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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS450
Library CH
(Link to library)
Clone ID CHS450
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15648-1
Original site URL
Representative seq. ID CHS450P
(Link to Original site)
Representative DNA sequence 
>CHS450 (CHS450Q) /CSM/CH/CHS4-C/CHS450Q.Seq.d/
AATTTACATTTATTATTCTTCTTACAAATTATCAAATATAGAAAAAAAAAAATAATAATA
ATAATATATAACTTACTATAGAAATAAAAANCATTTCAAAAAATAAATTTCTTAAGGAGG
AANCCANGGNTAAAAAAAAAAXXXXXXXXXXCATTAGAGANCCCCTCCCCACATAATCAN
GCCGGTGTTTTAATGATTTCACAAAGTGGTGAAACTAAAGATGTTGCACGTATCCTAACA
TTGGCTGAAGAGTCGGGTATTCCAAGATTCTCAATTGTAAATGCCGTTGGTTCATTGATT
GCAAGAAGTTCAATTTGTGGTGTCTATTTAAATGCAGGTCGTGAACATGCTGTAGCTTCA
ACCAAAGCATTCTCATCACAAGTTACAGTATTATCATTGGTTGCAAATTGGTTCGCTCAA
CATAGAGGCATCGAAGAGGGTAAAAGACGTCAGTTAATCGATTCTCTTCATCGTTTACCA
ACAAATTTGGGTATGGCATTACGTGTTCGTGAACAATGTAAAGCAATCGCTCAAAAAATT
TATAAAAAGAATTCAATCTTTGTTTTGGGTAAAGGTTTCGCTGAACCAATCGCATTTGAA
GGTGCTTTGAAAATTAAAGAAATCACCTATTGTCATGCTGAAGGTTATAGTGGTGGTGCT
CTTAAACATGGTCCATTCGCTCTCATTGAACAAGATACACCAATTATCTTGA
sequence update 2002.10.25
Translated Amino Acid sequence 
ftfiilltnyqi*kkknnnnni*LTIEIKXISKNKFLKEEXXXKKK---

---LEXPSPHNXAGVLMISQSGETKDVARILTLAEESGIPRFSIVNAVGSLIARSSICGV
YLNAGREHAVASTKAFSSQVTVLSLVANWFAQHRGIEEGKRRQLIDSLHRLPTNLGMALR
VREQCKAIAQKIYKKNSIFVLGKGFAEPIAFEGALKIKEITYCHAEGYSGGALKHGPFAL
IEQDTPIIL
Translated Amino Acid sequence (All Frames) 
Frame A:
nlhllfflqiikyrkkkiiiiiynll*k*kxfqkinflrrxpxxkkk---

---h*rxpphiixpvf**fhkvvklkmlhvs*hwlksrvfqdsql*mplvh*lqevqfvv
si*mqvvnml*lqpkhshhklqyyhwlqigslnieaskrvkdvs*silfivyqqiwvwhy
vfvnnvkqslkkfikriqslfwvkvslnqshlkvl*klkkspivmlkvivvvllnmvhsl
slnkihqls*

Frame B:
iyiyyssyklsniekkk****yityyrnkxhfkk*is*ggxxg*kk---

---irxplpt*sxrcfndftkw*n*rcctypnig*rvgyskilnckcrwfidckkfnlwc
lfkcrs*tccsfnqsilitsysiiigcklvrst*rhrrg*ktsvnrfsssftnkfgygit
cs*tm*snrsknl*kefnlcfg*rfr*tnri*rcfen*rnhllsc*rl*wwcs*twsirs
h*trytnyl

Frame C:
ftfiilltnyqi*kkknnnnni*LTIEIKXISKNKFLKEEXXXKKK---

---LEXPSPHNXAGVLMISQSGETKDVARILTLAEESGIPRFSIVNAVGSLIARSSICGV
YLNAGREHAVASTKAFSSQVTVLSLVANWFAQHRGIEEGKRRQLIDSLHRLPTNLGMALR
VREQCKAIAQKIYKKNSIFVLGKGFAEPIAFEGALKIKEITYCHAEGYSGGALKHGPFAL
IEQDTPIIL
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS450 (CHS450Q) /CSM/CH/CHS4-C/CHS450Q.Seq.d/                       1100   0.0
VFD470 (VFD470Q) /CSM/VF/VFD4-C/VFD470Q.Seq.d/                       1076   0.0
VHB294 (VHB294Q) /CSM/VH/VHB2-D/VHB294Q.Seq.d/                       1074   0.0
CFC248 (CFC248Q) /CSM/CF/CFC2-B/CFC248Q.Seq.d/                       1019   0.0
SLH483 (SLH483Q) /CSM/SL/SLH4-D/SLH483Q.Seq.d/                       1003   0.0
SHF238 (SHF238Q) /CSM/SH/SHF2-B/SHF238Q.Seq.d/                        926   0.0
CHH213 (CHH213Q) /CSM/CH/CHH2-A/CHH213Q.Seq.d/                        916   0.0
AFK688 (AFK688Q) /CSM/AF/AFK6-D/AFK688Q.Seq.d/                        912   0.0
CHM485 (CHM485Q) /CSM/CH/CHM4-D/CHM485Q.Seq.d/                        904   0.0
AHI495 (AHI495Q) /CSM/AH/AHI4-D/AHI495Q.Seq.d/                        902   0.0
own update 2002.10. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF310886|AF310886.1 Dictyostelium discoideum RacA (racA) gene, complete cds.    82   4e-13  2
AX829304|AX829304.1 Sequence 24 from Patent WO03072602.            40   0.027  2
AX818274|AX818274.1 Sequence 24 from Patent EP1338608.             40   0.027  2
AX594548|AX594548.1 Sequence 202 from Patent EP1258494.            40   0.027  2
AY144933|AY144933.1 Saccharomyces castellii clone Contig2017 GFA1 gene, complete cds.    40   0.030  2
Z28104|Z28104.1 S.cerevisiae chromosome XI reading frame ORF YKL104c.    40   0.047  2
BX957223|BX957223.1 Methanococcus maripaludis S2 complete genome; segment 5/5.    50   0.064  1
BI746638|BI746638.1 rm29g07.y1 Meloidogyne arenaria egg pAMP1 v1 Chiapelli McCarter Meloidogyne arenaria cDNA 5' similar to TR:Q19130 Q19130 F07A11.2 PROTEIN. [1] ;, mRNA sequence.    36   0.11   2
BM169673|BM169673.1 EST572196 PyBS Plasmodium yoelii yoelii cDNA clone PYCPU83 5' end, mRNA sequence.    36   0.19   2
AJ723845|AJ723845.1 Gallus gallus EST, clone 26h2s7.               46   1.0    1
dna update 2005.12. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM910988_95(AM910988|pid:none) Plasmodium knowlesi strain H chro...   169   6e-41
CP000112_502(CP000112|pid:none) Desulfovibrio desulfuricans G20,...   154   3e-36
CP000777_489(CP000777|pid:none) Leptospira biflexa serovar Patoc...   149   1e-34
CP001101_96(CP001101|pid:none) Chlorobium phaeobacteroides BS1, ...   148   2e-34
CP001097_87(CP001097|pid:none) Chlorobium limicola DSM 245, comp...   146   5e-34
(Q8KG38) RecName: Full=Glucosamine--fructose-6-phosphate aminotr...   146   7e-34
CP000108_5(CP000108|pid:none) Chlorobium chlorochromatii CaD3, c...   145   1e-33
CP000607_136(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2...   145   1e-33
CP001102_1266(CP001102|pid:none) Candidatus Amoebophilus asiatic...   143   6e-33
CP000159_1329(CP000159|pid:none) Salinibacter ruber DSM 13855, c...   142   7e-33
protein update 2009. 4.13
PSORT 

 psg: 0.42  gvh: 0.46  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHS450 is nuc
5' end seq. ID CHS450F
5' end seq. 
>CHS450F.Seq
AATTTACATTTATTATTCTTCTTACAAATTATCAAATATAGAAAAAAAAAAATAATAATA
ATAATATATAACTTACTATAGAAATAAAAANCATTTCAAAAAATAAATTTCTTAAGGAGG
AANCCANGGNTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 151
3' end seq. ID CHS450Z
3' end seq. 
>CHS450Z.Seq
NNNNNNNNNNCATTAGAGANCCCCTCCCCACATAATCANGCCGGTGTTTTAATGATTTCA
CAAAGTGGTGAAACTAAAGATGTTGCACGTATCCTAACATTGGCTGAAGAGTCGGGTATT
CCAAGATTCTCAATTGTAAATGCCGTTGGTTCATTGATTGCAAGAAGTTCAATTTGTGGT
GTCTATTTAAATGCAGGTCGTGAACATGCTGTAGCTTCAACCAAAGCATTCTCATCACAA
GTTACAGTATTATCATTGGTTGCAAATTGGTTCGCTCAACATAGAGGCATCGAAGAGGGT
AAAAGACGTCAGTTAATCGATTCTCTTCATCGTTTACCAACAAATTTGGGTATGGCATTA
CGTGTTCGTGAACAATGTAAAGCAATCGCTCAAAAAATTTATAAAAAGAATTCAATCTTT
GTTTTGGGTAAAGGTTTCGCTGAACCAATCGCATTTGAAGGTGCTTTGAAAATTAAAGAA
ATCACCTATTGTCATGCTGAAGGTTATAGTGGTGGTGCTCTTAAACATGGTCCATTCGCT
CTCATTGAACAAGATACACCAATTATCTTGA
Length of 3' end seq. 571
Connected seq. ID CHS450P
Connected seq. 
>CHS450P.Seq
AATTTACATTTATTATTCTTCTTACAAATTATCAAATATAGAAAAAAAAAAATAATAATA
ATAATATATAACTTACTATAGAAATAAAAANCATTTCAAAAAATAAATTTCTTAAGGAGG
AANCCANGGNTAAAAAAAAAA----------CATTAGAGANCCCCTCCCCACATAATCAN
GCCGGTGTTTTAATGATTTCACAAAGTGGTGAAACTAAAGATGTTGCACGTATCCTAACA
TTGGCTGAAGAGTCGGGTATTCCAAGATTCTCAATTGTAAATGCCGTTGGTTCATTGATT
GCAAGAAGTTCAATTTGTGGTGTCTATTTAAATGCAGGTCGTGAACATGCTGTAGCTTCA
ACCAAAGCATTCTCATCACAAGTTACAGTATTATCATTGGTTGCAAATTGGTTCGCTCAA
CATAGAGGCATCGAAGAGGGTAAAAGACGTCAGTTAATCGATTCTCTTCATCGTTTACCA
ACAAATTTGGGTATGGCATTACGTGTTCGTGAACAATGTAAAGCAATCGCTCAAAAAATT
TATAAAAAGAATTCAATCTTTGTTTTGGGTAAAGGTTTCGCTGAACCAATCGCATTTGAA
GGTGCTTTGAAAATTAAAGAAATCACCTATTGTCATGCTGAAGGTTATAGTGGTGGTGCT
CTTAAACATGGTCCATTCGCTCTCATTGAACAAGATACACCAATTATCTTGA
Length of connected seq. 702
Full length Seq ID -
Full length Seq. -
Length of full length seq. -