        864   0.0
SHL544 (SHL544Q) /CSM/SH/SHL5-B/SHL544Q.Seq.d/                        864   0.0
SHL480 (SHL480Q) /CSM/SH/SHL4-D/SHL480Q.Seq.d/                        864   0.0
SHL161 (SHL161Q) /CSM/SH/SHL1-C/SHL161Q.Seq.d/                        864   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    66   7e-07  1
CX053834|CX053834.1 UCRCS09_8E08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-8E08-I15-1-5.g, mRNA sequence.    50   0.039  1
CC946427|CC946427.1 BOIFV20TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFV20, genomic survey sequence.    50   0.039  1
CC075688|CC075688.1 CSU-K33r.25G4.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.25G4, DNA sequence.    50   0.039  1
BH960705|BH960705.1 odd88f07.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    50   0.039  1
AR549621|AR549621.1 Sequence 4752 from patent US 6747137.          46   0.11   2
AL287678|AL287678.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 105D19 of library G from Tetraodon nigroviridis.    38   0.32   2
CX118034|CX118034.1 EI112L19 A normalized whole-life-cycle cDNA library of rice Oryza sativa (indica cultivar-group) cDNA clone EI112L19 5', mRNA sequence.    46   0.61   1
CB652801|CB652801.1 OSJNEc03D04.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA clone OSJNEc03D04 5', mRNA sequence.    46   0.61   1
CB648789|CB648789.1 ---.    46   0.61   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                277   9e-74
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   135   4e-31
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   128   5e-29
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   117   9e-26
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                114   1e-24
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 96   5e-19
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 87   2e-16
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    57   1e-07
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    54   1e-06
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    52   8e-06

 psg: 0.68  gvh: 0.57  alm: 0.19  top: 0.60  tms: 0.07  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHS494 is cyt

>CHS494Z.Seq
NNNNNNNNNNGTCAATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGT
ATGGTTTACAGTTGTACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAAC
TCTGGTGCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGA
GTTTGTTCTTCCGATTGGTATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATT
CAATTCGATAGAAGATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAAC
AATACTGCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCA
TTTGTTTGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTT
GGTGCTGTTGTTTTAGGTGCTGCTAT