CHS482
Library CH
(Link to library)
Clone ID CHS482
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13887-1
Original site URL
Representative seq. ID CHS482P
(Link to Original site)
Representative DNA sequence
>CHS482 (CHS482Q) /CSM/CH/CHS4-D/CHS482Q.Seq.d/
AGATAAATAAACAAAAAATGTCATTTGTAGTAGGTTTTGATTTCGGAACAAAGAATTGCA
CTATTGCAGTTGCCCAAAAGGGTGGTGTAGATGTTATTGCCAACGAAGTTTCAAATCGTT
TAACTCCATCAATGGTTTCATTTGGTGAAAAAGAGAGATACTTAGGTGAATCTGCTTTAA
CTAATCAATTAAGAAATATTAGAAATACAATTACAAATATTAAAAGATTTATTGGACAAG
AATTTAAAACAGATACAGTTCAAGAAGAATTAAAACATGAAATGTTTCAATCATACGAAA
TGGATAATGGATTTGTTGGATATAATGTAACATATGCAGGTGAACAATGTTCATTCTCAA
GTGAAGCAATTTTGGGTATGTTATTTGGTAAATTAAAAAAGACCACAGAAGCATTTGTAA
ACAATCCAGTTCGTGATGTGGTAATCTCAGTACCAGTATTTTGGAATGATTATCAACGTC
GTGCCATTTTAAATGCAGGTTCCATCGCAGGTTTAAATATCATTCGTTTAATCAATGAAA
CCACAGCAACAGCACTTTCATATGGTATCTACAAAGAATGGTCAGAAACTGACCCAACCA
ACGTTTTATTCGTTGATGTTGGTGATTCAGCCACTTCTGTCTCTGCCGTTCAATACAAAA
AAGGTCXXXXXXXXXXTCAAGAAAAGGTTTAACCAATGAACTCTTAAAGGCTGCCATCGA
AGAGGAAGGTCGTATGCAAGCTTCCGATCTTTTAGCCATTGAAACCGCCGAAAAGAAGAA
CGCCCTCGAAAGTTACATCTATGATATGCGTTCAAAATTACAATCATCCCTCAAAGAATA
CGTCACCCCAGCCGATGCTGAAACCTTTATGACTCAATTAAACAAACAAATGGATTGGTT
AGAAAGTGAAGAAGGTGAAGATCAAACTAAATCTGTTTACGCTGGTAAACTCGAAGAACT
CCGTCGTCTTGGTAATCCAATTCAAAAACGTAAACAAGACTTGGAAGATTATCCAGATGC
TGTCCAAACCCTTAAAAACATTGCTTCATACGTTAAAAACGAAGCTATGATTCCAGGTGA
AAGATATGACCACATTGAAAAGGAAGAAAAAGAAAAACTTTGCAAAGATTGTGATGATGC
CGTCGAATGGATTGATGCTTTAGTTGCCAAACAACAAGCAACTCCAAAGACTCAACCATG
TATTATCAATACCACTGAAGTACTCGCCAAAAAGACTCAATTAGAAGTTACCGCTAAAAT
GATCCTTGGTAAACCAAAACCAAAGCCAGTTGAAGTACCAAAGGAAGAACCAAAAGATAC
TCCAAGGAATCAAAAGACGCACCAGCTGAAGAACCAGTTGCAACTAAAGNATCAAAAG
sequence update 2002.10.25
Translated Amino Acid sequence
INKQKMSFVVGFDFGTKNCTIAVAQKGGVDVIANEVSNRLTPSMVSFGEKERYLGESALT
NQLRNIRNTITNIKRFIGQEFKTDTVQEELKHEMFQSYEMDNGFVGYNVTYAGEQCSFSS
EAILGMLFGKLKKTTEAFVNNPVRDVVISVPVFWNDYQRRAILNAGSIAGLNIIRLINET
TATALSYGIYKEWSETDPTNVLFVDVGDSATSVSAVQYKKG---

---SRKGLTNELLKAAIEEEGRMQASDLLAIETAEKKNALESYIYDMRSKLQSSLKEYVT
PADAETFMTQLNKQMDWLESEEGEDQTKSVYAGKLEELRRLGNPIQKRKQDLEDYPDAVQ
TLKNIASYVKNEAMIPGERYDHIEKEEKEKLCKDCDDAVEWIDALVAKQQATPKTQPCII
NTTEVLAKKTQLEVTAKMILGKPKPKPVEVPKEEPKDTPRNQKTHQLKNQLQLKXQK


