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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS447
Library CH
(Link to library)
Clone ID CHS447
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHS447 (CHS447Q) /CSM/CH/CHS4-B/CHS447Q.Seq.d/
XXXXXXXXXXTGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAG
AAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAA
CTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAG
CTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAAC
ATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGG
ACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTAC
AACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAA
CAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAG
ATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTG
AAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAG
ATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCNATTAAAAA
ATATTCNACATGAACAACAAATCCAAGAACAACAAGATTAATTAAATCAAGAAAAAAATC
AACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTCTTTCTTTTTAAAAA
ACT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---EEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQA
QHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQ
QLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVE
KAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNXLKNIXHEQQIQEQQD*lnqeknq
qlleqeqnqk*fnhsfflkn
Translated Amino Acid sequence (All Frames) 
Frame A:
---EEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQA
QHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQ
QLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVE
KAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNXLKNIXHEQQIQEQQD*lnqeknq
qlleqeqnqk*fnhsfflkn


Frame B:
---kkfiipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkmplnkl
niynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiyn
nlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlk
klnlnwmlnwlkiinkrikmri*fkrnnnlltklkix*kifxmnnksknnkin*ikkkin
ny*nknkiknnliilsf*kt


Frame C:
---rns*fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trch*tss
tftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kftt
t**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrercclle*c*k
sst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprttrliksrkkst
iirtrtkskii*sfflfkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        739   0.0
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        739   0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        739   0.0
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/                        739   0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        739   0.0
SHL751 (SHL751Q) /CSM/SH/SHL7-C/SHL751Q.Seq.d/                        739   0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        739   0.0
SHL708 (SHL708Q) /CSM/SH/SHL7-A/SHL708Q.Seq.d/                        739   0.0
SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/                        739   0.0
SHL645 (SHL645Q) /CSM/SH/SHL6-B/SHL645Q.Seq.d/                        739   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   739   0.0    4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   0.032  13
AC112323|AC112323.5 Rattus norvegicus clone CH230-172G11, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    50   0.071  1
AC110930|AC110930.4 Rattus norvegicus clone CH230-215F2, *** SEQUENCING IN PROGRESS ***, 68 unordered pieces.    50   0.071  1
AC095086|AC095086.6 Rattus norvegicus clone CH230-7A16, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    50   0.071  1
AC165111|AC165111.1 Bos taurus clone CH240-164H19, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces.    42   0.20   3
AE017332|AE017332.1 Mycoplasma hyopneumoniae 232, complete genome.    38   0.20   14
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   0.20   10
AE017243|AE017243.1 Mycoplasma hyopneumoniae J, complete genome.    36   0.26   12
dna update 2005.12. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   288   1e-76
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    38   0.31
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.40
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    37   0.52
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    37   0.68
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr...    36   1.5
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   1.5
AL035475_17(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    35   2.0
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   2.0
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   2.0
protein update 2009. 5.21
PSORT 

 psg: 0.75  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for CHS447 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHS447Z
3' end seq. 
>CHS447Z.Seq
NNNNNNNNNNTGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAG
AAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAA
CTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAG
CTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAAC
ATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGG
ACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTAC
AACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAA
CAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAG
ATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTG
AAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAG
ATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCNATTAAAAA
ATATTCNACATGAACAACAAATCCAAGAACAACAAGATTAATTAAATCAAGAAAAAAATC
AACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTCTTTCTTTTTAAAAA
ACT
Length of 3' end seq. 783
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -