>CHS457 (CHS457Q) /CSM/CH/CHS4-C/CHS457Q.Seq.d/
XXXXXXXXXXTTTATGCACTTCAAAAAGTATGCCAAAGGATTGGGTAGATATTTCATTTA
TGGACCAACATCAGGCCATGAAAGAATGAGTATTCTCTCGAAATTTCAACATGATCCAAC
CGTAAGAACCATTTTCATTTCAAAGGTTGGTGATACCTCTATCGATATTCCAGAGGCAAC
CGTTATCATTCAAGTTTCATCACATTATGGTTCACGTCGTCAAGAGGCACAACGTTTAGG
TCGTATTCTTCGTCCAAAACCAAAATCTGATGGTCTTTACAATGCTTTCTTTTATTCTTT
GGTTTCAAAAGATACTCAAGAAATGTATTACAGTACAAAGAGACAACAGTTTTTAATTGA
TCAAGGTTATAGTTTTAAGGTCATTTCAGAGTTACCTGGTATTGATCAAGAAGTAAACTT
AAAATATTCTTCAAAACAAGATCAACTCGATCTATTGGCTCAAGTATTGGGTGAAGGTGA
AGATAGTGGTAAAAATGAAATTTTAGAAGAAGATTTCGATGATATTACTCGTGGTGCAAA
GAAATCAAAATCTTCTGCTCCAACAGTTTCAAGAACTACTGGTGGTTCAACTAGAGCATT
ATCTGGTGGTAATGATATGAACTATATGGAATATCAAGCTCCTGCAATTTATAAAAGTAT
TCCAACTCAACATGCATTATTTAAACAACGTGCTAAAAATAAACAATAAAAAATAAATCA
AAACAAATAAATCAAAAAAAT

---MHFKKYAKGLGRYFIYGPTSGHERMSILSKFQHDPTVRTIFISKVGDTSIDIPEATV
IIQVSSHYGSRRQEAQRLGRILRPKPKSDGLYNAFFYSLVSKDTQEMYYSTKRQQFLIDQ
GYSFKVISELPGIDQEVNLKYSSKQDQLDLLAQVLGEGEDSGKNEILEEDFDDITRGAKK
SKSSAPTVSRTTGGSTRALSGGNDMNYMEYQAPAIYKSIPTQHALFKQRAKNKQ*kinqn
k*ikk

Frame A:
---lctsksmpkdwvdisfmdqhqamke*vfsrnfnmiqp*epfsfqrlviplsifqrqp
lsfkfhhimvhvvkrhnv*vvffvqnqnlmvftmlsfilwfqkilkkcitvqrdnsf*li
kvivlrsfqsylvlikk*t*nilqnkinsiywlkywvkvkivvkmkf*kkismillvvqr
nqnlllqqfqellvvqlehylvvmi*tiwnikllqfikvfqlnmhylnnvlkinnkk*ik
tnkskk


Frame B:
---yalqkvcqrig*ifhlwtnirp*kneysleist*snrknhfhfkgw*ylyrysrgnr
yhssfitlwftssrgttfrsysssktki*wslqcfllffgfkrysrnvlqykettvfn*s
rl*f*ghfrvtwy*srsklkiffktrstrsigssig*r*r*w*k*nfrrrfr*yyswcke
ikifcsnsfknywwfn*siiww**yelygissscnl*kysnstcii*ttc*k*tiknksk
qinqkn


Frame C:
---MHFKKYAKGLGRYFIYGPTSGHERMSILSKFQHDPTVRTIFISKVGDTSIDIPEATV
IIQVSSHYGSRRQEAQRLGRILRPKPKSDGLYNAFFYSLVSKDTQEMYYSTKRQQFLIDQ
GYSFKVISELPGIDQEVNLKYSSKQDQLDLLAQVLGEGEDSGKNEILEEDFDDITRGAKK
SKSSAPTVSRTTGGSTRALSGGNDMNYMEYQAPAIYKSIPTQHALFKQRAKNKQ*kinqn
k*ikk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS457 (CHS457Q) /CSM/CH/CHS4-C/CHS457Q.Seq.d/                       1354   0.0
VHN254 (VHN254Q) /CSM/VH/VHN2-C/VHN254Q.Seq.d/                       1338   0.0
CHS338 (CHS338Q) /CSM/CH/CHS3-B/CHS338Q.Seq.d/                       1338   0.0
CHQ732 (CHQ732Q) /CSM/CH/CHQ7-B/CHQ732Q.Seq.d/                       1338   0.0
CHM270 (CHM270Q) /CSM/CH/CHM2-C/CHM270Q.Seq.d/                       1338   0.0
CHL631 (CHL631Q) /CSM/CH/CHL6-B/CHL631Q.Seq.d/                       1338   0.0
CHG470 (CHG470Q) /CSM/CH/CHG4-C/CHG470Q.Seq.d/                       1338   0.0
CHF638 (CHF638Q) /CSM/CH/CHF6-B/CHF638Q.Seq.d/                       1332   0.0
AHB279 (AHB279Q) /CSM/AH/AHB2-D/AHB279Q.Seq.d/                       1332   0.0
CHO209 (CHO209Q) /CSM/CH/CHO2-A/CHO209Q.Seq.d/                       1330   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U77065|U77065.1 Dictyostelium discoideum DNA helicase homolog (repB) gene, complete cds.  1328   0.0    2
CO095882|CO095882.1 GR__Ea18L20.r GR__Ea Gossypium raimondii cDNA clone GR__Ea18L20 3', mRNA sequence.    80   2e-19  2
CO117140|CO117140.1 GR__Eb019M05.r GR__Eb Gossypium raimondii cDNA clone GR__Eb019M05 3', mRNA sequence.    80   2e-19  2
AW651084|AW651084.1 EST329538 tomato germinating seedlings, TAMU Lycopersicon esculentum cDNA clone cLEI15O10 5', mRNA sequence.    58   5e-12  2
BG124428|BG124428.1 EST470074 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF5O19 5' sequence, mRNA sequence.    58   5e-12  2
BM409622|BM409622.1 EST583949 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG49G24 5' end, mRNA sequence.    58   6e-12  2
DR181209|DR181209.1 RTMNUT1_37_B06.g2_A029 Roots minus micronutrients Pinus taeda cDNA clone RTMNUT1_37_B06_A029 5', mRNA sequence.    54   1e-11  4
CK073263|CK073263.1 65866rsicem_9703.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa (indica cultivar-group) cDNA 5', mRNA sequence.    78   2e-11  2
BJ952644|BJ952644.1 Physcomitrella patens subsp. patens cDNA clone:pphf17h22, 3' end.    44   5e-11  3
CR382137|CR382137.1 Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii.    62   5e-11  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77065_1(U77065|pid:none) Dictyostelium discoideum DNA helicase ...   444   e-123
(O13768) RecName: Full=Probable DNA repair helicase ercc3;      ...   228   1e-58
CR382137_378(CR382137|pid:none) Debaryomyces hansenii strain CBS...   224   2e-57
FM992695_260(FM992695|pid:none) Candida dubliniensis CD36 chromo...   220   4e-56
L01414_1(L01414|pid:none) Saccharomyces cerevisiae DNA helicase ...   219   7e-56
EF676215_1(EF676215|pid:none) Picea sitchensis clone WS0271_O13 ...   214   2e-54
AM920436_1609(AM920436|pid:none) Penicillium chrysogenum Wiscons...   208   2e-52
AP007162_442(AP007162|pid:none) Aspergillus oryzae RIB40 genomic...   207   2e-52
AM270206_31(AM270206|pid:none) Aspergillus niger contig An09c017...   206   8e-52
(P49135) RecName: Full=TFIIH basal transcription factor complex ...   205   1e-51

 psg: 0.73  gvh: 0.37  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.03
 nuc: 0.06  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for CHS457 is cyt

>CHS457Z.Seq
NNNNNNNNNNTTTATGCACTTCAAAAAGTATGCCAAAGGATTGGGTAGATATTTCATTTA
TGGACCAACATCAGGCCATGAAAGAATGAGTATTCTCTCGAAATTTCAACATGATCCAAC
CGTAAGAACCATTTTCATTTCAAAGGTTGGTGATACCTCTATCGATATTCCAGAGGCAAC
CGTTATCATTCAAGTTTCATCACATTATGGTTCACGTCGTCAAGAGGCACAACGTTTAGG
TCGTATTCTTCGTCCAAAACCAAAATCTGATGGTCTTTACAATGCTTTCTTTTATTCTTT
GGTTTCAAAAGATACTCAAGAAATGTATTACAGTACAAAGAGACAACAGTTTTTAATTGA
TCAAGGTTATAGTTTTAAGGTCATTTCAGAGTTACCTGGTATTGATCAAGAAGTAAACTT
AAAATATTCTTCAAAACAAGATCAACTCGATCTATTGGCTCAAGTATTGGGTGAAGGTGA
AGATAGTGGTAAAAATGAAATTTTAGAAGAAGATTTCGATGATATTACTCGTGGTGCAAA
GAAATCAAAATCTTCTGCTCCAACAGTTTCAAGAACTACTGGTGGTTCAACTAGAGCATT
ATCTGGTGGTAATGATATGAACTATATGGAATATCAAGCTCCTGCAATTTATAAAAGTAT
TCCAACTCAACATGCATTATTTAAACAACGTGCTAAAAATAAACAATAAAAAATAAATCA
AAACAAATAAATCAAAAAAAT