CHS488
Library CH
(Link to library)
Clone ID CHS488
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHS488 (CHS488Q) /CSM/CH/CHS4-D/CHS488Q.Seq.d/
XXXXXXXXXXGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTT
GAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGT
ATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTA
GATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTA
CTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAAT
GAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAA
ATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAA
AAAATTCAACAAGAGAACGATGCTGTNTACTTGAGTGATGTTGAAAAAGCTCAACTTGAA
TTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAA
GAGAANCAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATA
sequence update 2002. 9.10
Translated Amino Acid sequence
---SPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLD
ENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQI
VEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQE
XQQSPDQIKNQLKN


Translated Amino Acid sequence (All Frames)
Frame A:
---ftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr
*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttn
r*tt*syqrisktrstketknstrerccxle*c*ksst*igc*ig*k**tresr*efssr
extis*pn*ksikk


Frame B:
---SPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLD
ENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQI
VEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQE
XQQSPDQIKNQLKN


Frame C:
---hll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*m
kmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnks
lnnlklsknfkdkinkrnkkfnkrtmlxt*vmlkklnlnwmlnwlkiinkrikmri*fkr
xnnlltklkin*ki


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP272 (VHP272Q) /CSM/VH/VHP2-C/VHP272Q.Seq.d/ 585 e-166
SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/ 585 e-166
SHL890 (SHL890Q) /CSM/SH/SHL8-D/SHL890Q.Seq.d/ 585 e-166
SHL879 (SHL879Q) /CSM/SH/SHL8-D/SHL879Q.Seq.d/ 585 e-166
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/ 585 e-166
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/ 585 e-166
SHL865 (SHL865Q) /CSM/SH/SHL8-C/SHL865Q.Seq.d/ 585 e-166
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/ 585 e-166
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/ 585 e-166
SHL817 (SHL817Q) /CSM/SH/SHL8-A/SHL817Q.Seq.d/ 585 e-166

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 585 0.0 2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 3e-25 1
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence. 36 0.050 6
CB855513|CB855513.1 ri40a10.y1 Meloidogyne chitwoodi J2 pDNR LIB Meloidogyne chitwoodi cDNA 5', mRNA sequence. 32 0.21 3
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence. 48 0.21 1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence. 48 0.21 1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence. 48 0.21 1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence. 48 0.21 1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence. 48 0.21 1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence. 48 0.21 1
dna update 2005.12. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 233 4e-60
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c... 35 1.1
AE016796_1436(AE016796|pid:none) Vibrio vulnificus CMCP6 chromos... 33 7.3
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp... 33 7.3
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143; 32 9.5

protein update 2009. 1. 4
PSORT

psg: 0.81 gvh: 0.16 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for CHS488 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHS488Z
3' end seq.
>CHS488Z.Seq
NNNNNNNNNNGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTT
GAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGT
ATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTA
GATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTA
CTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAAT
GAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAA
ATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAA
AAAATTCAACAAGAGAACGATGCTGTNTACTTGAGTGATGTTGAAAAAGCTCAACTTGAA
TTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAA
GAGAANCAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATA
Length of 3' end seq. 586
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -