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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS452
Library CH
(Link to library)
Clone ID CHS452
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16313-1
Original site URL
Representative seq. ID CHS452P
(Link to Original site)
Representative DNA sequence 
>CHS452 (CHS452Q) /CSM/CH/CHS4-C/CHS452Q.Seq.d/
AATAATTATCCCTTAAAATAATAACAATAAAATAGATTTTTACATTTATTTTTATTTATT
TCATATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAGAAAAAAAGAAAAAAAAAAXXXXX
XXXXXGGTTGTGTTACACCATCACCAGTTTCAATTGGTGGAACTATCCCTCCAACCACTA
CTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATTGGTCAAAAATGTTTATTAGTCA
ATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGTGGTATTCCAGAATTAACTACTG
GTTGTGCTGGTACAACAACTGGCAGGGCTGCAGGTCATTACACAGAATCAGGTACAGGTA
ATCCACATTTATGTGATAGATATCATTGTAAAAGAGGAATGGAATGTCATGTTGTTAATG
GTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTAGATTGTTTAGATCTTCATTGTG
AGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCAAATTTCATTTCTAGTAAAC
ATAGTTGTTATGGTGAATCATGTTGTAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
iiip*NNNNKIDFYIYFYLFHIYFCWKKKKKKKKRKKK---

---GCVTPSPVSIGGTIPPTTTGVSQVECDCCPIGQKCLLVNGHEICIKPATTGGIPELT
TGCAGTTTGRAAGHYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCLDCLDLH
CERQGDFTCFMVKNPNFISSKHSCYGESCCK
Translated Amino Acid sequence (All Frames) 
Frame A:
nnyplk**q*nrflhlflfisylfllekkekkekkkkk---

---GCVTPSPVSIGGTIPPTTTGVSQVECDCCPIGQKCLLVNGHEICIKPATTGGIPELT
TGCAGTTTGRAAGHYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCLDCLDLH
CERQGDFTCFMVKNPNFISSKHSCYGESCCK

Frame B:
iiip*NNNNKIDFYIYFYLFHIYFCWKKKKKKKKRKKK---

---vvlhhhqfqlvelslqpllvyhklsvivvqlvknvy*smvmkfvlnqqplvvfqn*l
lvvlvqqlaglqvitqnqvqvihiyvidiivkeewnvmllmvfqnvyhqttnv*iv*ifi
vrdkvispvlwlkiqisflvnivvmvnhvvn