Translated Amino Acid sequence (All Frames)
Frame A:
r*inkkchl**vliseqriallqlpkrvv*mllptkfqiv*lhqwfhlvkkrdt*vnll*
lin*eileiqlqilkdlldknlkqiqfkkn*nmkcfnhtkwimdlldim*hmqvnnvhsq
vkqfwvcylvn*krpqkhl*tiqfvmw*sqyqyfgmiinvvpf*mqvpsqv*isfv*smk
pqqqhfhmvstkngqkltqptfyslmlviqpllslpfntkkv---

---SRKGLTNELLKAAIEEEGRMQASDLLAIETAEKKNALESYIYDMRSKLQSSLKEYVT
PADAETFMTQLNKQMDWLESEEGEDQTKSVYAGKLEELRRLGNPIQKRKQDLEDYPDAVQ
TLKNIASYVKNEAMIPGERYDHIEKEEKEKLCKDCDDAVEWIDALVAKQQATPKTQPCII
NTTEVLAKKTQLEVTAKMILGKPKPKPVEVPKEEPKDTPRNQKTHQLKNQLQLKXQK

Frame B:
dk*tknvicsrf*frnkelhycscpkgwcrcycqrsfksfnsingfiw*kreilr*icfn
*sikky*kynyky*kiywtri*nryssrrikt*nvsiirng*wicwi*cnicr*tmfilk
*snfgyviw*ikkdhrsickqsss*cgnlstsile*lstschfkcrfhrrfkyhsfnq*n
hsnstfiwylqrmvrn*pnqrfir*cw*fshfclcrsiqkr---

---qekv*pmns*rlpskrkvvcklpif*plkppkrrtpskvtsmicvqnynhpskntsp
qpmlkpl*ln*tnkwig*kvkkvkiklnlftlvnsknsvvlviqfknvnktwkiiqmlsk
plktllhtlktkl*fqvkdmttlkrkkkknfakivmmpsnglml*lpnnkqlqrlnhvls
iplkyspkrln*klplk*slvnqnqsqlkyqrknqkilqgikrrts*rtscn*xik

Frame C:
INKQKMSFVVGFDFGTKNCTIAVAQKGGVDVIANEVSNRLTPSMVSFGEKERYLGESALT
NQLRNIRNTITNIKRFIGQEFKTDTVQEELKHEMFQSYEMDNGFVGYNVTYAGEQCSFSS
EAILGMLFGKLKKTTEAFVNNPVRDVVISVPVFWNDYQRRAILNAGSIAGLNIIRLINET
TATALSYGIYKEWSETDPTNVLFVDVGDSATSVSAVQYKKG---

