>CHS490 (CHS490Q) /CSM/CH/CHS4-D/CHS490Q.Seq.d/
ATAATAATACAACAACAACAACAACATAATGTCAACACCTTTAAGAGGATCATCTCCTCA
AGTTTCATTTTATGAATCTGAACTTGATCAAGAAGGAGGCAGTGATGCCTCACACTTTAC
TTATAGAAATTATATGGAAGATGATAAAATTAATXXXXXXXXXXTNGTAATCCTNTCCCA
GCTTTCTTTGCTNGTGGTTTAAATGTTTCAATCTCTACCGATGATCCACTTCAATTCCAT
TACACTAAAGAACCTTTAATGGAGGAATACAGTATTGCAACTCAAGTTTGGAGATTATCA
GTTTGCGATATTTGTGAAATCGCTAGAAACTCAGTACTTCAAAGTGGTTTCGAACATAAT
GTAAAATCTCATTGGTTAGGTCCAGACTATGCAAACTCTGGTGGTAATGATATCAAAAAG
ACAAACATTAGTGATATTCGTGTTTGCTTTAGAAATGAAACCCTCATTGAGGAATTACAT
TTAATCTTAAAATCACTTCAAACTTTACCAAACTTTAAAAATTTAAATATTAATTTCTTA
TTGGATAAATTACCATCAGAAATTACAACTGGCAATGATTATAAATTGAAAAAAGCTCAA
CTAAAATTAAATGGTGNTAATAAATTAAGAAATTCTTCAGTTGGTTCAACTCCTAATAAT
GGTACTCCTTCTAGTTNTGGTACTCCATCATTAAGTAGTCNTGGTGCTATTGTTCATTTA
ATGAAAACTAAACCTTATATTCCACCACCTTTATCTTTAAATATTAAACAAGAAAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATACTAATACT
AATACAAATAGTAATAGTACTACTACTAATCAAGANANATTCAAAATCNNATAAATAAAA
ATAAAAAAAAA

**YNNNNNIMSTPLRGSSPQVSFYESELDQEGGSDASHFTYRNYMEDDKIN---

---XNPXPAFFAXGLNVSISTDDPLQFHYTKEPLMEEYSIATQVWRLSVCDICEIARNSV
LQSGFEHNVKSHWLGPDYANSGGNDIKKTNISDIRVCFRNETLIEELHLILKSLQTLPNF
KNLNINFLLDKLPSEITTGNDYKLKKAQLKLNGXNKLRNSSVGSTPNNGTPSSXGTPSLS
SXGAIVHLMKTKPYIPPPLSLNIKQENNNNNNNNNNNNNNNNNNNTNTNTNSNSTTTNQX
XFKIX*ikikk

Frame A:
iiiqqqqqhnvntfkriisssfil*i*t*srrrq*cltlyl*klygr**n*---

---x*sxpsflcxwfkcfnlyr*stsiplh*rtfnggiqycnssleiislryl*nr*kls
tskwfrt*ckislvrsrlcklww**yqkdkh**yscll*k*nph*gitfnlkitsnftkl
*kfky*flig*itirnynwq*l*ieksstkikwx**ikkffswfns**wysf*xwysiik
*swcycsfnen*tlysttfifky*trk******************y*y*yk***yyy*sr
xiqnxinknkkk

Frame B:
**YNNNNNIMSTPLRGSSPQVSFYESELDQEGGSDASHFTYRNYMEDDKIN---

---XNPXPAFFAXGLNVSISTDDPLQFHYTKEPLMEEYSIATQVWRLSVCDICEIARNSV
LQSGFEHNVKSHWLGPDYANSGGNDIKKTNISDIRVCFRNETLIEELHLILKSLQTLPNF
KNLNINFLLDKLPSEITTGNDYKLKKAQLKLNGXNKLRNSSVGSTPNNGTPSSXGTPSLS
SXGAIVHLMKTKPYIPPPLSLNIKQENNNNNNNNNNNNNNNNNNNTNTNTNSNSTTTNQX
XFKIX*ikikk