Frame C:
*lslkiitik*iftfifiyfififvgkkrkkrkkekk---

---lcytitsfnwwnypsnhywcits*v*llsnwskmfisqws*nly*tsnhwwysriny
wlcwynnwqgcrslhriryr*stfm**isl*krngmscc*wcsrmftiklqmfrlfrssl
*etr*fhlfyg*kskfhf**t*llw*iml*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS452 (CHS452Q) /CSM/CH/CHS4-C/CHS452Q.Seq.d/                        882   0.0
SHL803 (SHL803Q) /CSM/SH/SHL8-A/SHL803Q.Seq.d/                        874   0.0
SHL783 (SHL783Q) /CSM/SH/SHL7-D/SHL783Q.Seq.d/                        874   0.0
SHL777 (SHL777Q) /CSM/SH/SHL7-D/SHL777Q.Seq.d/                        874   0.0
SHL703 (SHL703Q) /CSM/SH/SHL7-A/SHL703Q.Seq.d/                        874   0.0
SHL613 (SHL613Q) /CSM/SH/SHL6-A/SHL613Q.Seq.d/                        874   0.0
SHL602 (SHL602Q) /CSM/SH/SHL6-A/SHL602Q.Seq.d/                        874   0.0
SHL588 (SHL588Q) /CSM/SH/SHL5-D/SHL588Q.Seq.d/                        874   0.0
SHL457 (SHL457Q) /CSM/SH/SHL4-C/SHL457Q.Seq.d/                        874   0.0
SHL385 (SHL385Q) /CSM/SH/SHL3-D/SHL385Q.Seq.d/                        874   0.0
own update 2002.10. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CR385071|CR385071.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-245B7.    50   0.051  1
CR936281|CR936281.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    50   0.051  1
DT056953|DT056953.1 AGENCOURT_55789447 NICHD_XGC_FaBN Xenopus laevis cDNA clone IMAGE:8075049 3', mRNA sequence.    32   0.11   3
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    44   0.72   4
AC149417|AC149417.1 Phakopsora pachyrhizi clone JGIAFNA-77J13, complete sequence.    46   0.79   1
AC020547|AC020547.7 Homo sapiens BAC clone RP11-134F3 from 2, complete sequence.    46   0.79   1
AL161506|AL161506.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18.    42   0.90   3
CV752175|CV752175.1 SJL6-009_A06_SJL6-009A06-T3_039.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   3.1    1
CV752026|CV752026.1 SJL6-007_B08_SJL6-007B08-T3_063.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   3.1    1
CV739281|CV739281.1 SJAL_019_73.T3 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   3.1    1
dna update 2005.12. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                262   4e-69
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                165   6e-40
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa...    52   1e-05
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    42   0.011
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    41   0.024
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    41   0.024
AB011475_1(AB011475|pid:none) Arabidopsis thaliana genomic DNA, ...    37   0.27
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg...    37   0.45
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    37   0.45
BX883044_5(BX883044|pid:none) Rattus norvegicus chromosome 20, m...    34   2.3
protein update 2009. 4.13
PSORT 

 psg: 0.91  gvh: 0.42  alm: 0.47  top: 0.43  tms: 0.00  mit: 0.21  mip: 0.06
 nuc: 0.36  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for CHS452 is nuc
5' end seq. ID CHS452F
5' end seq. 
>CHS452F.Seq
AATAATTATCCCTTAAAATAATAACAATAAAATAGATTTTTACATTTATTTTTATTTATT
TCATATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAGAAAAAAAGAAAAAAAAAANNNNN
NNNNN
Length of 5' end seq. 125
3' end seq. ID CHS452Z
3' end seq. 
>CHS452Z.Seq
NNNNNNNNNNGGTTGTGTTACACCATCACCAGTTTCAATTGGTGGAACTATCCCTCCAAC
CACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATTGGTCAAAAATGTTTATT
AGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGTGGTATTCCAGAATTAAC
TACTGGTTGTGCTGGTACAACAACTGGCAGGGCTGCAGGTCATTACACAGAATCAGGTAC
AGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGAATGGAATGTCATGTTGT
TAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTAGATTGTTTAGATCTTCA
TTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCAAATTTCATTTCTAG
TAAACATAGTTGTTATGGTGAATCATGTTGTAAAT
Length of 3' end seq. 455
Connected seq. ID CHS452P
Connected seq. 
>CHS452P.Seq
AATAATTATCCCTTAAAATAATAACAATAAAATAGATTTTTACATTTATTTTTATTTATT
TCATATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAGAAAAAAAGAAAAAAAAAA-----
-----GGTTGTGTTACACCATCACCAGTTTCAATTGGTGGAACTATCCCTCCAACCACTA
CTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATTGGTCAAAAATGTTTATTAGTCA
ATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGTGGTATTCCAGAATTAACTACTG
GTTGTGCTGGTACAACAACTGGCAGGGCTGCAGGTCATTACACAGAATCAGGTACAGGTA
ATCCACATTTATGTGATAGATATCATTGTAAAAGAGGAATGGAATGTCATGTTGTTAATG
GTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTAGATTGTTTAGATCTTCATTGTG
AGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCAAATTTCATTTCTAGTAAAC
ATAGTTGTTATGGTGAATCATGTTGTAAAT
Length of connected seq. 560
Full length Seq ID -
Full length Seq. -
Length of full length seq. -