CHS456
Library CH
(Link to library)
Clone ID CHS456
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHS456P
(Link to Original site)
Representative DNA sequence
>CHS456 (CHS456Q) /CSM/CH/CHS4-C/CHS456Q.Seq.d/
ATTATTGTTAAAATAAGAGTAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTG
GTATTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAA
TTATTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAG
AACGTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAATACAGTAT
TTGATGCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGA
AACATTGGCCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAAT
TCAAAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATCTCTTCAATGGTACTCTTAAAAA
TGAAAGAAACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTC
CAGCTTATTTCAATGATAGTCAACGTCAAGCAACCAAAGATGCTGGTACAATTTCAAAAT
TAAATGTTCAACGTATTATTAATGAACCAACTGCTGCTGCTATTGCTTATGGTTTAGXXX
XXXXXXXCACCAGCACCAAGAGGGTGTCCACAAGTTGAAGTTACATTTGATGTTGATGCA
AATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACA
ATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCA
GAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTG
GAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATT
TCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAA
TCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTT
GTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATG
CCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGAT
TGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGT
TAGTAAAATCAATAAAGCT
sequence update 2002.10.25
Translated Amino Acid sequence
yc*nksky*iiky*KMSSIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTE
RLIGDAAKNQVAMNPTNTVFDAKRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEF
KGETKVFSPEEISSMVLLKMKETAEAYLGKTINNAVITVPAYFNDSQRQATKDAGTISKL
NVQRIINEPTAAAIAYGL---

---PAPRGCPQVEVTFDVDANGILNVSAEDKSTGNKQKITITNDKGRLSKEEIEKMVADA
EKFKQQDEQQKDRVESKNKLENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLKWLE
SNQTAEKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD
*rnfseenisik*is*kiis**nq*s


Translated Amino Acid sequence (All Frames)
Frame A:
iivkirvnik*lnikkchqlvli*vqhihvlvfgkmivlkllqmikvieplhlmlhlliq
nv*lvmlqriklq*iqpiqylmlnv*lvvnlvtkkfkvi*nighsklfqrmvishifkln
skvklkfshqkkslqwys*k*kkplklilvkpliml*lpfqlismivnvkqpkmlvqfqn
*mfnvllmnqllllllmv*---

---hqhqegvhklklhlmlmqmvs*myqlkinqlvtnkrlqlpmikvvfqkkklkkwllm
qrnsnnkmnnkkivlnqrinwkimhsllkiqlkmkklqpkfqiqinqllnlklkvysng*
nqikpqkrmnmkir*kp*kqlsiqs*vnsikkevchkvvvcqvvcqmihqrvqttk*tn*
idgifqrktslsnrflkk**vskinka

Frame B:
lllk*e*ilnn*ilknvinwy*frynifmcwclak*sc*nyck*sr**nhsilcciy*yr
tfnw*cckesscnesnqysi*c*tfnws*i**qrssk*yetlaiqsyskgw**atyss*i
qr*n*sfltrrnlfngtlknernr*slsw*nh**ccnyrsslfq**stssnqrcwynfki
kcstyy**tncccyclwf---

---tstkrvsts*syi*c*ckwylkcis*r*inw*qtkdynyq**rssfkrrn*kngc*c
reiqttr*ttkrsc*ike*igklcihc*kfn*r*kscsqnfrfr*iny*i*n*kctqmvr
iksnrrkg*i*r*deslrsscqsnhe*tlsrrryatrwwyarwyvk*ftkefkqqsrrir
lteffrgkhlyqidflknnklvksik

Frame C:
yc*nksky*iiky*KMSSIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTE
RLIGDAAKNQVAMNPTNTVFDAKRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEF
KGETKVFSPEEISSMVLLKMKETAEAYLGKTINNAVITVPAYFNDSQRQATKDAGTISKL
NVQRIINEPTAAAIAYGL---

---PAPRGCPQVEVTFDVDANGILNVSAEDKSTGNKQKITITNDKGRLSKEEIEKMVADA
EKFKQQDEQQKDRVESKNKLENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLKWLE
SNQTAEKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD
*rnfseenisik*is*kiis**nq*s

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHS456 (CHS456Q) /CSM/CH/CHS4-C/CHS456Q.Seq.d/ 2260 0.0
CHM785 (CHM785Q) /CSM/CH/CHM7-D/CHM785Q.Seq.d/ 1199 0.0
VHQ260 (VHQ260Q) /CSM/VH/VHQ2-C/VHQ260Q.Seq.d/ 1183 0.0
VHQ240 (VHQ240Q) /CSM/VH/VHQ2-B/VHQ240Q.Seq.d/ 1183 0.0
VHP873 (VHP873Q) /CSM/VH/VHP8-D/VHP873Q.Seq.d/ 1183 0.0
VHP719 (VHP719Q) /CSM/VH/VHP7-A/VHP719Q.Seq.d/ 1183 0.0
VHP716 (VHP716Q) /CSM/VH/VHP7-A/VHP716Q.Seq.d/ 1183 0.0
VHP627 (VHP627Q) /CSM/VH/VHP6-B/VHP627Q.Seq.d/ 1183 0.0
VHP437 (VHP437Q) /CSM/VH/VHP4-B/VHP437Q.Seq.d/ 1183 0.0
VHP420 (VHP420Q) /CSM/VH/VHP4-A/VHP420Q.Seq.d/ 1183 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70). 1174 0.0 2
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,. 1166 0.0 2
AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds. 285 e-156 5
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 285 e-148 7
AF221541|AF221541.1 Cryptosporidium serpentis heat shock protein 70 (HSP70) gene, partial cds. 145 e-101 10
A58313|A58313.1 Sequence 1 from Patent WO9636707. 123 2e-99 9
Z30210|Z30210.1 C.albicans (ATCC 20955) cahsp70 mRNA for heat shock protein 70. 123 6e-99 9
AX536934|AX536934.1 Sequence 535 from Patent WO02064766. 123 7e-99 9
AY954892|AY954892.1 Cryptosporidium andersoni strain HenanZhzhca heat shock protein 70 gene, partial cds. 123 1e-93 10
AY954893|AY954893.1 Cryptosporidium andersoni strain changchunca heat shock protein 70 gene, partial cds. 129 2e-91 10
dna update 2005.12. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1; ... 360 7e-98
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ... 358 3e-97
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2; ... 338 2e-91
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc... 338 2e-91
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3; 320 8e-86
U71151_1(U71151|pid:none) Pneumocystis carinii heat shock protei... 315 2e-84
AY495382_1(AY495382|pid:none) Trypanosoma rangeli isolate Tre he... 315 2e-84
U80967_1(U80967|pid:none) Pneumocystis carinii f. sp. carinii he... 315 2e-84
(P11145) RecName: Full=Heat shock 70 kDa protein 4; AltName: Ful... 313 6e-84
EF442767_1(EF442767|pid:none) Trypanosoma rangeli isolate H14 cl... 313 1e-83
protein update 2009. 4.13
PSORT

psg: 0.87 gvh: 0.35 alm: 0.46 top: 0.27 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CHS456 is cyt

5' end seq. ID CHS456F
5' end seq.
>CHS456F.Seq
ATTATTGTTAAAATAAGAGTAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTG
GTATTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAA
TTATTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAG
AACGTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAATACAGTAT
TTGATGCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGA
AACATTGGCCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAAT
TCAAAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATCTCTTCAATGGTACTCTTAAAAA
TGAAAGAAACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTC
CAGCTTATTTCAATGATAGTCAACGTCAAGCAACCAAAGATGCTGGTACAATTTCAAAAT
TAAATGTTCAACGTATTATTAATGAACCAACTGCTGCTGCTATTGCTTATGGTTTAGNNN
NNNNNNN
Length of 5' end seq. 607
3' end seq. ID CHS456Z
3' end seq.
>CHS456Z.Seq
NNNNNNNNNNCACCAGCACCAAGAGGGTGTCCACAAGTTGAAGTTACATTTGATGTTGAT
GCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATT
ACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGAT
GCAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAA
TTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAA
ATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTA
GAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCA
GTTGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGT
ATGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTA
GATTGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATAATA
AGTTAGTAAAATCAATAAAGCT
Length of 3' end seq. 622
Connected seq. ID CHS456P
Connected seq.
>CHS456P.Seq
ATTATTGTTAAAATAAGAGTAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTG
GTATTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAA
TTATTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAG
AACGTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAATACAGTAT
TTGATGCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGA
AACATTGGCCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAAT
TCAAAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATCTCTTCAATGGTACTCTTAAAAA
TGAAAGAAACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTC
CAGCTTATTTCAATGATAGTCAACGTCAAGCAACCAAAGATGCTGGTACAATTTCAAAAT
TAAATGTTCAACGTATTATTAATGAACCAACTGCTGCTGCTATTGCTTATGGTTTAG---
-------CACCAGCACCAAGAGGGTGTCCACAAGTTGAAGTTACATTTGATGTTGATGCA
AATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACA
ATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCA
GAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTG
GAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATT
TCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAA
TCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTT
GTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATG
CCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGAT
TGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGT
TAGTAAAATCAATAAAGCT
Length of connected seq. 1209
Full length Seq ID -
Full length Seq. -
Length of full length seq. -