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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS479
Library CH
(Link to library)
Clone ID CHS479
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15935-1
Original site URL
Representative seq. ID CHS479P
(Link to Original site)
Representative DNA sequence 
>CHS479 (CHS479Q) /CSM/CH/CHS4-D/CHS479Q.Seq.d/
GCACACAAAAAAAAATCAAAAATCAAAAAAAACAATAAAAATAAATAAGAAAAAAACTAT
TTAAATAAGAGAAAATAACATTTAGTTTTTTCTTTATTTTTTTTTTTTATNAAGTTTTAG
GAAAAAAAAAAXXXXXXXXXXACAGATCATCAGCAAGTGGTGCAACCACTGTCTATGGTG
GTGGTACATTTGTTGAGGGTGATTTCATCAAATTCGAGAATGTTTCAATCGTATCACCAG
AGGGTAAACTTTTGGTAGAGAATTTAGATTTCCAAGTTATGCCAAATCAAAATGTAATGA
TCACTGGTCCAAATGGTTCAGGTAAGAGTTCACTCTTTAGAATCCTCGGTGAATTATGGC
CACTTCATTGTGGTACTGTAATTAAACCAAGAAAGGAAGATACCTTATTCGTTCCACAAA
AACCTTACTTGGTATTGGGTACCCTCCGTGATCAAATCATCTATCCACATAGTCATGATG
ATATGAAGAAATTGGGTGTCACCGATGATGATCTTCAACATCTTTTAGCAACCGTAGATC
CAAATCTTACTATCATTCGTCAATGGAATTGGGATGATACCAAAGATTGGTTCACTGCCC
TCTCTGGTGGTCAAAAACAAAGAATTGCCATGGCTCGTCTCTTTTATCATCGTCCACAAT
ACGCTATTCTCGATGAATGTACAAGCGCCGTCTCNTGATGAAGTCGAAGGTAAAATCTAT
GAAACTTGTAAAAAACTTGGTATCACTTTATTCACCGTTTCTCATCGTCCACAATTAAGA
GCTTACCACGATTACGTTTTACTCTTTAATGGTAGAGGGGTTGGGAAGGTCAAAAATNAT
CATGATNAGATCATTAAAAAAACC
sequence update 2002.10.25
Translated Amino Acid sequence 
tqkkiknqkkq*k*irkklfk*EKITFSFFFIFFFYXVLGKKK---

---RSSASGATTVYGGGTFVEGDFIKFENVSIVSPEGKLLVENLDFQVMPNQNVMITGPN
GSGKSSLFRILGELWPLHCGTVIKPRKEDTLFVPQKPYLVLGTLRDQIIYPHSHDDMKKL
GVTDDDLQHLLATVDPNLTIIRQWNWDDTKDWFTALSGGQKQRIAMARLFYHRPQYAILD
ECTSAVS**srr*nl*nl*ktwyhfihrfssstikslprlrftl*w*rgwegqkxs*xdh
*kn
Translated Amino Acid sequence (All Frames) 
Frame A:
ahkkkskikknnknk*eknylnkrk*hlvfslffffxkf*ekk---

---tdhqqvvqplsmvvvhllrvissnsrmfqsyhqrvnfw*ri*isklcqikm**slvq
mvqvrvhslessvnyghfivvl*lnqerkipysfhknltwywvpsvikssihivmmi*rn
wvspmmifnif*qp*iqillsfvngigmipkigslpslvvknkelpwlvsfiivhntlfs
mnvqapsxdevegkiyetckklgitlftvshrpqlrayhdyvllfngrgvgkvknxhdxi
ikkt

Frame B:
htkknqkskktikinkkkti*irenni*fflyffflxsfrkkk---

---qiiskwcnhclwwwyic*g*fhqirecfnritrg*tfgrefrfpsyakskcndhwsk
wfr*eftl*npr*imatslwycn*tkkgrylirstktllgigypp*snhlst*s**yeei
gchr**sstsfsnrrsksyyhssmelg*yqrlvhcplwwsktknchgssllssstirysr
*mykrrlxmkskvksmklvknlvslyspflivhn*elttitfyslmveglgrskximxrs
lkk

Frame C:
tqkkiknqkkq*k*irkklfk*EKITFSFFFIFFFYXVLGKKK---

---RSSASGATTVYGGGTFVEGDFIKFENVSIVSPEGKLLVENLDFQVMPNQNVMITGPN
GSGKSSLFRILGELWPLHCGTVIKPRKEDTLFVPQKPYLVLGTLRDQIIYPHSHDDMKKL
GVTDDDLQHLLATVDPNLTIIRQWNWDDTKDWFTALSGGQKQRIAMARLFYHRPQYAILD
ECTSAVS**srr*nl*nl*ktwyhfihrfssstikslprlrftl*w*rgwegqkxs*xdh
*kn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS479 (CHS479Q) /CSM/CH/CHS4-D/CHS479Q.Seq.d/                       1398   0.0
CHR257 (CHR257Q) /CSM/CH/CHR2-C/CHR257Q.Seq.d/                       1376   0.0
CHR260 (CHR260Q) /CSM/CH/CHR2-C/CHR260Q.Seq.d/                       1366   0.0
CFK157 (CFK157Q) /CSM/CF/CFK1-C/CFK157Q.Seq.d/                       1360   0.0
CHS162 (CHS162Q) /CSM/CH/CHS1-C/CHS162Q.Seq.d/                       1358   0.0
VHN686 (VHN686Q) /CSM/VH/VHN6-D/VHN686Q.Seq.d/                       1352   0.0
SFA844 (SFA844Q) /CSM/SF/SFA8-B/SFA844Q.Seq.d/                       1352   0.0
CFJ866 (CFJ866Q) /CSM/CF/CFJ8-C/CFJ866Q.Seq.d/                       1352   0.0
CHI244 (CHI244Q) /CSM/CH/CHI2-B/CHI244Q.Seq.d/                       1346   0.0
CHM189 (CHM189Q) /CSM/CH/CHM1-D/CHM189Q.Seq.d/                       1344   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY077633|AY077633.1 Dictyostelium discoideum ABC transporter ABCD.2 gene, complete cds.  1088   0.0    2
AF334035|AF334035.2 Sterkiella histriomuscorum putative ABC transporter gene, partial sequence.    56   1e-04  2
DV609990|DV609990.1 EST1212986 Glossina morsitans morsitans Fat body cDNA Glossina morsitans morsitans cDNA clone GLABP55 5' end, mRNA sequence.    44   0.004  2
BX563734|BX563734.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse68e09_p1c.    44   0.004  2
BX557866|BX557866.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse35c01_p1c.    44   0.004  2
BX553115|BX553115.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse127d08_p1c.    44   0.004  2
DR661093|DR661093.1 EST1051210 FvN Gibberella moniliformis cDNA clone FVNCY19, mRNA sequence.    52   0.020  1
DR646487|DR646487.1 EST1036604 FvN Gibberella moniliformis cDNA clone FVNA377, mRNA sequence.    52   0.020  1
DR611648|DR611648.1 EST1001776 FvG Gibberella moniliformis cDNA clone FVGEC02, mRNA sequence.    52   0.020  1
DR606347|DR606347.1 EST996475 FvG Gibberella moniliformis cDNA clone FVGBL28, mRNA sequence.    52   0.020  1
dna update 2005.12. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY077633_1(AY077633|pid:none) Dictyostelium discoideum ABC trans...   380   e-124
AE014298_3062(AE014298|pid:none) Drosophila melanogaster chromos...   203   2e-62
T15802(T15802) hypothetical protein C44B7.9 - Caenorhabditis ele...   204   4e-60
AE017343_388(AE017343|pid:none) Cryptococcus neoformans var. neo...   210   6e-60
AK144060_1(AK144060|pid:none) Mus musculus adult male kidney cDN...   204   6e-60
T15801(T15801) hypothetical protein C44B7.8 - Caenorhabditis ele...   202   7e-60
BC070657_1(BC070657|pid:none) Xenopus laevis hypothetical protei...   200   1e-59
BC009119_1(BC009119|pid:none) Mus musculus ATP-binding cassette,...   201   3e-59
AJ851381_1(AJ851381|pid:none) Gallus gallus mRNA for hypothetica...   199   3e-59
AK004660_1(AK004660|pid:none) Mus musculus adult male lung cDNA,...   201   4e-59
protein update 2009. 4.13
PSORT 

 psg: 1.02  gvh: 0.63  alm: 0.34  top: 0.73  tms: 0.00  mit: 0.26  mip: 0.05
 nuc: 0.07  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for CHS479 is nuc
5' end seq. ID CHS479F
5' end seq. 
>CHS479F.Seq
GCACACAAAAAAAAATCAAAAATCAAAAAAAACAATAAAAATAAATAAGAAAAAAACTAT
TTAAATAAGAGAAAATAACATTTAGTTTTTTCTTTATTTTTTTTTTTTATNAAGTTTTAG
GAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 141
3' end seq. ID CHS479Z
3' end seq. 
>CHS479Z.Seq
NNNNNNNNNNACAGATCATCAGCAAGTGGTGCAACCACTGTCTATGGTGGTGGTACATTT
GTTGAGGGTGATTTCATCAAATTCGAGAATGTTTCAATCGTATCACCAGAGGGTAAACTT
TTGGTAGAGAATTTAGATTTCCAAGTTATGCCAAATCAAAATGTAATGATCACTGGTCCA
AATGGTTCAGGTAAGAGTTCACTCTTTAGAATCCTCGGTGAATTATGGCCACTTCATTGT
GGTACTGTAATTAAACCAAGAAAGGAAGATACCTTATTCGTTCCACAAAAACCTTACTTG
GTATTGGGTACCCTCCGTGATCAAATCATCTATCCACATAGTCATGATGATATGAAGAAA
TTGGGTGTCACCGATGATGATCTTCAACATCTTTTAGCAACCGTAGATCCAAATCTTACT
ATCATTCGTCAATGGAATTGGGATGATACCAAAGATTGGTTCACTGCCCTCTCTGGTGGT
CAAAAACAAAGAATTGCCATGGCTCGTCTCTTTTATCATCGTCCACAATACGCTATTCTC
GATGAATGTACAAGCGCCGTCTCNTGATGAAGTCGAAGGTAAAATCTATGAAACTTGTAA
AAAACTTGGTATCACTTTATTCACCGTTTCTCATCGTCCACAATTAAGAGCTTACCACGA
TTACGTTTTACTCTTTAATGGTAGAGGGGTTGGGAAGGTCAAAAATNATCATGATNAGAT
CATTAAAAAAACC
Length of 3' end seq. 733
Connected seq. ID CHS479P
Connected seq. 
>CHS479P.Seq
GCACACAAAAAAAAATCAAAAATCAAAAAAAACAATAAAAATAAATAAGAAAAAAACTAT
TTAAATAAGAGAAAATAACATTTAGTTTTTTCTTTATTTTTTTTTTTTATNAAGTTTTAG
GAAAAAAAAAA----------ACAGATCATCAGCAAGTGGTGCAACCACTGTCTATGGTG
GTGGTACATTTGTTGAGGGTGATTTCATCAAATTCGAGAATGTTTCAATCGTATCACCAG
AGGGTAAACTTTTGGTAGAGAATTTAGATTTCCAAGTTATGCCAAATCAAAATGTAATGA
TCACTGGTCCAAATGGTTCAGGTAAGAGTTCACTCTTTAGAATCCTCGGTGAATTATGGC
CACTTCATTGTGGTACTGTAATTAAACCAAGAAAGGAAGATACCTTATTCGTTCCACAAA
AACCTTACTTGGTATTGGGTACCCTCCGTGATCAAATCATCTATCCACATAGTCATGATG
ATATGAAGAAATTGGGTGTCACCGATGATGATCTTCAACATCTTTTAGCAACCGTAGATC
CAAATCTTACTATCATTCGTCAATGGAATTGGGATGATACCAAAGATTGGTTCACTGCCC
TCTCTGGTGGTCAAAAACAAAGAATTGCCATGGCTCGTCTCTTTTATCATCGTCCACAAT
ACGCTATTCTCGATGAATGTACAAGCGCCGTCTCNTGATGAAGTCGAAGGTAAAATCTAT
GAAACTTGTAAAAAACTTGGTATCACTTTATTCACCGTTTCTCATCGTCCACAATTAAGA
GCTTACCACGATTACGTTTTACTCTTTAATGGTAGAGGGGTTGGGAAGGTCAAAAATNAT
CATGATNAGATCATTAAAAAAACC
Length of connected seq. 854
Full length Seq ID -
Full length Seq. -
Length of full length seq. -