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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS453
Library CH
(Link to library)
Clone ID CHS453
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16372-1|Contig-U16442-1
Original site URL
Representative seq. ID CHS453P
(Link to Original site)
Representative DNA sequence 
>CHS453 (CHS453Q) /CSM/CH/CHS4-C/CHS453Q.Seq.d/
ATTTTCCCAAAATGAAACAAGATAAAATAAATGAAATTATAAATTATTTAAAATTTATTG
AAGATAATAATTTTGAAAATACTAAACATAAAAATTATAAATTTTTACATGATGAAAACA
GAAAAGAAAAATTATTTAGAATTGAAAAAAAAGTCATGAATTGTGGCGGAGATAGAAATA
TATCAAAAGAAGTGTGTTTAGAAGTAATTAATGATTATAGAATGGTATCACTCTGGGAAG
AAATGCATAAAGGTCATATAGGAAGAGATGCAACCTATGGGAACTACAAGACTAAATATT
ATAATATGGGATTGTATTCTTTTGTATCTGATGCAGTAGATACGTGTGACATTTGCCAAC
GAAATAGAATAAAAGGTATAACAAAGGATTTTGCTCCAATTGTAGATACCGAGGAATACT
CAAGATTGGTTTATGATTTAACATCAATTAAAGGTGAACATAAAGAAAAAGTTACATACG
ATGATGATAATGAAAAGATACTAACTAAACTAGATGATCTTATCCAATATGACTCTGTAC
AACCGTACGACACCGATGTTGTTXXXXXXXXXXAGATGCTCTTAACAATCCATCAAATAT
TCCACCTATCATTAGNGGATAATCCATTTCAACACAAACTCAATAATGAAATGGAACAAG
AAGAAATACTCCCATTTTTAAATAATNATCCAACAGCGCCNAATTTAATGAATTGTTTGA
GAGAAGGNTATGAATTTAAAAGAAATAGTNCCACCAATNCCTCAAGTGCAAATAATACCA
TNGTATACTATNCCNCAATCTGGTAGTGGTATAGTAACAACTGTTAAACGTCTCAGAGGC
CGTCCTCATAAGATACCAATTGTTAATAAACCTCCTTTAAAATCACATTNTAAACCATCC
AAATCACCTCTCAAATCACCATCCATTTCACCTTCCAATCCACCATTTAAATCACCATTT
AAATCACCTTCCAAATCACCATTTAAATCACCTTCCAAATCACCATCCATTTCACNNTNC
AATTCNCCATTTAAATCACCTTCCAATTCACCTTTTAAATCACCATTTAAATCACCTTNC
AAATCACCATCAATAGGAAAAATCGTTAATGTGAGGCGTTCGGGAAAAAGTTGCAAAAAC
AAAGTTNGCAAGGACACAAAAATTA
sequence update 2002.10.25
Translated Amino Acid sequence 
FPKMKQDKINEIINYLKFIEDNNFENTKHKNYKFLHDENRKEKLFRIEKKVMNCGGDRNI
SKEVCLEVINDYRMVSLWEEMHKGHIGRDATYGNYKTKYYNMGLYSFVSDAVDTCDICQR
NRIKGITKDFAPIVDTEEYSRLVYDLTSIKGEHKEKVTYDDDNEKILTKLDDLIQYDSVQ
PYDTDVV---

---MLLTIHQIFHLSLXDNPFQHKLNNEMEQEEILPFLNNXPTAPNLMNCLREGYEFKRN
SXTNXSSANNTXVYYXXIW*wysnnc*tsqrpss*dtnc**tsfkitx*tiqitsqitih
ftfqsti*iti*itfqiti*itfqitihftxqfxi*itfqftf*iti*itxqitinrknr
*ceafgkklqkqsxqghkn
Translated Amino Acid sequence (All Frames) 
Frame A:
ifpk*nkik*mkl*ii*nllkiiilkilnikiinfymmktekknylelkkks*ivaeiei
yqkkcv*k*lmiiewyhsgkkcikvi*eemqpmgttrlniiiwdcillylmq*irvtfan
eie*kv*qrillql*iprntqdwfmi*hqlkvnikkklhtmmimkry*ln*milsnmtly
nrttpml---

---rcs*qsikystyh*xiihfntnsimkwnkkkyshf*ixiqqrxi**iv*ekxmnlke
ivppxpqvqiipxytxpqsgsgivttvkrlrgrphkipivnkpplkshxkpsksplksps
ispsnppfkspfkspskspfkspskspsisxxnspfkspsnspfkspfkspxkspsigki
vnvrrsgkscknkvxkdtki

Frame B:
fsqnetr*nk*nyklfkiy*r**f*ky*t*kl*ift**kqkrkii*n*kkshelwrr*ky
ikrsvfrsn**l*ngitlgrna*rsyrkrcnlwelqd*il*ygivffci*csryv*hlpt
k*nkrynkgfcsncryrgilkigl*fnin*r*t*rksyir****kdtn*tr*sypi*lct
tvrhrcc---

---dalnnpsnippiixg*sistqtq**ngtrrntpifk*xsnsaxfnelferrx*i*kk
*xhqxlkck*yhxilxxnlvvv**qllnvseavliryqllinll*nhixnhpnhlsnhhp
fhlpihhlnhhlnhlpnhhlnhlpnhhpfhxxixhlnhlpihllnhhlnhlxnhhq*eks
lm*gvrekvaktkxartqkl

Frame C:
FPKMKQDKINEIINYLKFIEDNNFENTKHKNYKFLHDENRKEKLFRIEKKVMNCGGDRNI
SKEVCLEVINDYRMVSLWEEMHKGHIGRDATYGNYKTKYYNMGLYSFVSDAVDTCDICQR
NRIKGITKDFAPIVDTEEYSRLVYDLTSIKGEHKEKVTYDDDNEKILTKLDDLIQYDSVQ
PYDTDVV---

---MLLTIHQIFHLSLXDNPFQHKLNNEMEQEEILPFLNNXPTAPNLMNCLREGYEFKRN
SXTNXSSANNTXVYYXXIW*wysnnc*tsqrpss*dtnc**tsfkitx*tiqitsqitih
ftfqsti*iti*itfqiti*itfqitihftxqfxi*itfqftf*iti*itxqitinrknr
*ceafgkklqkqsxqghkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS453 (CHS453Q) /CSM/CH/CHS4-C/CHS453Q.Seq.d/                       1919   0.0
VHQ196 (VHQ196Q) /CSM/VH/VHQ1-D/VHQ196Q.Seq.d/                        967   0.0
VHP322 (VHP322Q) /CSM/VH/VHP3-A/VHP322Q.Seq.d/                        967   0.0
AHQ522 (AHQ522Q) /CSM/AH/AHQ5-A/AHQ522Q.Seq.d/                        967   0.0
AHQ286 (AHQ286Q) /CSM/AH/AHQ2-D/AHQ286Q.Seq.d/                        967   0.0
AHJ566 (AHJ566Q) /CSM/AH/AHJ5-C/AHJ566Q.Seq.d/                        967   0.0
AHH245 (AHH245Q) /CSM/AH/AHH2-B/AHH245Q.Seq.d/                        967   0.0
AFH495 (AFH495Q) /CSM/AF/AFH4-D/AFH495Q.Seq.d/                        961   0.0
AHJ167 (AHJ167Q) /CSM/AH/AHJ1-C/AHJ167Q.Seq.d/                        959   0.0
AHC596 (AHC596Q) /CSM/AH/AHC5-D/AHC596Q.Seq.d/                        959   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U57081|U57081.1 Dictyostelium discoideum Tdd-4 transposable element encodes putative transposition inhibitor and putative transposase, complete cds.   696   0.0    9
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   446   0.0    8
AF298206|AF298206.2 Dictyostelium discoideum transposon Tdd-5, complete sequence.    52   4e-09  2
CX398583|CX398583.1 JGI_XZT3297.fwd NIH_XGC_tropTad5 Xenopus tropicalis cDNA clone XZT3297 5', mRNA sequence.    32   5e-06  5
DN073718|DN073718.1 JGI_CABD7908.fwd NIH_XGC_tropLun1 Xenopus tropicalis cDNA clone CABD7908 5', mRNA sequence.    32   5e-06  5
CX329872|CX329872.2 JGI_XZT68527.fwd NIH_XGC_tropTad5 Xenopus tropicalis cDNA clone IMAGE:7787733 5', mRNA sequence.    32   5e-06  5
CX827626|CX827626.1 JGI_CAAK5797.fwd NIH_XGC_tropBrn3 Xenopus tropicalis cDNA clone IMAGE:7656659 5', mRNA sequence.    32   8e-06  5
AL682152|AL682152.2 Xenopus tropicalis EST, clone TGas060h18 5'.    32   2e-04  4
CX905488|CX905488.1 JGI_CAAM15418.fwd NIH_XGC_tropTe3 Xenopus tropicalis cDNA clone IMAGE:7685705 5', mRNA sequence.    32   3e-04  4
DT413795|DT413795.1 JGI_CABI12116.fwd NIH_XGC_tropOvi1 Xenopus tropicalis cDNA clone IMAGE:7864352 5', mRNA sequence.    32   4e-04  4
dna update 2005.12. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U57081_2(U57081|pid:none) Dictyostelium discoideum Tdd-4 transpo...   384   e-105
U57081_1(U57081|pid:none) Dictyostelium discoideum Tdd-4 transpo...   384   e-105
AJ893357_41(AJ893357|pid:none) Phytophthora infestans, clone PI-...    39   0.33
AC096687_18(AC096687|pid:none) Oryza sativa chromosome 3 BAC OSJ...    38   0.56
AF049230_3(AF049230|pid:none) Dictyostelium discoideum LTR-retro...    38   0.74
DQ645742_1(DQ645742|pid:none) Phytophthora sojae transposon Gyps...    37   0.96
AE001362_27(AE001362|pid:none) Plasmodium falciparum 3D7 chromos...    37   0.96
AP008212_1155(AP008212|pid:none) Oryza sativa (japonica cultivar...    37   1.6
S52564(S52564)hypothetical protein 2 (clone Db314) - fruit fly (...    37   1.6
AL844509_259(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.6
protein update 2009. 4.13
PSORT 

 psg: 0.77  gvh: 0.24  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHS453 is nuc
5' end seq. ID CHS453F
5' end seq. 
>CHS453F.Seq
ATTTTCCCAAAATGAAACAAGATAAAATAAATGAAATTATAAATTATTTAAAATTTATTG
AAGATAATAATTTTGAAAATACTAAACATAAAAATTATAAATTTTTACATGATGAAAACA
GAAAAGAAAAATTATTTAGAATTGAAAAAAAAGTCATGAATTGTGGCGGAGATAGAAATA
TATCAAAAGAAGTGTGTTTAGAAGTAATTAATGATTATAGAATGGTATCACTCTGGGAAG
AAATGCATAAAGGTCATATAGGAAGAGATGCAACCTATGGGAACTACAAGACTAAATATT
ATAATATGGGATTGTATTCTTTTGTATCTGATGCAGTAGATACGTGTGACATTTGCCAAC
GAAATAGAATAAAAGGTATAACAAAGGATTTTGCTCCAATTGTAGATACCGAGGAATACT
CAAGATTGGTTTATGATTTAACATCAATTAAAGGTGAACATAAAGAAAAAGTTACATACG
ATGATGATAATGAAAAGATACTAACTAAACTAGATGATCTTATCCAATATGACTCTGTAC
AACCGTACGACACCGATGTTGTTNNNNNNNNNN
Length of 5' end seq. 573
3' end seq. ID CHS453Z
3' end seq. 
>CHS453Z.Seq
NNNNNNNNNNAGATGCTCTTAACAATCCATCAAATATTCCACCTATCATTAGNGGATAAT
CCATTTCAACACAAACTCAATAATGAAATGGAACAAGAAGAAATACTCCCATTTTTAAAT
AATNATCCAACAGCGCCNAATTTAATGAATTGTTTGAGAGAAGGNTATGAATTTAAAAGA
AATAGTNCCACCAATNCCTCAAGTGCAAATAATACCATNGTATACTATNCCNCAATCTGG
TAGTGGTATAGTAACAACTGTTAAACGTCTCAGAGGCCGTCCTCATAAGATACCAATTGT
TAATAAACCTCCTTTAAAATCACATTNTAAACCATCCAAATCACCTCTCAAATCACCATC
CATTTCACCTTCCAATCCACCATTTAAATCACCATTTAAATCACCTTCCAAATCACCATT
TAAATCACCTTCCAAATCACCATCCATTTCACNNTNCAATTCNCCATTTAAATCACCTTC
CAATTCACCTTTTAAATCACCATTTAAATCACCTTNCAAATCACCATCAATAGGAAAAAT
CGTTAATGTGAGGCGTTCGGGAAAAAGTTGCAAAAACAAAGTTNGCAAGGACACAAAAAT
TA
Length of 3' end seq. 602
Connected seq. ID CHS453P
Connected seq. 
>CHS453P.Seq
ATTTTCCCAAAATGAAACAAGATAAAATAAATGAAATTATAAATTATTTAAAATTTATTG
AAGATAATAATTTTGAAAATACTAAACATAAAAATTATAAATTTTTACATGATGAAAACA
GAAAAGAAAAATTATTTAGAATTGAAAAAAAAGTCATGAATTGTGGCGGAGATAGAAATA
TATCAAAAGAAGTGTGTTTAGAAGTAATTAATGATTATAGAATGGTATCACTCTGGGAAG
AAATGCATAAAGGTCATATAGGAAGAGATGCAACCTATGGGAACTACAAGACTAAATATT
ATAATATGGGATTGTATTCTTTTGTATCTGATGCAGTAGATACGTGTGACATTTGCCAAC
GAAATAGAATAAAAGGTATAACAAAGGATTTTGCTCCAATTGTAGATACCGAGGAATACT
CAAGATTGGTTTATGATTTAACATCAATTAAAGGTGAACATAAAGAAAAAGTTACATACG
ATGATGATAATGAAAAGATACTAACTAAACTAGATGATCTTATCCAATATGACTCTGTAC
AACCGTACGACACCGATGTTGTT----------AGATGCTCTTAACAATCCATCAAATAT
TCCACCTATCATTAGNGGATAATCCATTTCAACACAAACTCAATAATGAAATGGAACAAG
AAGAAATACTCCCATTTTTAAATAATNATCCAACAGCGCCNAATTTAATGAATTGTTTGA
GAGAAGGNTATGAATTTAAAAGAAATAGTNCCACCAATNCCTCAAGTGCAAATAATACCA
TNGTATACTATNCCNCAATCTGGTAGTGGTATAGTAACAACTGTTAAACGTCTCAGAGGC
CGTCCTCATAAGATACCAATTGTTAATAAACCTCCTTTAAAATCACATTNTAAACCATCC
AAATCACCTCTCAAATCACCATCCATTTCACCTTCCAATCCACCATTTAAATCACCATTT
AAATCACCTTCCAAATCACCATTTAAATCACCTTCCAAATCACCATCCATTTCACNNTNC
AATTCNCCATTTAAATCACCTTCCAATTCACCTTTTAAATCACCATTTAAATCACCTTNC
AAATCACCATCAATAGGAAAAATCGTTAATGTGAGGCGTTCGGGAAAAAGTTGCAAAAAC
AAAGTTNGCAAGGACACAAAAATTA
Length of connected seq. 1155
Full length Seq ID -
Full length Seq. -
Length of full length seq. -