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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS451
Library CH
(Link to library)
Clone ID CHS451
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16411-1|Contig-U16470-1
Original site URL
Representative seq. ID CHS451P
(Link to Original site)
Representative DNA sequence 
>CHS451 (CHS451Q) /CSM/CH/CHS4-C/CHS451Q.Seq.d/
AATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTGTAA
ACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATATAT
TTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAACAA
ATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAGCAC
CAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATATTTG
AAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCAAAC
AACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAGTTT
TAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACCATT
TAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTGCAX
XXXXXXXXXCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGAACC
GTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATACATCCTT
GGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAAGATAAA
GTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGATGATATA
ATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAATTAAGA
TCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGATGCTTTA
GATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAACGTTAC
ATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAATTAAAAGAA
AATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATAGATTTA
AAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTAAATAAAAA
AAAATAAAAAATAATAAAATC
sequence update 2002.10.25
Translated Amino Acid sequence 
*iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTDKTN
TILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAKQ
PVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGA-
--

---LLQVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYILGEQANKEGGNNSLSQACKDK
VIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHSIITLQLRSVEKRLEDQNMSLKISNDAL
DSIINAAYDPIFGGRPLKRYIEKNIVTELSKLILGGKLKENQGVVVNEKDHHLNFDIIDL
KQQQQRPASPTKKQKTIK*kkiknnki
Translated Amino Acid sequence (All Frames) 
Frame A:
nk**lkfayikeikifyfl*tyyfl*inhiifqhtyiyiyf*nkik*kchliqknllikq
iqfc*elknwqeknqmyn*hqyiwllhy*mmkii*qnlylkklvemyqklmlvlkdy*pn
nlfkiqyhlkflqihyfykf*dqqhvikrimvili*qlti*ywdywmieiyyqywemlv-
--

---LLQVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYILGEQANKEGGNNSLSQACKDK
VIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHSIITLQLRSVEKRLEDQNMSLKISNDAL
DSIINAAYDPIFGGRPLKRYIEKNIVTELSKLILGGKLKENQGVVVNEKDHHLNFDIIDL
KQQQQRPASPTKKQKTIK*kkiknnki

Frame B:
innn*nlhi*kk*kffifckhiifck*ii*ffnihiyiyifkik*nknvi*srriy**nk
ynfvknsrigkrkikctistntfgcyiik**r*fskiyi*kswwrctkn*cwf*kiisqt
tcsksstt*nfskfiiftsfkisstsske*w*fsfss*pfnigiig**ryiisigrcwc-
--

---sykywmkvvlpmvkvep*isqmllsl*pqi*vvntslvnkqtkkvvttlyhklvkik
slmklenisvqsf*ivsmi*lsllh*vkktfivlllfn*dpskrd*kikicl*rfqtml*
iqlsmlhmiqslvvdh*nvtlkrilslnlvnsslvvn*kkikvllsmkkiiistlil*i*
nnnnnvqllqpknkkllnkkk*kiik

Frame C:
*iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTDKTN
TILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAKQ
PVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGA-
--

---ltsig*rssyrwsr*nrrflkccyhydlkfr*sihpw*tskqrrw*qlfitsl*r*s
h**s*ktfpsrvfkssr*ynclysie*rkps*yyyssikirrkeirrskyvfkdfkrcfr
fnyqcci*snlww*tietlh*keych*t**thpww*ikrksrcccq*krsssql*yyrfk
tttttssfsnqktkny*ikknkk**n
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHK241 (VHK241Q) /CSM/VH/VHK2-B/VHK241Q.Seq.d/                       1118   0.0
VHI333 (VHI333Q) /CSM/VH/VHI3-B/VHI333Q.Seq.d/                       1118   0.0
VHC167 (VHC167Q) /CSM/VH/VHC1-C/VHC167Q.Seq.d/                       1118   0.0
SLA860 (SLA860Q) /CSM/SL/SLA8-C/SLA860Q.Seq.d/                       1118   0.0
SLA449 (SLA449Q) /CSM/SL/SLA4-C/SLA449Q.Seq.d/                       1118   0.0
SHL887 (SHL887Q) /CSM/SH/SHL8-D/SHL887Q.Seq.d/                       1118   0.0
SHL827 (SHL827Q) /CSM/SH/SHL8-B/SHL827Q.Seq.d/                       1118   0.0
SHL818 (SHL818Q) /CSM/SH/SHL8-A/SHL818Q.Seq.d/                       1118   0.0
SHL678 (SHL678Q) /CSM/SH/SHL6-D/SHL678Q.Seq.d/                       1118   0.0
SHL672 (SHL672Q) /CSM/SH/SHL6-C/SHL672Q.Seq.d/                       1118   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE017152|AE017152.1 Haemophilus ducreyi strain 35000HP section 2 of 6 of the complete genome.    50   6e-06  2
BA000028|BA000028.3 Oceanobacillus iheyensis HTE831 DNA, complete genome.    58   4e-04  1
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    36   0.003  13
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           36   0.020  15
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            36   0.033  16
AP003494|AP003494.1 Homo sapiens genomic DNA, chromosome 8q23, clone: KB1700D9.    38   0.064  6
AC105301|AC105301.44 Mus musculus clone rp23-317h14 map 17 strain C57BL/6J, complete sequence.    46   0.068  5
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.    36   0.069  11
AC167333|AC167333.1 Mus musculus chromosome 5 clone RP23-92L4, WORKING DRAFT SEQUENCE, 3 unordered pieces.    50   0.11   1
AC158438|AC158438.2 Atelerix albiventris clone LB4-205P18, WORKING DRAFT SEQUENCE, 4 ordered pieces.    50   0.11   1
dna update 2005.12. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970534_1(AJ970534|pid:none) Triticum turgidum subsp. durum par...   175   3e-42
AJ970533_1(AJ970533|pid:none) Triticum turgidum subsp. durum par...   174   5e-42
(Q6F2Y7) RecName: Full=Heat shock protein 101;  &AC130611_3(AC13...   174   5e-42
AF097363_1(AF097363|pid:none) Triticum aestivum heat shock prote...   174   7e-42
AJ970535_1(AJ970535|pid:none) Triticum turgidum subsp. durum par...   172   1e-41
AY764155_1(AY764155|pid:none) Vitis vinifera heat shock protein ...   172   2e-41
AF083327_1(AF083327|pid:none) Zea mays 101 kDa heat shock protei...   172   2e-41
BT066296_1(BT066296|pid:none) Zea mays full-length cDNA clone ZM...   172   2e-41
AF174433_1(AF174433|pid:none) Triticum aestivum heat shock prote...   172   2e-41
AJ970536_1(AJ970536|pid:none) Triticum turgidum subsp. durum par...   170   7e-41
protein update 2009. 4.13
PSORT 

 psg: 0.63  gvh: 0.36  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHS451 is cyt
5' end seq. ID CHS451F
5' end seq. 
>CHS451F.Seq
AATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTGTAA
ACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATATAT
TTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAACAA
ATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAGCAC
CAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATATTTG
AAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCAAAC
AACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAGTTT
TAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACCATT
TAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTGCAN
NNNNNNNNN
Length of 5' end seq. 549
3' end seq. ID CHS451Z
3' end seq. 
>CHS451Z.Seq
NNNNNNNNNNCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGAAC
CGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATACATCCT
TGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAAGATAA
AGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGATGATAT
AATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAATTAAG
ATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGATGCTTT
AGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAACGTTA
CATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAATTAAAAGA
AAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATAGATTT
AAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTAAATAAAA
AAAAATAAAAAATAATAAAATC
Length of 3' end seq. 622
Connected seq. ID CHS451P
Connected seq. 
>CHS451P.Seq
AATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTGTAA
ACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATATAT
TTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAACAA
ATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAGCAC
CAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATATTTG
AAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCAAAC
AACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAGTTT
TAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACCATT
TAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTGCA-
---------CTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGAACC
GTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATACATCCTT
GGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAAGATAAA
GTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGATGATATA
ATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAATTAAGA
TCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGATGCTTTA
GATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAACGTTAC
ATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAATTAAAAGAA
AATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATAGATTTA
AAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTAAATAAAAA
AAAATAAAAAATAATAAAATC
Length of connected seq. 1151
Full length Seq ID -
Full length Seq. -
Length of full length seq. -