CHS480
Library CH
(Link to library)
Clone ID CHS480
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHS480 (CHS480Q) /CSM/CH/CHS4-D/CHS480Q.Seq.d/
XXXXXXXXXXTACCAATGCTTTTGGTGCANCTAAAGGTGGTCGTGATATTATTGTTNCAA
CTGGTTTCGATTACTANGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTG
GTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTC
CAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTNTCTTC
CACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTG
GTGAACNTGGTATTTCAGGAATCACAGTANTCTTAATNCTATGGTCAACAATCAACTCCA
ACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCNAATTNGAAGTTGATTTCAGTTCA
AATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGA
AANGCGGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAAT
GTTTATGTCACTTCTTT
sequence update 2002. 9.10
Translated Amino Acid sequence
---TNAFGAXKGGRDIIVXTGFDYXEAFEGSIRWYNATSGKQLKGYSLYITSSNGRTPSP
TFGKQNGLGDITSVYDSXLPQYRVGRVWLDINGNGIQDAGEXGISGITVXLXLWSTINSN
KSNCIRFKWLFXIXS*fqfklllcnsccilpswffhynekxgsnsskyk**cflinc**c
lchff


Translated Amino Acid sequence (All Frames)
Frame A:
---TNAFGAXKGGRDIIVXTGFDYXEAFEGSIRWYNATSGKQLKGYSLYITSSNGRTPSP
TFGKQNGLGDITSVYDSXLPQYRVGRVWLDINGNGIQDAGEXGISGITVXLXLWSTINSN
KSNCIRFKWLFXIXS*fqfklllcnsccilpswffhynekxgsnsskyk**cflinc**c
lchff


Frame B:
---pmllvxlkvvvillxqlvsitxkhlkvqfvgimqplvnn*kvtlyi*plqmvvphlq
plvnkmvlvillqcmilxfhnivlvefgli*mvmvfkmlvnxvfqesqxs*xygqqstpt
sqtvsdsngyfxxevdfssnyycvipvaffqagssitmrxadpthpntnsdaflstvdnv
yvts


Frame C:
---qcfwcx*rws*yycxnwfrllxsi*rfnslv*cnlw*ttkrllfiynlfkwsypisn
lw*tkwsw*yyfsv*fxsstiscw*sla*ykw*wysrcw*twyfrnhsxlnxmvnnqlqq
vklypiqmvisnxklisvqiiiv*fllhssklvlplq*exriqliqiqivmlsyqllimf
msll


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHS480 (CHS480Q) /CSM/CH/CHS4-D/CHS480Q.Seq.d/ 1025 0.0
SHB317 (SHB317Q) /CSM/SH/SHB3-A/SHB317Q.Seq.d/ 1009 0.0
SHB135 (SHB135Q) /CSM/SH/SHB1-B/SHB135Q.Seq.d/ 1009 0.0
SHJ874 (SHJ874Q) /CSM/SH/SHJ8-D/SHJ874Q.Seq.d/ 1007 0.0
SSG727 (SSG727Q) /CSM/SS/SSG7-B/SSG727Q.Seq.d/ 1007 0.0
SSF392 (SSF392Q) /CSM/SS/SSF3-D/SSF392Q.Seq.d/ 1007 0.0
SLH868 (SLH868Q) /CSM/SL/SLH8-C/SLH868Q.Seq.d/ 1007 0.0
SHL883 (SHL883Q) /CSM/SH/SHL8-D/SHL883Q.Seq.d/ 1007 0.0
SHL880 (SHL880Q) /CSM/SH/SHL8-D/SHL880Q.Seq.d/ 1007 0.0
SHL873 (SHL873Q) /CSM/SH/SHL8-D/SHL873Q.Seq.d/ 1007 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CV912682|CV912682.1 PF007G3 sporangia, cleaving Phytophthora infestans cDNA, mRNAsequence. 46 0.78 1
AC099203|AC099203.4 Rattus norvegicus clone CH230-126K21, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces. 46 0.78 1
AC099201|AC099201.6 Rattus norvegicus clone CH230-123L16, WORKING DRAFT SEQUENCE, 7 unordered pieces. 46 0.78 1
AC117644|AC117644.6 Mus musculus chromosome 7, clone RP23-238L7, complete sequence. 44 3.1 1
AC108762|AC108762.2 Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0052C07, complete sequence. 32 5.6 2
AC108758|AC108758.2 Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0066E19, complete sequence. 32 5.6 2
AC138008|AC138008.1 Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0029L15, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces. 32 5.6 2

dna update 2005.12. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 57 2e-07
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei... 49 1e-04
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD... 49 1e-04
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD... 49 1e-04
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD... 49 1e-04
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD... 49 1e-04
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur... 49 1e-04
(Q8NXX6) RecName: Full=Serine-aspartate repeat-containing protei... 49 1e-04
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 46 1e-04
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 48 1e-04
protein update 2009. 5.21
PSORT

psg: 0.81 gvh: 0.45 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CHS480 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHS480Z
3' end seq.
>CHS480Z.Seq
NNNNNNNNNNTACCAATGCTTTTGGTGCANCTAAAGGTGGTCGTGATATTATTGTTNCAA
CTGGTTTCGATTACTANGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTG
GTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTC
CAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTNTCTTC
CACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTG
GTGAACNTGGTATTTCAGGAATCACAGTANTCTTAATNCTATGGTCAACAATCAACTCCA
ACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCNAATTNGAAGTTGATTTCAGTTCA
AATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGA
AANGCGGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAAT
GTTTATGTCACTTCTTT
Length of 3' end seq. 557
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -