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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS468
Library CH
(Link to library)
Clone ID CHS468
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16411-1|Contig-U16470-1
Original site URL
Representative seq. ID CHS468P
(Link to Original site)
Representative DNA sequence 
>CHS468 (CHS468Q) /CSM/CH/CHS4-C/CHS468Q.Seq.d/
ACTGTTGGCCTACTGGATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAA
AATTTTTTATTTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACA
TACATATATATATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAA
GAATTTACTGATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAA
TCAAATGTACAATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAAT
TTAGCAAAATCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTT
AAAAGATTATTAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAAT
TCATTATTTTTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCT
CATTTAGCAGTTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTA
TTGGGAGATGCTGGTGCAACCAXXXXXXXXXXTGAATATATGGANCAACATTCGGTTTCT
CGTTTAATTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTGGTCAATTAACTGAA
GCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATCAA
CAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGT
AGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATAC
ATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAA
GATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGAT
GATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAA
TTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGAT
GCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAA
CGTTACATTGAAAAGAATATTGTCACTGACCTTAGTAAACTCATCCTTGGTGGTAAATTA
AAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATA
GATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTAAA
AAAAAAAATAAAAAATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
tvglld**iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPE
EFTDKTNTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGF
KRLLAKQPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSV
LGDAGAT---

---EYMXQHSVSRLIGAPPGYVGYDQGGQLTEAVRRRPYSVVLFDEVEKAHQQVWNVLLQ
VLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYILGEQANKEGGNNSLSQACKDKVIDEVR
KHFRPEFLNRLDDIIVFTPLSKENLHSIITLQLRSVEKRLEDQNMSLKISNDALDSIINA
AYDPIFGGRPLKRYIEKNIVTDLSKLILGGKLKENQGVVVNEKDHHLNFDIIDLKQQQQR
PASPTKKQKTIKKKNKK*
Translated Amino Acid sequence (All Frames) 
Frame A:
tvglld**iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPE
EFTDKTNTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGF
KRLLAKQPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSV
LGDAGAT---

---*iygxtfgfsfnwcstrlcrl*srwsin*srqkktiqcsiv**s*kssstslecslt
sig*rssyrwsr*nrrflkccyhydlkfr*sihpw*tskqrrw*qlfitsl*r*sh**s*
ktfpsrvfkssr*ynclysie*rkps*yyyssikirrkeirrskyvfkdfkrcfrfnyqc
ci*snlww*tietlh*keych*p**thpww*ikrksrcccq*krsssql*yyrfkttttt
ssfsnqktkny*kkk*ki

Frame B:
llaywink**lkfayikeikifyfl*tyyfl*inhiifqhtyiyiyf*nkik*kchliqk
nllikqiqfc*elknwqeknqmyn*hqyiwllhy*mmkii*qnlylkklvemyqklmlvl
kdy*pnnlfkiqyhlkflqihyfykf*dqqhvikrimvili*qlti*ywdywmieiyyqy
wemlvqp---

---EYMXQHSVSRLIGAPPGYVGYDQGGQLTEAVRRRPYSVVLFDEVEKAHQQVWNVLLQ
VLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYILGEQANKEGGNNSLSQACKDKVIDEVR
KHFRPEFLNRLDDIIVFTPLSKENLHSIITLQLRSVEKRLEDQNMSLKISNDALDSIINA
AYDPIFGGRPLKRYIEKNIVTDLSKLILGGKLKENQGVVVNEKDHHLNFDIIDLKQQQQR
PASPTKKQKTIKKKNKK*

Frame C:
cwptglinnn*nlhi*kk*kffifckhiifck*ii*ffnihiyiyifkik*nknvi*srr
iy**nkynfvknsrigkrkikctistntfgcyiik**r*fskiyi*kswwrctkn*cwf*
kiisqttcsksstt*nfskfiiftsfkisstsske*w*fsfss*pfnigiig**ryiisi
grcwcn---

---niwxnirflv*lvlhqvm*vmikvvn*lkpseedhtv*yclmklkklinkfgmfsyk
ywmkvvlpmvkvep*isqmllsl*pqi*vvntslvnkqtkkvvttlyhklvkikslmkle
nisvqsf*ivsmi*lsllh*vkktfivlllfn*dpskrd*kikicl*rfqtml*iqlsml
hmiqslvvdh*nvtlkrilsltlvnsslvvn*kkikvllsmkkiiistlil*i*nnnnnv
qllqpknkkllkkkikn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS468 (CHS468Q) /CSM/CH/CHS4-C/CHS468Q.Seq.d/                       2187   0.0
SHL818 (SHL818Q) /CSM/SH/SHL8-A/SHL818Q.Seq.d/                       1427   0.0
SHL672 (SHL672Q) /CSM/SH/SHL6-C/SHL672Q.Seq.d/                       1427   0.0
SHK668 (SHK668Q) /CSM/SH/SHK6-C/SHK668Q.Seq.d/                       1427   0.0
SHK475 (SHK475Q) /CSM/SH/SHK4-D/SHK475Q.Seq.d/                       1427   0.0
SHJ832 (SHJ832Q) /CSM/SH/SHJ8-B/SHJ832Q.Seq.d/                       1427   0.0
SHJ825 (SHJ825Q) /CSM/SH/SHJ8-B/SHJ825Q.Seq.d/                       1427   0.0
SHG860 (SHG860Q) /CSM/SH/SHG8-C/SHG860Q.Seq.d/                       1427   0.0
SHG851 (SHG851Q) /CSM/SH/SHG8-C/SHG851Q.Seq.d/                       1427   0.0
SHG305 (SHG305Q) /CSM/SH/SHG3-A/SHG305Q.Seq.d/                       1427   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CP000029|CP000029.1 Staphylococcus epidermidis RP62A, complete genome.    92   5e-23  3
AE016746|AE016746.1 Staphylococcus epidermidis ATCC 12228, section 3 of 9 of the complete genome.    92   5e-23  3
AX145048|AX145048.1 Sequence 3770 from Patent WO0134809.           92   5e-23  3
AR485684|AR485684.1 Sequence 3770 from patent US 6703492.          92   5e-23  3
AF269730|AF269730.1 Staphylococcus epidermidis strain SR1 clone step.1020d12 genomic sequence.    92   5e-23  3
AX143829|AX143829.1 Sequence 2551 from Patent WO0134809.           92   6e-23  3
AR484857|AR484857.1 Sequence 2551 from patent US 6703492.          92   6e-23  3
AL399818|AL399818.1 T7 end of clone AS0AA017F07 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.    58   6e-16  4
AB239684|AB239684.1 Tetragenococcus halophilus gene for ClpB, complete cds.    76   1e-15  2
CP000033|CP000033.1 Lactobacillus acidophilus NCFM, complete genome.    60   8e-14  3
dna update 2005.12. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY764155_1(AY764155|pid:none) Vitis vinifera heat shock protein ...   265   2e-69
AJ970534_1(AJ970534|pid:none) Triticum turgidum subsp. durum par...   264   6e-69
CP000806_1939(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...   263   8e-69
AJ970533_1(AJ970533|pid:none) Triticum turgidum subsp. durum par...   263   1e-68
(Q6F2Y7) RecName: Full=Heat shock protein 101;  &AC130611_3(AC13...   263   1e-68
AF097363_1(AF097363|pid:none) Triticum aestivum heat shock prote...   263   1e-68
L35272_1(L35272|pid:none) Glycine max heat shock protein (SB100)...   262   2e-68
CP000806_3217(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...   262   2e-68
AJ970535_1(AJ970535|pid:none) Triticum turgidum subsp. durum par...   261   3e-68
CP001358_568(CP001358|pid:none) Desulfovibrio desulfuricans subs...   261   3e-68
protein update 2009. 4.13
PSORT 

 psg: 0.63  gvh: 0.36  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHS468 is nuc
5' end seq. ID CHS468F
5' end seq. 
>CHS468F.Seq
ACTGTTGGCCTACTGGATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAA
AATTTTTTATTTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACA
TACATATATATATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAA
GAATTTACTGATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAA
TCAAATGTACAATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAAT
TTAGCAAAATCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTT
AAAAGATTATTAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAAT
TCATTATTTTTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCT
CATTTAGCAGTTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTA
TTGGGAGATGCTGGTGCAACCANNNNNNNNNN
Length of 5' end seq. 572
3' end seq. ID CHS468Z
3' end seq. 
>CHS468Z.Seq
NNNNNNNNNNTGAATATATGGANCAACATTCGGTTTCTCGTTTAATTGGTGCTCCACCAG
GTTATGTAGGTTATGATCAAGGTGGTCAATTAACTGAAGCCGTCAGAAGAAGACCATACA
GTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTAC
AAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATG
TTGTTATCATTATGACCTCAAATTTAGGTAGTCAATACATCCTTGGTGAACAAGCAAACA
AAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTA
GAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCAT
TGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGAT
TAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATG
CTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTG
TCACTGACCTTAGTAAACTCATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTG
TCAATGAAAAAGATCATCATCTCAACTTTGATATTATAGATTTAAAACAACAACAACAAC
GTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTAAAAAAAAAAATAAAAAATAA
Length of 3' end seq. 776
Connected seq. ID CHS468P
Connected seq. 
>CHS468P.Seq
ACTGTTGGCCTACTGGATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAA
AATTTTTTATTTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACA
TACATATATATATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAA
GAATTTACTGATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAA
TCAAATGTACAATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAAT
TTAGCAAAATCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTT
AAAAGATTATTAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAAT
TCATTATTTTTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCT
CATTTAGCAGTTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTA
TTGGGAGATGCTGGTGCAACCA----------TGAATATATGGANCAACATTCGGTTTCT
CGTTTAATTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTGGTCAATTAACTGAA
GCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATCAA
CAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGT
AGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATAC
ATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAA
GATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGAT
GATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAA
TTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGAT
GCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAA
CGTTACATTGAAAAGAATATTGTCACTGACCTTAGTAAACTCATCCTTGGTGGTAAATTA
AAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATA
GATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTAAA
AAAAAAAATAAAAAATAA
Length of connected seq. 1328
Full length Seq ID -
Full length Seq. -
Length of full length seq. -