CHS466
Library CH
(Link to library)
Clone ID CHS466
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15680-1
Original site URL
Representative seq. ID CHS466P
(Link to Original site)
Representative DNA sequence
>CHS466 (CHS466Q) /CSM/CH/CHS4-C/CHS466Q.Seq.d/
ATTAATNATAGTCAACAAAATGTGTAAATATAATGATCATAAATATTTAGTAGAAAAGGT
AGATAGATTGGTATTACCAGAAAATGTTGTACCAATTAAATATGATTTACATTTAAAACC
AAATTTAAAAGAATTTACTTTTAAAGGTGAAGAGACCATCACAGTTCAAGTAAAACAACC
AACAAAAACCATAACTATACATTCAATTGAAATTGAAATTCAATCAGCTTCAATAAAATC
ATCATCATCATCTCAATCATCAAAATCAATTACATTTTATGAACCAGAAGAAGTTGTCAT
CTTTGAATTTGAAAATGAATTATCAGTTGGTGAATATTGTTTATCATTGGTATTTACTGG
TTTATTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAGTATACTGTTAAAGGTGAAGA
TCGTTATTTAGCAACAACTCAATTCGAAGCCACCGATGCTCGTCGTTCTTTTCCATGTTT
TGATGAACCAGCTCATAAAGCAGTTTTCAATATCACTTTAACTGTCTCTGAATGTCATAC
CGCTATTTCAAATATGGAAGAAAAATCAATTACTCCAAATAATGATGGTACTAAAACTTA
TATATTCGAXXXXXXXXXXCTTGGAAGAAATGATCCGTAAATTGTTGAAACCATTATCAC
AACGTTTAGGCTTTGAAGTTAAATCAGGTGAATCATCCTCTGACACTTTGTTAAGAAATA
AAGTAAACTCTTATTTGGGTATTTTGGGTGACAAAGAGATTGTGGCCGAGGCTAGAAAGA
GATTTGAGCAATTCAAAGTCGACCAATCTTCTTTACCTTCCGATATCCGTTCAAGTGTTT
TAGTCACTGTTGTAAAGAATGGTTCCGAAGCTGAACAACAAGAAATTATCAATAGATACC
TCGCTTCCAATGATATTGCAGAGAAATCAAGTTTATTGTCAGTTGTTTGCAAATCACCAT
CCAGTGCATTGGTATTGAAGGCTTTGGAATTCTCTGTCTCAAAAGATGTTAGAACTTGTG
AATCCTATATGCTTTGGAGAGTCGGAAATGAATTTAAACCAGTAGTTTGGAAATATTTCA
CTGAAAACTTTAAATCAATCAATGAAACCTTTAATCAAAATGTTTTATTCGCTTATATGA
TCTCTTTTGCTTTGTCCTCAAAAATGACTGATCAACAATTACAACAAGTTGAAGATTTCT
TCAAACAAAATCCAGTTGCAATTGCTGATCGTTCAATTAAACAAGATTTAGAACAAATTA
GAAATAATACAAAATGGTTTAATTCATTTAATAAAGATTTATTAAATGGATTAAAAAATA
AATAATCTATTTAATAAAGATTTATAAATT
sequence update 2002.10.25
Translated Amino Acid sequence
LXIVNKMCKYNDHKYLVEKVDRLVLPENVVPIKYDLHLKPNLKEFTFKGEETITVQVKQP
TKTITIHSIEIEIQSASIKSSSSSQSSKSITFYEPEEVVIFEFENELSVGEYCLSLVFTG
LLNDKLKGFYRSKYTVKGEDRYLATTQFEATDARRSFPCFDEPAHKAVFNITLTVSECHT
AISNMEEKSITPNNDGTKTYIF---

---LEEMIRKLLKPLSQRLGFEVKSGESSSDTLLRNKVNSYLGILGDKEIVAEARKRFEQ
FKVDQSSLPSDIRSSVLVTVVKNGSEAEQQEIINRYLASNDIAEKSSLLSVVCKSPSSAL
VLKALEFSVSKDVRTCESYMLWRVGNEFKPVVWKYFTENFKSINETFNQNVLFAYMISFA
LSSKMTDQQLQQVEDFFKQNPVAIADRSIKQDLEQIRNNTKWFNSFNKDLLNGLKNK*si
**rfin


Translated Amino Acid sequence (All Frames)
Frame A:
inxsqqnv*i**s*ifsrkgr*igitrkcctn*i*ftfktkfkriyf*r*rdhhsssktt
nknhnytfn*n*nsisfnkiiiiisiikinyil*trrschl*i*k*iisw*ilfiigiyw
fik*qikrflsfkvyc*r*rslfsnnsirshrcssffsmf**tss*ssfqyhfncl*msy
ryfkygrkinysk**wy*nlyir---

---lgrndp*ivetiittfrl*s*ir*iil*hfvkk*skllfgyfg*qrdcgrg*kei*a
iqsrpifftfrypfkcfshcckewfrs*ttrnyq*iprfq*ycreikfivsclqitiqci
giegfgilclkrc*nl*ilyalesrk*i*tssleifh*kl*inq*nl*skcfirlydlfc
fvlknd*stitts*rflqtksscnc*sfn*trfrtn*k*ykmv*fi**rfikwikk*iiy
likiyk

Frame B:
LXIVNKMCKYNDHKYLVEKVDRLVLPENVVPIKYDLHLKPNLKEFTFKGEETITVQVKQP
TKTITIHSIEIEIQSASIKSSSSSQSSKSITFYEPEEVVIFEFENELSVGEYCLSLVFTG
LLNDKLKGFYRSKYTVKGEDRYLATTQFEATDARRSFPCFDEPAHKAVFNITLTVSECHT
AISNMEEKSITPNNDGTKTYIF---

---LEEMIRKLLKPLSQRLGFEVKSGESSSDTLLRNKVNSYLGILGDKEIVAEARKRFEQ
FKVDQSSLPSDIRSSVLVTVVKNGSEAEQQEIINRYLASNDIAEKSSLLSVVCKSPSSAL
VLKALEFSVSKDVRTCESYMLWRVGNEFKPVVWKYFTENFKSINETFNQNVLFAYMISFA
LSSKMTDQQLQQVEDFFKQNPVAIADRSIKQDLEQIRNNTKWFNSFNKDLLNGLKNK*si
**rfin

Frame C:
*x*stkcvnimiini**kr*idwyyqkmlyqlnmiyi*nqi*knlllkvkrpsqfk*nnq
qkp*lyiqlklkfnqlq*nhhhhlnhqnqlhfmnqkklsslnlkmnyqlvnivyhwyllv
y*mtn*kvsivqsillkvkivi*qqlnskppmlvvlfhvlmnqlikqfsisl*lslnvip
lfqiwkknqllqimmvlkliys---

---wkk*svnc*nhyhnv*alklnqvnhpltlc*eik*tliwvfwvtkrlwprlerdlsn
skstnllylpisvqvf*sll*rmvpklnnkklsidtslpmilqrnqvycqlfanhhpvhw
y*rlwnslsqkmlelvnpicfgesemnlnq*fgnislktlnqsmkplikmfysli*slll
cpqk*linnynklkissnkiqlqllivqlnki*nkleiiqnglihlikiy*md*kinnlf
nkdl*i

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHS466 (CHS466Q) /CSM/CH/CHS4-C/CHS466Q.Seq.d/ 1943 0.0
VHO863 (VHO863Q) /CSM/VH/VHO8-C/VHO863Q.Seq.d/ 1310 0.0
VHO805 (VHO805Q) /CSM/VH/VHO8-A/VHO805Q.Seq.d/ 1310 0.0
AHH157 (AHH157Q) /CSM/AH/AHH1-C/AHH157Q.Seq.d/ 1310 0.0
AHC169 (AHC169Q) /CSM/AH/AHC1-C/AHC169Q.Seq.d/ 1310 0.0
AHB596 (AHB596Q) /CSM/AH/AHB5-D/AHB596Q.Seq.d/ 1310 0.0
AHL121 (AHL121Q) /CSM/AH/AHL1-A/AHL121Q.Seq.d/ 1308 0.0
AHE447 (AHE447Q) /CSM/AH/AHE4-B/AHE447Q.Seq.d/ 1308 0.0
AHE251 (AHE251Q) /CSM/AH/AHE2-C/AHE251Q.Seq.d/ 1308 0.0
SHD772 (SHD772Q) /CSM/SH/SHD7-C/SHD772Q.Seq.d/ 1306 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY631393|AY631393.1 Dictyostelium discoideum puromycin-sensitive aminopeptidase-like protein (psa) mRNA, partial cds. 1066 0.0 2
CP000111|CP000111.1 Prochlorococcus marinus str. MIT 9312, complete genome. 44 0.017 2
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 36 0.12 20
CT352990|CT352990.1 Sus scrofa genomic clone CH242-458C8, genomic survey sequence. 44 0.16 2
DT174814|DT174814.1 JGI_ANNO44615.fwd ANNO Pimephales promelas Whole (M) Pimephales promelas cDNA clone ANNO44615 5', mRNA sequence. 48 0.49 1
CO173382|CO173382.1 NDL1_35_G03.g1_A029 Needles control Pinus taeda cDNA clone NDL1_35_G03_A029 5', mRNA sequence. 48 0.49 1
CF665957|CF665957.1 RTCNT1_19_E07.g1_A029 Root control Pinus taeda cDNA clone RTCNT1_19_E07_A029 5', mRNA sequence. 48 0.49 1
AC079501|AC079501.1 Mus musculus clone RP23-228N12, WORKING DRAFT SEQUENCE, 16 unordered pieces. 48 0.49 1
AC160785|AC160785.2 Bos taurus clone CH240-95H15, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces. 48 0.49 1
AC156028|AC156028.1 Mus musculus chromosome 8 clone RP23-61A11, WORKING DRAFT SEQUENCE, 10 unordered pieces. 48 0.49 1
dna update 2005.12. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY631393_1(AY631393|pid:none) Dictyostelium discoideum puromycin... 427 e-118
AE014296_282(AE014296|pid:none) Drosophila melanogaster chromoso... 137 1e-30
AE014296_281(AE014296|pid:none) Drosophila melanogaster chromoso... 137 1e-30
AF350242_1(AF350242|pid:none) Pichia angusta aminopeptidase gene... 136 2e-30
AF327435_1(AF327435|pid:none) Drosophila melanogaster puromycin-... 135 3e-30
FM992688_411(FM992688|pid:none) Candida dubliniensis CD36 chromo... 129 2e-28
(P55786) RecName: Full=Puromycin-sensitive aminopeptidase; ... 128 4e-28
BC098978_1(BC098978|pid:none) Xenopus laevis hypothetical protei... 127 1e-27
A65888_1(A65888|pid:none) Sequence 1 from Patent WO9738114. &Y0... 126 1e-27
AJ851657_1(AJ851657|pid:none) Gallus gallus mRNA for hypothetica... 126 2e-27
protein update 2009. 4.13
PSORT

psg: 0.53 gvh: 0.26 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for CHS466 is cyt

5' end seq. ID CHS466F
5' end seq.
>CHS466F.Seq
ATTAATNATAGTCAACAAAATGTGTAAATATAATGATCATAAATATTTAGTAGAAAAGGT
AGATAGATTGGTATTACCAGAAAATGTTGTACCAATTAAATATGATTTACATTTAAAACC
AAATTTAAAAGAATTTACTTTTAAAGGTGAAGAGACCATCACAGTTCAAGTAAAACAACC
AACAAAAACCATAACTATACATTCAATTGAAATTGAAATTCAATCAGCTTCAATAAAATC
ATCATCATCATCTCAATCATCAAAATCAATTACATTTTATGAACCAGAAGAAGTTGTCAT
CTTTGAATTTGAAAATGAATTATCAGTTGGTGAATATTGTTTATCATTGGTATTTACTGG
TTTATTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAGTATACTGTTAAAGGTGAAGA
TCGTTATTTAGCAACAACTCAATTCGAAGCCACCGATGCTCGTCGTTCTTTTCCATGTTT
TGATGAACCAGCTCATAAAGCAGTTTTCAATATCACTTTAACTGTCTCTGAATGTCATAC
CGCTATTTCAAATATGGAAGAAAAATCAATTACTCCAAATAATGATGGTACTAAAACTTA
TATATTCGANNNNNNNNNN
Length of 5' end seq. 619
3' end seq. ID CHS466Z
3' end seq.
>CHS466Z.Seq
NNNNNNNNNNCTTGGAAGAAATGATCCGTAAATTGTTGAAACCATTATCACAACGTTTAG
GCTTTGAAGTTAAATCAGGTGAATCATCCTCTGACACTTTGTTAAGAAATAAAGTAAACT
CTTATTTGGGTATTTTGGGTGACAAAGAGATTGTGGCCGAGGCTAGAAAGAGATTTGAGC
AATTCAAAGTCGACCAATCTTCTTTACCTTCCGATATCCGTTCAAGTGTTTTAGTCACTG
TTGTAAAGAATGGTTCCGAAGCTGAACAACAAGAAATTATCAATAGATACCTCGCTTCCA
ATGATATTGCAGAGAAATCAAGTTTATTGTCAGTTGTTTGCAAATCACCATCCAGTGCAT
TGGTATTGAAGGCTTTGGAATTCTCTGTCTCAAAAGATGTTAGAACTTGTGAATCCTATA
TGCTTTGGAGAGTCGGAAATGAATTTAAACCAGTAGTTTGGAAATATTTCACTGAAAACT
TTAAATCAATCAATGAAACCTTTAATCAAAATGTTTTATTCGCTTATATGATCTCTTTTG
CTTTGTCCTCAAAAATGACTGATCAACAATTACAACAAGTTGAAGATTTCTTCAAACAAA
ATCCAGTTGCAATTGCTGATCGTTCAATTAAACAAGATTTAGAACAAATTAGAAATAATA
CAAAATGGTTTAATTCATTTAATAAAGATTTATTAAATGGATTAAAAAATAAATAATCTA
TTTAATAAAGATTTATAAATT
Length of 3' end seq. 741
Connected seq. ID CHS466P
Connected seq.
>CHS466P.Seq
ATTAATNATAGTCAACAAAATGTGTAAATATAATGATCATAAATATTTAGTAGAAAAGGT
AGATAGATTGGTATTACCAGAAAATGTTGTACCAATTAAATATGATTTACATTTAAAACC
AAATTTAAAAGAATTTACTTTTAAAGGTGAAGAGACCATCACAGTTCAAGTAAAACAACC
AACAAAAACCATAACTATACATTCAATTGAAATTGAAATTCAATCAGCTTCAATAAAATC
ATCATCATCATCTCAATCATCAAAATCAATTACATTTTATGAACCAGAAGAAGTTGTCAT
CTTTGAATTTGAAAATGAATTATCAGTTGGTGAATATTGTTTATCATTGGTATTTACTGG
TTTATTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAGTATACTGTTAAAGGTGAAGA
TCGTTATTTAGCAACAACTCAATTCGAAGCCACCGATGCTCGTCGTTCTTTTCCATGTTT
TGATGAACCAGCTCATAAAGCAGTTTTCAATATCACTTTAACTGTCTCTGAATGTCATAC
CGCTATTTCAAATATGGAAGAAAAATCAATTACTCCAAATAATGATGGTACTAAAACTTA
TATATTCGA----------CTTGGAAGAAATGATCCGTAAATTGTTGAAACCATTATCAC
AACGTTTAGGCTTTGAAGTTAAATCAGGTGAATCATCCTCTGACACTTTGTTAAGAAATA
AAGTAAACTCTTATTTGGGTATTTTGGGTGACAAAGAGATTGTGGCCGAGGCTAGAAAGA
GATTTGAGCAATTCAAAGTCGACCAATCTTCTTTACCTTCCGATATCCGTTCAAGTGTTT
TAGTCACTGTTGTAAAGAATGGTTCCGAAGCTGAACAACAAGAAATTATCAATAGATACC
TCGCTTCCAATGATATTGCAGAGAAATCAAGTTTATTGTCAGTTGTTTGCAAATCACCAT
CCAGTGCATTGGTATTGAAGGCTTTGGAATTCTCTGTCTCAAAAGATGTTAGAACTTGTG
AATCCTATATGCTTTGGAGAGTCGGAAATGAATTTAAACCAGTAGTTTGGAAATATTTCA
CTGAAAACTTTAAATCAATCAATGAAACCTTTAATCAAAATGTTTTATTCGCTTATATGA
TCTCTTTTGCTTTGTCCTCAAAAATGACTGATCAACAATTACAACAAGTTGAAGATTTCT
TCAAACAAAATCCAGTTGCAATTGCTGATCGTTCAATTAAACAAGATTTAGAACAAATTA
GAAATAATACAAAATGGTTTAATTCATTTAATAAAGATTTATTAAATGGATTAAAAAATA
AATAATCTATTTAATAAAGATTTATAAATT
Length of connected seq. 1340
Full length Seq ID -
Full length Seq. -
Length of full length seq. -