Frame C:
nntttttt*cqhl*edhllkfhfmnlnlikkeavmphtllieiiwkmikl---

---vilsqlsllvv*mfqslpmihfnsitlknl*wrntvlqlkfgdyqfaifvksletqy
fkvvsnim*nlig*vqtmqtlvvmiskrqtlvifvfalemkpslrnyi*s*nhfklyqtl
ki*ilisywinyhqklqlamiin*kkln*n*mvxin*eilqlvqllimvlllvxvlhh*v
vxvllfi**klnlifhhlyl*ilnkkiiiiiiiiiiiiiiiiiiililiqivivlllikx
xsksxk*k*kk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS490 (CHS490Q) /CSM/CH/CHS4-D/CHS490Q.Seq.d/                       1388   0.0
CHI850 (CHI850Q) /CSM/CH/CHI8-C/CHI850Q.Seq.d/                       1176   0.0
CHF561 (CHF561Q) /CSM/CH/CHF5-C/CHF561Q.Seq.d/                       1170   0.0
CHF840 (CHF840Q) /CSM/CH/CHF8-B/CHF840Q.Seq.d/                       1164   0.0
AHH340 (AHH340Q) /CSM/AH/AHH3-B/AHH340Q.Seq.d/                       1164   0.0
VHO737 (VHO737Q) /CSM/VH/VHO7-B/VHO737Q.Seq.d/                       1162   0.0
CHO312 (CHO312Q) /CSM/CH/CHO3-A/CHO312Q.Seq.d/                       1158   0.0
CHG160 (CHG160Q) /CSM/CH/CHG1-C/CHG160Q.Seq.d/                       1158   0.0
CHR417 (CHR417Q) /CSM/CH/CHR4-A/CHR417Q.Seq.d/                       1156   0.0
SHK438 (SHK438Q) /CSM/SH/SHK4-B/SHK438Q.Seq.d/                       1154   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF238311|AF238311.1 Dictyostelium discoideum AMP deaminase (amdA) gene, complete cds.  1176   0.0    1
BM897593|BM897593.1 ph35h05.y1 Ostertagia ostertagi L4 pAMP1 v1 Ostertagia ostertagi cDNA 5' similar to TR:Q18463 Q18463 SIMILAR TO AMP DEAMINASE. NCBI GI: 1166628. [1] ;, mRNA sequence.    56   0.001  1
BX000486|BX000486.13 Zebrafish DNA sequence from clone DKEY-149M16 in linkage group 10.    42   0.005  6
AP006137|AP006137.1 Lotus japonicus genomic DNA, chromosome 5, clone:LjT37K17, TM0239.    42   0.12   4
AX345695|AX345695.1 Sequence 766 from Patent WO0200928.            38   0.21   4
CN805198|CN805198.1 ILLUMIGEN_MCQ_36155 Katze_MMBR Macaca mulatta cDNA clone IBIUW:11192 5' similar to Bases 5 to 721 highly similar to human ZMYND11 (Hs.145894), mRNA sequence.    48   0.33   1
CF880307|CF880307.1 tric081xh12.b2 T.reesei mycelial culture, Version 6 October 2003 Hypocrea jecorina cDNA clone tric081xh12, mRNA sequence.    48   0.33   1
AC022433|AC022433.5 Homo sapiens chromosome 5 clone CTD-3066J14, complete sequence.    48   0.33   1
AP007433|AP007433.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 4, clone:LjT41D18, TM0560.    42   0.38   3
AC092448|AC092448.6 Homo sapiens BAC clone RP11-776E7 from 7, complete sequence.    42   0.39   4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54DD0) RecName: Full=AMP deaminase;          EC=3.5.4.6;            355   1e-96
AL355310_6(AL355310|pid:none) Human DNA sequence from clone RP5-...   165   2e-39
A44313(A44313;S59997) AMP deaminase (EC 3.5.4.6) isoform L - hum...   165   2e-39
BC166402_1(BC166402|pid:none) Rattus norvegicus adenosine monoph...   165   2e-39
AL671854_2(AL671854|pid:none) Mouse DNA sequence from clone RP23...   165   2e-39
U16270_1(U16270|pid:none) Human AMP deaminase isoform L (AMPD2) ...   165   2e-39
(Q9UDX8) RecName: Full=AMP deaminase 2;          EC=3.5.4.6; Alt...   165   2e-39
(Q9DBT5) RecName: Full=AMP deaminase 2;          EC=3.5.4.6; Alt...   165   2e-39
AK296394_1(AK296394|pid:none) Homo sapiens cDNA FLJ55345 complet...   165   2e-39
U46753_6(U46753|pid:none) Caenorhabditis elegans cosmid C34F11, ...   159   2e-37

 psg: 0.77  gvh: 0.41  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for CHS490 is cyt

>CHS490F.Seq
ATAATAATACAACAACAACAACAACATAATGTCAACACCTTTAAGAGGATCATCTCCTCA
AGTTTCATTTTATGAATCTGAACTTGATCAAGAAGGAGGCAGTGATGCCTCACACTTTAC
TTATAGAAATTATATGGAAGATGATAAAATTAATNNNNNNNNNN

>CHS490Z.Seq
NNNNNNNNNNTNGTAATCCTNTCCCAGCTTTCTTTGCTNGTGGTTTAAATGTTTCAATCT
CTACCGATGATCCACTTCAATTCCATTACACTAAAGAACCTTTAATGGAGGAATACAGTA
TTGCAACTCAAGTTTGGAGATTATCAGTTTGCGATATTTGTGAAATCGCTAGAAACTCAG
TACTTCAAAGTGGTTTCGAACATAATGTAAAATCTCATTGGTTAGGTCCAGACTATGCAA
ACTCTGGTGGTAATGATATCAAAAAGACAAACATTAGTGATATTCGTGTTTGCTTTAGAA
ATGAAACCCTCATTGAGGAATTACATTTAATCTTAAAATCACTTCAAACTTTACCAAACT
TTAAAAATTTAAATATTAATTTCTTATTGGATAAATTACCATCAGAAATTACAACTGGCA
ATGATTATAAATTGAAAAAAGCTCAACTAAAATTAAATGGTGNTAATAAATTAAGAAATT
CTTCAGTTGGTTCAACTCCTAATAATGGTACTCCTTCTAGTTNTGGTACTCCATCATTAA
GTAGTCNTGGTGCTATTGTTCATTTAATGAAAACTAAACCTTATATTCCACCACCTTTAT
CTTTAAATATTAAACAAGAAAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATACTAATACTAATACAAATAGTAATAGTACTACTACTAATCAAG
ANANATTCAAAATCNNATAAATAAAAATAAAAAAAAA

>CHS490P.Seq
ATAATAATACAACAACAACAACAACATAATGTCAACACCTTTAAGAGGATCATCTCCTCA
AGTTTCATTTTATGAATCTGAACTTGATCAAGAAGGAGGCAGTGATGCCTCACACTTTAC
TTATAGAAATTATATGGAAGATGATAAAATTAAT----------TNGTAATCCTNTCCCA
GCTTTCTTTGCTNGTGGTTTAAATGTTTCAATCTCTACCGATGATCCACTTCAATTCCAT
TACACTAAAGAACCTTTAATGGAGGAATACAGTATTGCAACTCAAGTTTGGAGATTATCA
GTTTGCGATATTTGTGAAATCGCTAGAAACTCAGTACTTCAAAGTGGTTTCGAACATAAT
GTAAAATCTCATTGGTTAGGTCCAGACTATGCAAACTCTGGTGGTAATGATATCAAAAAG
ACAAACATTAGTGATATTCGTGTTTGCTTTAGAAATGAAACCCTCATTGAGGAATTACAT
TTAATCTTAAAATCACTTCAAACTTTACCAAACTTTAAAAATTTAAATATTAATTTCTTA
TTGGATAAATTACCATCAGAAATTACAACTGGCAATGATTATAAATTGAAAAAAGCTCAA
CTAAAATTAAATGGTGNTAATAAATTAAGAAATTCTTCAGTTGGTTCAACTCCTAATAAT
GGTACTCCTTCTAGTTNTGGTACTCCATCATTAAGTAGTCNTGGTGCTATTGTTCATTTA
ATGAAAACTAAACCTTATATTCCACCACCTTTATCTTTAAATATTAAACAAGAAAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATACTAATACT
AATACAAATAGTAATAGTACTACTACTAATCAAGANANATTCAAAATCNNATAAATAAAA
ATAAAAAAAAA