---kkrfnq*tlkgchrrgrsyasfrsfsh*nrrkeerprklhl*yafkitiipqrirhp
src*nlydsikqtnglvrk*rr*rsn*iclrw*trrtpssw*snskt*trlgrlsrccpn
p*khcfir*krsydsr*ki*ph*kgrkrktlqrl**crrmd*cfscqttsnskdstmyyq
yh*strqkdsirsyr*ndpw*tktkas*stkgrtkryskeskdapaeepvatkxsk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHS482 (CHS482Q) /CSM/CH/CHS4-D/CHS482Q.Seq.d/ 2113 0.0
VHI779 (VHI779Q) /CSM/VH/VHI7-D/VHI779Q.Seq.d/ 1312 0.0
SLA563 (SLA563Q) /CSM/SL/SLA5-C/SLA563Q.Seq.d/ 1312 0.0
VHL621 (VHL621Q) /CSM/VH/VHL6-A/VHL621Q.Seq.d/ 1306 0.0
VHP521 (VHP521Q) /CSM/VH/VHP5-A/VHP521Q.Seq.d/ 1304 0.0
AHQ273 (AHQ273Q) /CSM/AH/AHQ2-D/AHQ273Q.Seq.d/ 1287 0.0
VHG630 (VHG630Q) /CSM/VH/VHG6-B/VHG630Q.Seq.d/ 1279 0.0
VHG245 (VHG245Q) /CSM/VH/VHG2-B/VHG245Q.Seq.d/ 1279 0.0
AHL809 (AHL809Q) /CSM/AH/AHL8-A/AHL809Q.Seq.d/ 1279 0.0
CHQ816 (CHQ816Q) /CSM/CH/CHQ8-A/CHQ816Q.Seq.d/ 1273 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY392430|AY392430.1 Dictyostelium discoideum heat shock protein 88 gene, complete cds. 954 0.0 2
CW140261|CW140261.1 104_530_11135689_148_34918_003 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 11135689, genomic survey sequence. 44 0.011 2
CZ126099|CZ126099.1 OA_BBa0015I16.f OA_BBa Oryza alta genomic clone OA_BBa0015I16 5', genomic survey sequence. 42 0.16 2
DU556649|DU556649.1 OO__Ba0037A03.f OO__Ba Oryza officinalis genomic clone OO__Ba0037A03 5', genomic survey sequence. 42 0.17 2
AC124486|AC124486.4 Mus musculus chromosome 12 clone RP23-451E1, complete sequence. 40 0.19 4
AG442312|AG442312.1 Mus musculus molossinus DNA, clone:MSMg01-324A24.T7, genomic survey sequence. 48 0.50 1
AF169823|AF169823.1 Spodoptera exigua nucleopolyhedrovirus complete genome. 40 0.96 4
AP004669|AP004669.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0491F11. 36 1.0 2
AP003297|AP003297.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A10. 36 1.0 2
AP005895|AP005895.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0018L13. 36 1.0 2
dna update 2005.12. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CU638743_280(CU638743|pid:none) Podospora anserina genomic DNA c... 192 3e-47
(Q5R606) RecName: Full=Heat shock protein 105 kDa; AltName: Full... 191 5e-47
D86956_1(D86956|pid:none) Homo sapiens mRNA for KIAA0201 gene, p... 191 5e-47
AF039695_1(AF039695|pid:none) Homo sapiens antigen NY-CO-25 (NY-... 191 5e-47
(Q61316) RecName: Full=Heat shock 70 kDa protein 4; AltName: Ful... 190 9e-47
AC009322_1(AC009322|pid:none) Arabidopsis thaliana chromosome I ... 190 1e-46
(Q0IIM3) RecName: Full=Heat shock protein 105 kDa; AltName: Full... 189 1e-46
AB023420_1(AB023420|pid:none) Homo sapiens mRNA for heat shock p... 189 2e-46
X67643_1(X67643|pid:none) H.sapiens HS24/p52 mRNA. 189 2e-46
(O88600) RecName: Full=Heat shock 70 kDa protein 4; AltName: Ful... 189 2e-46
protein update 2009. 4.13
PSORT

psg: 0.84 gvh: 0.36 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.12 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for CHS482 is cyt

5' end seq. ID CHS482F
5' end seq.
>CHS482F.Seq
AGATAAATAAACAAAAAATGTCATTTGTAGTAGGTTTTGATTTCGGAACAAAGAATTGCA
CTATTGCAGTTGCCCAAAAGGGTGGTGTAGATGTTATTGCCAACGAAGTTTCAAATCGTT
TAACTCCATCAATGGTTTCATTTGGTGAAAAAGAGAGATACTTAGGTGAATCTGCTTTAA
CTAATCAATTAAGAAATATTAGAAATACAATTACAAATATTAAAAGATTTATTGGACAAG
AATTTAAAACAGATACAGTTCAAGAAGAATTAAAACATGAAATGTTTCAATCATACGAAA
TGGATAATGGATTTGTTGGATATAATGTAACATATGCAGGTGAACAATGTTCATTCTCAA
GTGAAGCAATTTTGGGTATGTTATTTGGTAAATTAAAAAAGACCACAGAAGCATTTGTAA
ACAATCCAGTTCGTGATGTGGTAATCTCAGTACCAGTATTTTGGAATGATTATCAACGTC
GTGCCATTTTAAATGCAGGTTCCATCGCAGGTTTAAATATCATTCGTTTAATCAATGAAA
CCACAGCAACAGCACTTTCATATGGTATCTACAAAGAATGGTCAGAAACTGACCCAACCA
ACGTTTTATTCGTTGATGTTGGTGATTCAGCCACTTCTGTCTCTGCCGTTCAATACAAAA
AAGGTCNNNNNNNNNN
Length of 5' end seq. 676
3' end seq. ID CHS482Z
3' end seq.
>CHS482Z.Seq
NNNNNNNNNNTCAAGAAAAGGTTTAACCAATGAACTCTTAAAGGCTGCCATCGAAGAGGA
AGGTCGTATGCAAGCTTCCGATCTTTTAGCCATTGAAACCGCCGAAAAGAAGAACGCCCT
CGAAAGTTACATCTATGATATGCGTTCAAAATTACAATCATCCCTCAAAGAATACGTCAC
CCCAGCCGATGCTGAAACCTTTATGACTCAATTAAACAAACAAATGGATTGGTTAGAAAG
TGAAGAAGGTGAAGATCAAACTAAATCTGTTTACGCTGGTAAACTCGAAGAACTCCGTCG
TCTTGGTAATCCAATTCAAAAACGTAAACAAGACTTGGAAGATTATCCAGATGCTGTCCA
AACCCTTAAAAACATTGCTTCATACGTTAAAAACGAAGCTATGATTCCAGGTGAAAGATA
TGACCACATTGAAAAGGAAGAAAAAGAAAAACTTTGCAAAGATTGTGATGATGCCGTCGA
ATGGATTGATGCTTTAGTTGCCAAACAACAAGCAACTCCAAAGACTCAACCATGTATTAT
CAATACCACTGAAGTACTCGCCAAAAAGACTCAATTAGAAGTTACCGCTAAAATGATCCT
TGGTAAACCAAAACCAAAGCCAGTTGAAGTACCAAAGGAAGAACCAAAAGATACTCCAAG
GAATCAAAAGACGCACCAGCTGAAGAACCAGTTGCAACTAAAGNATCAAAAG
Length of 3' end seq. 712
Connected seq. ID CHS482P
Connected seq.
>CHS482P.Seq
AGATAAATAAACAAAAAATGTCATTTGTAGTAGGTTTTGATTTCGGAACAAAGAATTGCA
CTATTGCAGTTGCCCAAAAGGGTGGTGTAGATGTTATTGCCAACGAAGTTTCAAATCGTT
TAACTCCATCAATGGTTTCATTTGGTGAAAAAGAGAGATACTTAGGTGAATCTGCTTTAA
CTAATCAATTAAGAAATATTAGAAATACAATTACAAATATTAAAAGATTTATTGGACAAG
AATTTAAAACAGATACAGTTCAAGAAGAATTAAAACATGAAATGTTTCAATCATACGAAA
TGGATAATGGATTTGTTGGATATAATGTAACATATGCAGGTGAACAATGTTCATTCTCAA
GTGAAGCAATTTTGGGTATGTTATTTGGTAAATTAAAAAAGACCACAGAAGCATTTGTAA
ACAATCCAGTTCGTGATGTGGTAATCTCAGTACCAGTATTTTGGAATGATTATCAACGTC
GTGCCATTTTAAATGCAGGTTCCATCGCAGGTTTAAATATCATTCGTTTAATCAATGAAA
CCACAGCAACAGCACTTTCATATGGTATCTACAAAGAATGGTCAGAAACTGACCCAACCA
ACGTTTTATTCGTTGATGTTGGTGATTCAGCCACTTCTGTCTCTGCCGTTCAATACAAAA
AAGGTC----------TCAAGAAAAGGTTTAACCAATGAACTCTTAAAGGCTGCCATCGA
AGAGGAAGGTCGTATGCAAGCTTCCGATCTTTTAGCCATTGAAACCGCCGAAAAGAAGAA
CGCCCTCGAAAGTTACATCTATGATATGCGTTCAAAATTACAATCATCCCTCAAAGAATA
CGTCACCCCAGCCGATGCTGAAACCTTTATGACTCAATTAAACAAACAAATGGATTGGTT
AGAAAGTGAAGAAGGTGAAGATCAAACTAAATCTGTTTACGCTGGTAAACTCGAAGAACT
CCGTCGTCTTGGTAATCCAATTCAAAAACGTAAACAAGACTTGGAAGATTATCCAGATGC
TGTCCAAACCCTTAAAAACATTGCTTCATACGTTAAAAACGAAGCTATGATTCCAGGTGA
AAGATATGACCACATTGAAAAGGAAGAAAAAGAAAAACTTTGCAAAGATTGTGATGATGC
CGTCGAATGGATTGATGCTTTAGTTGCCAAACAACAAGCAACTCCAAAGACTCAACCATG
TATTATCAATACCACTGAAGTACTCGCCAAAAAGACTCAATTAGAAGTTACCGCTAAAAT
GATCCTTGGTAAACCAAAACCAAAGCCAGTTGAAGTACCAAAGGAAGAACCAAAAGATAC
TCCAAGGAATCAAAAGACGCACCAGCTGAAGAACCAGTTGCAACTAAAGNATCAAAAG
Length of connected seq. 1368
Full length Seq ID -
Full length Seq. -
Length of full length seq. -