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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS472
Library CH
(Link to library)
Clone ID CHS472
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16313-1
Original site URL
Representative seq. ID CHS472P
(Link to Original site)
Representative DNA sequence 
>CHS472 (CHS472Q) /CSM/CH/CHS4-C/CHS472Q.Seq.d/
GTAGAATCTCATATAAGAATTGAAACATCTTTGGCATTCAAGTGTCCTCGATATGATGAA
TGTGGTGTCTGTGAAGGTGATGGTACTTCTTGTTGTACTCCAAATAATTGTGATAATAAT
CCAATTTATAGAACCAACTGTATAACAGCAAAATGTTCAAATAATGTTTGCTTTACTTCA
GCACCATATTGCAGTTCAACCGAACCATGTACAGTTGGTCTTTGTACACCAGGTGTTGGT
TGTTCAGTTGTTCCAAAAAATTGTGTAAATGAAAATCATTGTACCCAAGATTCATGTAAT
TCAACTATAAATGCTTGCCAACATGATCCAATTCCAGATTGTATCAATTGTGCCTATATT
GGTTGTATCACTACTGATTATTGTAATGAACAAGTATGTTCAGCTGATGGAAGATCATGT
GAAACTAGACCAAAGAATTGNGATGATTTAAATTTTTGTACTGTTGATACATGTTCAAAT
GGAGTTTGCATTTACACAAAGAATTGATAATTGTGTAAATTGTACAGGTCCAGGTATTGG
TTGTATTACTACTGATCAATGTAATCCAAATGTATGGTTCTCCAGATGGGTAATTCATGT
ATCATTCXXXXXXXXXXTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCA
CCAGTTTCAATTGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGT
GATTGTTGTCCAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAA
CCAGCAACCACTGGTAGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGC
AGGGCTACAGGTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATAT
CATTGTAAAAGAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCA
AACTACAAATGTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGT
TTTATGGTTAAAAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGT
TGTAAATTCACACCAGTTTGCAAACCAAAAGGACACTCACTTTAAAAAAAACTAAAATTA
ATATATTATTTCTTTTCTTTTTATTATATATTTTTATTAAAATTTTATAACCAAGTCAAC
TAATTTCAATTTAATATTACAATATAAACATTAAGTTTATTGTAAAATTTAATAATAAAT
AAAAAAACAACTGCCCCATTTAAACA
sequence update 2002.10.25
Translated Amino Acid sequence 
*nli*elkhlwhssvldmmnvvsvkvmvllvvlqiiviiiqfieptv*qqnvqimfallq
hhiavqpnhvqlvfvhqvlvvqlfqkiv*mkiivpkihviql*mlanmiqfqivsivpil
vvslliivmnkyvqlmedhvkldqrixmi*IFVLLIHVQMEFAFTQRIDNCVNCTGPGIG
CITTDQCNPNVWFSRWVIHVSF---

---ICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPIGQKCLLVNGHEICIKPAT
TGSIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYK
CLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFTPVCKPKGHSL*kklkliyy
ffsfyyifllkfynqvn*fqfniti*tlsll*nliinkkttapfk
Translated Amino Acid sequence (All Frames) 
Frame A:
veshirietslafkcprydecgvcegdgtscctpnncdnnpiyrtncitakcsnnvcfts
apycsstepctvglctpgvgcsvvpkncvnenhctqdscnstinacqhdpipdcincayi
gcittdycneqvcsadgrscetrpknxddlnfctvdtcsngvciytkn**lcklyrsryw
lyyy*sm*skcmvlqmgnscii---

---ylsk*sn*rlcytitsfnwwnypsnhywcits*v*llsnwskmfisqws*nly*tsn
hw*ysrinywlcwynnwqgyrslhriryr*stfm**isl*krngmscc*wcsrmftiklq
mfrlfrssl*etr*fhlfyg*kskfhf**t*llw*iml*ihtslqtkrtltlkktkinil
flffllyifikil*psqlisi*yyninikfivkfnnk*knncpi*t

Frame B:
*nli*elkhlwhssvldmmnvvsvkvmvllvvlqiiviiiqfieptv*qqnvqimfallq
hhiavqpnhvqlvfvhqvlvvqlfqkiv*mkiivpkihviql*mlanmiqfqivsivpil
vvslliivmnkyvqlmedhvkldqrixmi*IFVLLIHVQMEFAFTQRIDNCVNCTGPGIG
CITTDQCNPNVWFSRWVIHVSF---

---ICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPIGQKCLLVNGHEICIKPAT
TGSIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYK
CLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFTPVCKPKGHSL*kklkliyy
ffsfyyifllkfynqvn*fqfniti*tlsll*nliinkkttapfk

Frame C:
risykn*nifgiqvssi**mwcl*r*wyfllysk*l***snl*nqlynskmfk*cllyfs
tilqfnrtmyswslytrcwlfscskklck*kslyprfm*fnykclpt*snsrlyqlclyw
lyhy*ll**tsmfs*wkim*n*tkelx*fkflyc*ymfkwslhlhkeliiv*ivqvqvlv
vlllinviqmygspdg*fmyh---

---fvkiiqltvvlhhhqfqlvelslqpllvyhklsvivvqlvknvy*smvmkfvlnqqp
lvvfqn*llvvlvqqlaglqvitqnqvqvihiyvidiivkeewnvmllmvfqnvyhqttn
v*iv*ifivrdkvispvlwlkiqisflvnivvmvnhvvnshqfanqkdthfkkn*n*yii
sflfiiyfy*nfitkstnfnlilqykh*vycki***ikkqlphln
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS472 (CHS472Q) /CSM/CH/CHS4-C/CHS472Q.Seq.d/                       2161   0.0
CHR682 (CHR682Q) /CSM/CH/CHR6-D/CHR682Q.Seq.d/                       1142   0.0
AHA224 (AHA224Q) /CSM/AH/AHA2-A/AHA224Q.Seq.d/                       1142   0.0
CHP164 (CHP164Q) /CSM/CH/CHP1-C/CHP164Q.Seq.d/                       1134   0.0
SHA693 (SHA693Q) /CSM/SH/SHA6-D/SHA693Q.Seq.d/                       1128   0.0
CHG401 (CHG401Q) /CSM/CH/CHG4-A/CHG401Q.Seq.d/                       1088   0.0
CHN684 (CHN684Q) /CSM/CH/CHN6-D/CHN684Q.Seq.d/                       1072   0.0
CHN234 (CHN234Q) /CSM/CH/CHN2-B/CHN234Q.Seq.d/                       1039   0.0
CHO131 (CHO131Q) /CSM/CH/CHO1-B/CHO131Q.Seq.d/                       1033   0.0
CHN494 (CHN494Q) /CSM/CH/CHN4-D/CHN494Q.Seq.d/                       1007   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CZ291153|CZ291153.1 cp74a11.f Candida parapsilosis Random Genomic Library Candida parapsilosis genomic clone cp74a11, genomic survey sequence.    48   0.46   1
AL359090|AL359090.15 Human DNA sequence from clone RP11-69P2 on chromosome 1.    42   1.8    2
AC020547|AC020547.7 Homo sapiens BAC clone RP11-134F3 from 2, complete sequence.    46   1.8    1
AC156695|AC156695.2 Bos taurus clone CH240-56A7, *** SEQUENCING IN PROGRESS ***, 62 unordered pieces.    32   3.3    2
AC148669|AC148669.1 Macaca mulatta Major Histocompatibility Complex BAC MMU063B15, complete sequence.    34   3.4    2
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.    38   3.9    8
AC090168|AC090168.3 Homo sapiens chromosome 18 clone RP11-125M20 map 18, WORKING DRAFT SEQUENCE, 31 unordered pieces.    44   5.4    4
X78948|X78948.1 D.minutum ecmB gene.                               40   5.4    2
CV752175|CV752175.1 SJL6-009_A06_SJL6-009A06-T3_039.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   7.2    1
CV752026|CV752026.1 SJL6-007_B08_SJL6-007B08-T3_063.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   7.2    1
dna update 2005.12. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                375   e-114
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                225   2e-57
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                113   2e-23
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                105   3e-21
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    85   5e-15
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...    85   5e-15
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    81   9e-14
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    74   8e-12
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 72   1e-11
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    72   3e-11
protein update 2009. 4.13
PSORT 

 psg: 0.75  gvh: 0.53  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHS472 is cyt
5' end seq. ID CHS472F
5' end seq. 
>CHS472F.Seq
GTAGAATCTCATATAAGAATTGAAACATCTTTGGCATTCAAGTGTCCTCGATATGATGAA
TGTGGTGTCTGTGAAGGTGATGGTACTTCTTGTTGTACTCCAAATAATTGTGATAATAAT
CCAATTTATAGAACCAACTGTATAACAGCAAAATGTTCAAATAATGTTTGCTTTACTTCA
GCACCATATTGCAGTTCAACCGAACCATGTACAGTTGGTCTTTGTACACCAGGTGTTGGT
TGTTCAGTTGTTCCAAAAAATTGTGTAAATGAAAATCATTGTACCCAAGATTCATGTAAT
TCAACTATAAATGCTTGCCAACATGATCCAATTCCAGATTGTATCAATTGTGCCTATATT
GGTTGTATCACTACTGATTATTGTAATGAACAAGTATGTTCAGCTGATGGAAGATCATGT
GAAACTAGACCAAAGAATTGNGATGATTTAAATTTTTGTACTGTTGATACATGTTCAAAT
GGAGTTTGCATTTACACAAAGAATTGATAATTGTGTAAATTGTACAGGTCCAGGTATTGG
TTGTATTACTACTGATCAATGTAATCCAAATGTATGGTTCTCCAGATGGGTAATTCATGT
ATCATTCNNNNNNNNNN
Length of 5' end seq. 617
3' end seq. ID CHS472Z
3' end seq. 
>CHS472Z.Seq
NNNNNNNNNNTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTT
CAATTGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTT
GTCCAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAA
CCACTGGTAGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTA
CAGGTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTA
AAAGAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACA
AATGTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGG
TTAAAAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAAT
TCACACCAGTTTGCAAACCAAAAGGACACTCACTTTAAAAAAAACTAAAATTAATATATT
ATTTCTTTTCTTTTTATTATATATTTTTATTAAAATTTTATAACCAAGTCAACTAATTTC
AATTTAATATTACAATATAAACATTAAGTTTATTGTAAAATTTAATAATAAATAAAAAAA
CAACTGCCCCATTTAAACA
Length of 3' end seq. 679
Connected seq. ID CHS472P
Connected seq. 
>CHS472P.Seq
GTAGAATCTCATATAAGAATTGAAACATCTTTGGCATTCAAGTGTCCTCGATATGATGAA
TGTGGTGTCTGTGAAGGTGATGGTACTTCTTGTTGTACTCCAAATAATTGTGATAATAAT
CCAATTTATAGAACCAACTGTATAACAGCAAAATGTTCAAATAATGTTTGCTTTACTTCA
GCACCATATTGCAGTTCAACCGAACCATGTACAGTTGGTCTTTGTACACCAGGTGTTGGT
TGTTCAGTTGTTCCAAAAAATTGTGTAAATGAAAATCATTGTACCCAAGATTCATGTAAT
TCAACTATAAATGCTTGCCAACATGATCCAATTCCAGATTGTATCAATTGTGCCTATATT
GGTTGTATCACTACTGATTATTGTAATGAACAAGTATGTTCAGCTGATGGAAGATCATGT
GAAACTAGACCAAAGAATTGNGATGATTTAAATTTTTGTACTGTTGATACATGTTCAAAT
GGAGTTTGCATTTACACAAAGAATTGATAATTGTGTAAATTGTACAGGTCCAGGTATTGG
TTGTATTACTACTGATCAATGTAATCCAAATGTATGGTTCTCCAGATGGGTAATTCATGT
ATCATTC----------TATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCA
CCAGTTTCAATTGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGT
GATTGTTGTCCAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAA
CCAGCAACCACTGGTAGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGC
AGGGCTACAGGTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATAT
CATTGTAAAAGAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCA
AACTACAAATGTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGT
TTTATGGTTAAAAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGT
TGTAAATTCACACCAGTTTGCAAACCAAAAGGACACTCACTTTAAAAAAAACTAAAATTA
ATATATTATTTCTTTTCTTTTTATTATATATTTTTATTAAAATTTTATAACCAAGTCAAC
TAATTTCAATTTAATATTACAATATAAACATTAAGTTTATTGTAAAATTTAATAATAAAT
AAAAAAACAACTGCCCCATTTAAACA
Length of connected seq. 1276
Full length Seq ID -
Full length Seq. -
Length of full length seq. -