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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS493
Library CH
(Link to library)
Clone ID CHS493
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13024-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHS493 (CHS493Q) /CSM/CH/CHS4-D/CHS493Q.Seq.d/
XXXXXXXXXXTTGATTTCACTCATGGTACCATTCAAGGTGTTGGTGCTCTTAAATGTGGT
ACTTGTAACTTTGCCAACAAGATCGCTGCTAACCTCAACATTGTTGGTAACGTTAAAATG
GCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTAATGTCAATCACCACCTCAACC
CAAACCTCAATCTCTCAATCATCAACCAAGACTGTCAACGGTAAGACCACCACTCAATCA
TCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTTCCAATGATCGTTTGTTCAGGT
ACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTCAGAAGCCAATCAAGCTAAAATT
GCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCA
GTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCT
GCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAAAGTTTGGTCAATTGTAAATTCA
CCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATTGATTCAACTCCTCCTCTCCAA
TGACAATAAATTAAAATAATACAACTCATTCTTATTTTTCTTTATTCTAACCAATGTATT
TGTCAATTAACTTATTAACTTTTTAGACACACCCTT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---DFTHGTIQGVGALKCGTCNFANKIAANLNIVGNVKMAATATVYANIDALMSITTSTQ
TSISQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVASEANQAKIA
SGTVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAASKVWSIVNSP
CNCECGLKRL*idstpplq*q*ikiiqliliflysnqcicqlty*lfrhtl
Translated Amino Acid sequence (All Frames) 
Frame A:
---*fhswyhsrcwcs*mwyl*lcqqdrc*pqhcw*r*ngrncnclckh*cfnvnhhlnp
nlnlsiinqdcqr*dhhsiiikliiihl*tirsndrlfryc*ccw*pqcrclrsqss*nc
lwyciqihlspsc*r*clls*lshlkhccccstscrccccccpkscygccl*slvnckft
m*l*mwieeiin*fnssspmtin*nntthsyfslf*pmylsinlltf*thp


Frame B:
---DFTHGTIQGVGALKCGTCNFANKIAANLNIVGNVKMAATATVYANIDALMSITTSTQ
TSISQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVASEANQAKIA
SGTVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAASKVWSIVNSP
CNCECGLKRL*idstpplq*q*ikiiqliliflysnqcicqlty*lfrhtl


Frame C:
---islmvpfkvlvllnvvlvtlptrslltstllvtlkwpqlqlsmqtlml*cqsppqpk
pqslnhqprlstvrpplnhhqahhhpslnnsfq*sfvqvllmllvtsmslpqkpiklklp
lvlysnssqpqllkvmspqlavspqalllllnklpvlllllpkkllwllplkfgql*ihh
vtvnvd*rdykliqlllsndnklk*ynsflfffiltnvfvn*linfldtp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS493 (CHS493Q) /CSM/CH/CHS4-D/CHS493Q.Seq.d/                        856   0.0
SLE342 (SLE342Q) /CSM/SL/SLE3-B/SLE342Q.Seq.d/                        848   0.0
SLA101 (SLA101Q) /CSM/SL/SLA1-A/SLA101Q.Seq.d/                        848   0.0
SHL563 (SHL563Q) /CSM/SH/SHL5-C/SHL563Q.Seq.d/                        848   0.0
SHL307 (SHL307Q) /CSM/SH/SHL3-A/SHL307Q.Seq.d/                        848   0.0
SHL203 (SHL203Q) /CSM/SH/SHL2-A/SHL203Q.Seq.d/                        848   0.0
SHK865 (SHK865Q) /CSM/SH/SHK8-C/SHK865Q.Seq.d/                        848   0.0
SHK762 (SHK762Q) /CSM/SH/SHK7-C/SHK762Q.Seq.d/                        848   0.0
SHK650 (SHK650Q) /CSM/SH/SHK6-C/SHK650Q.Seq.d/                        848   0.0
SHK536 (SHK536Q) /CSM/SH/SHK5-B/SHK536Q.Seq.d/                        848   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U83087|U83087.1 Dictyostelium discoideum rsc12 mRNA, partial cds.   848   0.0    2
AJ297856|AJ297856.1 Lucilia sericata partial bcd gene for bicoid protein.    50   0.063  1
AC162431|AC162431.1 Papio hamadryas clone RP41-121N17, WORKING DRAFT SEQUENCE.    48   0.25   1
AC156169|AC156169.2 Bos taurus clone CH240-50N13, *** SEQUENCING IN PROGRESS ***, 60 unordered pieces.    48   0.25   1
AC148223|AC148223.1 Colobus guereza clone CH272-19E23, WORKING DRAFT SEQUENCE, 4 ordered pieces.    48   0.25   1
AC127176|AC127176.3 Rattus norvegicus clone CH230-267P11, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48   0.25   1
AL395211|AL395211.1 T7 end of clone AR0AA022B11 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii.    48   0.25   1
AC110319|AC110319.5 Rattus norvegicus clone CH230-234D19, WORKING DRAFT SEQUENCE, 2 unordered pieces.    48   0.25   1
AL393003|AL393003.1 T7 end of clone AR0AA008B11 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii.    48   0.25   1
AC164878|AC164878.2 Mus musculus BAC clone RP23-364G24 from chromosome 13, complete sequence.    48   0.25   1
dna update 2005.12. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U83087_1(U83087|pid:none) Dictyostelium discoideum rsc12 mRNA, p...   255   8e-67
AY530539_1(AY530539|pid:none) Mimulus ringens deficiens (DEF) mR...    34   4.7
AY524011_1(AY524011|pid:none) Paulownia tomentosa deficiens (DEF...    33   6.1
protein update 2009. 1. 4
PSORT 

 psg: 0.75  gvh: 0.54  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: peroxisomal

>> prediction for CHS493 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHS493Z
3' end seq. 
>CHS493Z.Seq
NNNNNNNNNNTTGATTTCACTCATGGTACCATTCAAGGTGTTGGTGCTCTTAAATGTGGT
ACTTGTAACTTTGCCAACAAGATCGCTGCTAACCTCAACATTGTTGGTAACGTTAAAATG
GCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTAATGTCAATCACCACCTCAACC
CAAACCTCAATCTCTCAATCATCAACCAAGACTGTCAACGGTAAGACCACCACTCAATCA
TCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTTCCAATGATCGTTTGTTCAGGT
ACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTCAGAAGCCAATCAAGCTAAAATT
GCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCA
GTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCT
GCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAAAGTTTGGTCAATTGTAAATTCA
CCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATTGATTCAACTCCTCCTCTCCAA
TGACAATAAATTAAAATAATACAACTCATTCTTATTTTTCTTTATTCTAACCAATGTATT
TGTCAATTAACTTATTAACTTTTTAGACACACCCTT
Length of 3' end seq. 696
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -