CHS470 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHS470
Library	CH (Link to library)
Clone ID	CHS470 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16515-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHS4-C/CHS470Q.Seq.d/
Representative seq. ID	CHS470E (Link to Original site)
Representative DNA sequence	>CHS470 (CHS470Q) /CSM/CH/CHS4-C/CHS470Q.Seq.d/ ATCGTTTTTATTTTAATATTATAATTTTAACAAAATGAAAGTTTTATATATTTATATATT GTTATTGGTTTGTAAATTTTTATTTGTGAAATCAAGTTGCTCTTTAAAATATGAAAAAAT AGAATGTACAAATGAATTTGAAACATTTGAATTATATAATGGTACTGTTGTCAATGTAAA AATGGATACAGTTGGAGGGAGATATTATTTTAATCCACTAAAGTTTCCTTACAAGAATTT GCTATGCGATTTAAATATTTTAATTAAATTCACACCAGAAATCCCATCATTCCCAAATAT ACCCACAACAGGTGGAGAATTCGGGTTCACCTTCAACTTTCCTTGCACCTATAAGCGAAC AGTCAAAGAAATAGGAACAGAAAGAACTTTATTATCTCTCAGTTTTGATACAAGCAAAAA ATCAGTTCGTTACTTACTTGGATCCAGGGCGTGGTGCTTTAAATTTGTTTTTTGAAAATA TCCAGATTTTGAATTCAACTTTTGAAACTGGTGCCATACCCAATGTACCAATTCTCGATG ATGATAAAGGTATTTTAACTATTCAAGGTCGTAATCTNTACAACACTTCAATTAAAATTT ATTCAACTAACATTTTGAAAGACNCCAACCCTATTGGTGCACTANATACTTCCCATTTTT NTGTCACATTTTCCGCTGAANAATTTTTAACTCCAAATAATTGGACAATTGAAGTNTCAA TATGTGGCTCATTTTATAAAAGCTATTCCTACCCATATTTACCGGTGCTCATCAAAATGG AGGGGGCACTTAATGATAATGGTTGTAATATGGTATTTACTGGAAAGCATTTAAGACCAA AACNCAATGTTACTGGTACTTTTGGTAATAAAACTATTGAGTGTNTCACAACCAATTTTT CAAAAAGCATAACATGTACCATTCCAAGTNTTAAAAGTTATGGTTNTCTTGGTTATGATA TTCCTGTAACAATTACTATTGATGGAGAATACAAATCAAATACAATTAAAATATCATANG ATATTCCAAGGTATACTTTTAAAATAAAAAAATAAAGAAATATAATACTCTTTTTTTTTT
sequence update	2002.10.27
Translated Amino Acid sequence	rfyfniiiltkkfyifiycywfvnfylnqvalnmkknvqmnlkhlnyimvllsmk wiqlegdiilihsfltricyaiiflnshqkshhsqiypqqvensgspstflapiseq skkEQKELYYLSVLIQAKNQFVTYLDPGRGALNLFFENIQILNSTFETGAIPNVPILDD DKGILTIQGRNLYNTSIKIYSTNILKDXNPIGALXTSHFXVTFSAEXFLTPNNWTIEVSI CGSFYKSYSYPYLPVLIKMEGALNDNGCNMVFTGKHLRPKXNVTGTFGNKTIECXTTNFS KSITCTIPSXKSYGXLGYDIPVTITIDGEYKSNTIKISXDIPRYTFKIKKrniilfff
Translated Amino Acid sequence (All Frames)	Frame A: ivfililfqnesfiylyiviglificeikllfkiknrmykiniiiwyccqck ngyswreilfstkvslqefamrfkyfnihtrnpiipkythnrwrirvhlqlslhlan sqrnrnrknfiisqfykqkisslltwiqgvvlicflkisrfiqllklvpypmyqfsm mikvflfkvvixttlqlkfiqltfktptllvhxilpifxshfplxnflqiigqlkxq yvahfikaipthiyrcsskwrghlmimvviwyllesidqnxmllvllvikllsvsqpif qkahvpfqvlkvmvxlvmiflqlllmentnqiqlkyhxifqgillkknkeiysfff Frame B: sflfyynfnkmkvlyiyilllvckflfvksscslkyekiectnefetfelyngtvvnvk mdtvggryyfnplkfpyknllcdlnilikftpeipsfpnipttggefgftfnfpctykrt vkeigtertllslsfdtskksvryllgsrawcfkfvfkypdfefnfnwchtqctnsr *ryfnysrssxqhfnnlfnhferxqpywctxyfpfxchifrxifnskldnsxn mwlilklflpiftgahqngggt**wlygiywkafktktqcywyfw*nyvxhnqff kkhnmyhskxklwxswlyscnnyywriqikynniixyskvyfnkkikkyntlff Frame C: rfyfniiiltkkfyifiycywfvnfylnqvalnmkknvqmnlkhlnyimvllsmk wiqlegdiilihsfltricyaiiflnshqkshhsqiypqqvensgspstflapiseq skkEQKELYYLSVLIQAKNQFVTYLDPGRGALNLFFENIQILNSTFETGAIPNVPILDD DKGILTIQGRNLYNTSIKIYSTNILKDXNPIGALXTSHFXVTFSAEXFLTPNNWTIEVSI CGSFYKSYSYPYLPVLIKMEGALNDNGCNMVFTGKHLRPKXNVTGTFGNKTIECXTTNFS KSITCTIPSXKSYGXLGYDIPVTITIDGEYKSNTIKISXDIPRYTFKIKK*rniilfff
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHS470 (CHS470Q) /CSM/CH/CHS4-C/CHS470Q.Seq.d/ 1895 0.0 SSA251 (SSA251Q) /CSM/SS/SSA2-C/SSA251Q.Seq.d/ 835 0.0 AHQ403 (AHQ403Q) /CSM/AH/AHQ4-A/AHQ403Q.Seq.d/ 739 0.0 AHD390 (AHD390Q) /CSM/AH/AHD3-D/AHD390Q.Seq.d/ 739 0.0 AHQ878 (AHQ878Q) /CSM/AH/AHQ8-D/AHQ878Q.Seq.d/ 729 0.0 AFD248 (AFD248Q) /CSM/AF/AFD2-B/AFD248Q.Seq.d/ 680 0.0 AHL535 (AHL535Q) /CSM/AH/AHL5-B/AHL535Q.Seq.d/ 553 e-156 CHO260 (CHO260Q) /CSM/CH/CHO2-C/CHO260Q.Seq.d/ 549 e-155 AHQ355 (AHQ355Q) /CSM/AH/AHQ3-C/AHQ355Q.Seq.d/ 549 e-155 SHI192 (SHI192Q) /CSM/SH/SHI1-D/SHI192Q.Seq.d/ 474 e-132
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AF258615\|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds. 418 0.0 4 AC116982\|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 96 2e-15 1 CR382400\|CR382400.1 Plasmodium falciparum chromosome 6, complete sequence; segment 3/5. 36 0.003 12 AQ268405\|AQ268405.1 RPCI11-74E5.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-74E5, genomic survey sequence. 50 0.098 1 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 0.25 12 CD749454\|CD749454.1 rd55c08.y1 Meloidogyne incognita parasitic adult female SL1 TOPO v1 Meloidogyne incognita cDNA 5', mRNA sequence. 36 0.36 2 BJ916409\|BJ916409.1 Oryzias latipes cDNA clone:MF01ALA011b12, 3' end. 48 0.39 1 BJ744045\|BJ744045.1 Oryzias latipes cDNA clone:MF015DA022o03, 3' end. 48 0.39 1 BJ025140\|BJ025140.1 Oryzias latipes cDNA clone:MF01SSA156G02 : 3' end, single read. 48 0.39 1 AC170577\|AC170577.1 Bos taurus clone CH240-195D1, * SEQUENCING IN PROGRESS *, 21 unordered pieces. 32 1.3 8
dna update	2005.12. 1
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value FJ374903_1(FJ374903\|pid:none) Dictyostelium discoideum strain QS... 348 e-147 FJ374912_1(FJ374912\|pid:none) Dictyostelium discoideum strain QS... 348 e-147 FJ374891_1(FJ374891\|pid:none) Dictyostelium discoideum strain QS... 347 e-147 FJ374895_1(FJ374895\|pid:none) Dictyostelium discoideum strain QS... 349 e-147 FJ374893_1(FJ374893\|pid:none) Dictyostelium discoideum strain QS... 349 e-147 FJ374901_1(FJ374901\|pid:none) Dictyostelium discoideum strain QS... 345 e-147 FJ374915_1(FJ374915\|pid:none) Dictyostelium discoideum strain QS... 347 e-146 FJ374902_1(FJ374902\|pid:none) Dictyostelium discoideum strain QS... 342 e-145 FJ374909_1(FJ374909\|pid:none) Dictyostelium discoideum strain QS... 338 e-142 FJ374910_1(FJ374910\|pid:none) Dictyostelium discoideum strain QS... 337 e-140
protein update	2009. 4.13
PSORT	psg: 0.75 gvh: 0.42 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.09 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: cytoplasmic 24.0 %: nuclear 16.0 %: mitochondrial 8.0 %: vacuolar 8.0 %: peroxisomal >> prediction for CHS470 is cyt
5' end seq. ID	CHS470F
5' end seq.	>CHS470F.Seq ATCGTTTTTATTTTAATATTATAATTTTAACAAAATGAAAGTTTTATATATTTATATATT GTTATTGGTTTGTAAATTTTTATTTGTGAAATCAAGTTGCTCTTTAAAATATGAAAAAAT AGAATGTACAAATGAATTTGAAACATTTGAATTATATAATGGTACTGTTGTCAATGTAAA AATGGATACAGTTGGAGGGAGATATTATTTTAATCCACTAAAGTTTCCTTACAAGAATTT GCTATGCGATTTAAATATTTTAATTAAATTCACACCAGAAATCCCATCATTCCCAAATAT ACCCACAACAGGTGGAGAATTCGGGTTCACCTTCAACTTTCCTTGCACCTATAAGCGAAC AGTCAAAGAAATAGGAACAGAAAGAACTTTATTATCTCTCAGTTTTGATACAAGCAAAAA ATCAGTTCGTTACTTACTTGGATCCAGGGCGTGGTGCTTTAAATTTGTTTTTTGAAAATA TCCAGATTTTGAATTCAACTTTTGAAACTGGTGCCATACCCAATGTACCAATTCTCGATG ATGATAAAGGTATTTTANNNNNNNNNN
Length of 5' end seq.	567
3' end seq. ID	CHS470Z
3' end seq.	>CHS470Z.Seq NNNNNNNNNNATTTGTTTTTTGAAAATATCCAGATTTTGAATTCAACTTTTGAAACTGGT GCCATACCCAATGTACCAATTNTCGATGATGATAAAGGTATTTTAACTATTCAAGGTCGT AATCTNTACAACACTTCAATTAAAATTTATTCAACTAACATTTTGAAAGACNCCAACCCT ATTGGTGCACTANATACTTCCCATTTTTNTGTCACATTTTCCGCTGAANAATTTTTAACT CCAAATAATTGGACAATTGAAGTNTCAATATGTGGCTCATTTTATAAAAGCTATTCCTAC CCATATTTACCGGTGCTCATCAAAATGGAGGGGGCACTTAATGATAATGGTTGTAATATG GTATTTACTGGAAAGCATTTAAGACCAAAACNCAATGTTACTGGTACTTTTGGTAATAAA ACTATTGAGTGTNTCACAACCAATTTTTCAAAAAGCATAACATGTACCATTCCAAGTNTT AAAAGTTATGGTTNTCTTGGTTATGATATTCCTGTAACAATTACTATTGATGGAGAATAC AAATCAAATACAATTAAAATATCATANGATATTCCAAGGTATACTTTTAAAATAAAAAAA TAAAGAAATATAATACTCTTTTTTTTTT
Length of 3' end seq.	628
Connected seq. ID	CHS470P
Connected seq.	>CHS470P.Seq ATCGTTTTTATTTTAATATTATAATTTTAACAAAATGAAAGTTTTATATATTTATATATT GTTATTGGTTTGTAAATTTTTATTTGTGAAATCAAGTTGCTCTTTAAAATATGAAAAAAT AGAATGTACAAATGAATTTGAAACATTTGAATTATATAATGGTACTGTTGTCAATGTAAA AATGGATACAGTTGGAGGGAGATATTATTTTAATCCACTAAAGTTTCCTTACAAGAATTT GCTATGCGATTTAAATATTTTAATTAAATTCACACCAGAAATCCCATCATTCCCAAATAT ACCCACAACAGGTGGAGAATTCGGGTTCACCTTCAACTTTCCTTGCACCTATAAGCGAAC AGTCAAAGAAATAGGAACAGAAAGAACTTTATTATCTCTCAGTTTTGATACAAGCAAAAA ATCAGTTCGTTACTTACTTGGATCCAGGGCGTGGTGCTTTAAATTTGTTTTTTGAAAATA TCCAGATTTTGAATTCAACTTTTGAAACTGGTGCCATACCCAATGTACCAATTCTCGATG ATGATAAAGGTATTTTA----------ATTTGTTTTTTGAAAATATCCAGATTTTGAATT CAACTTTTGAAACTGGTGCCATACCCAATGTACCAATTNTCGATGATGATAAAGGTATTT TAACTATTCAAGGTCGTAATCTNTACAACACTTCAATTAAAATTTATTCAACTAACATTT TGAAAGACNCCAACCCTATTGGTGCACTANATACTTCCCATTTTTNTGTCACATTTTCCG CTGAANAATTTTTAACTCCAAATAATTGGACAATTGAAGTNTCAATATGTGGCTCATTTT ATAAAAGCTATTCCTACCCATATTTACCGGTGCTCATCAAAATGGAGGGGGCACTTAATG ATAATGGTTGTAATATGGTATTTACTGGAAAGCATTTAAGACCAAAACNCAATGTTACTG GTACTTTTGGTAATAAAACTATTGAGTGTNTCACAACCAATTTTTCAAAAAGCATAACAT GTACCATTCCAAGTNTTAAAAGTTATGGTTNTCTTGGTTATGATATTCCTGTAACAATTA CTATTGATGGAGAATACAAATCAAATACAATTAAAATATCATANGATATTCCAAGGTATA CTTTTAAAATAAAAAAATAAAGAAATATAATACTCTTTTTTTTTT
Length of connected seq.	1175
Full length Seq ID	CHS470E
Full length Seq.	>CHS470E.Seq ATCGTTTTTATTTTAATATTATAATTTTAACAAAATGAAAGTTTTATATATTTATATATT GTTATTGGTTTGTAAATTTTTATTTGTGAAATCAAGTTGCTCTTTAAAATATGAAAAAAT AGAATGTACAAATGAATTTGAAACATTTGAATTATATAATGGTACTGTTGTCAATGTAAA AATGGATACAGTTGGAGGGAGATATTATTTTAATCCACTAAAGTTTCCTTACAAGAATTT GCTATGCGATTTAAATATTTTAATTAAATTCACACCAGAAATCCCATCATTCCCAAATAT ACCCACAACAGGTGGAGAATTCGGGTTCACCTTCAACTTTCCTTGCACCTATAAGCGAAC AGTCAAAGAAATAGGAACAGAAAGAACTTTATTATCTCTCAGTTTTGATACAAGCAAAAA ATCAGTTCGTTACTTACTTGGATCCAGGGCGTGGTGCTTTAAATTTGTTTTTTGAAAATA TCCAGATTTTGAATTCAACTTTTGAAACTGGTGCCATACCCAATGTACCAATTCTCGATG ATGATAAAGGTATTTTAACTATTCAAGGTCGTAATCTNTACAACACTTCAATTAAAATTT ATTCAACTAACATTTTGAAAGACNCCAACCCTATTGGTGCACTANATACTTCCCATTTTT NTGTCACATTTTCCGCTGAANAATTTTTAACTCCAAATAATTGGACAATTGAAGTNTCAA TATGTGGCTCATTTTATAAAAGCTATTCCTACCCATATTTACCGGTGCTCATCAAAATGG AGGGGGCACTTAATGATAATGGTTGTAATATGGTATTTACTGGAAAGCATTTAAGACCAA AACNCAATGTTACTGGTACTTTTGGTAATAAAACTATTGAGTGTNTCACAACCAATTTTT CAAAAAGCATAACATGTACCATTCCAAGTNTTAAAAGTTATGGTTNTCTTGGTTATGATA TTCCTGTAACAATTACTATTGATGGAGAATACAAATCAAATACAATTAAAATATCATANG ATATTCCAAGGTATACTTTTAAAATAAAAAAATAAAGAAATATAATACTCTTTTTTTTTT
Length of full length seq.	1080

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas