>CHS442 (CHS442Q) /CSM/CH/CHS4-B/CHS442Q.Seq.d/
XXXXXXXXXXAACTCAGACTCTGACCAACTTGATGTCGAGCTTCAACCAGTTGTCAAATC
AATTACTCAATCACAAACCTCTGGATCAACTGTGACAATTAAAGGTTCATTCTTTAATAA
AAAGGACACTGGTTTGAAAATTATGGTTGGAAATCATTCATGTGATTCTTTGACTATTGT
AGATACCCAAACACTTACTTGCTCTGCTCCACCAGGAAGTGGTATTAAAAATGCTGTTTC
ATTCATGGTTAAAGATGCTGAATCAAAATTATCACCACCATTGTTTTTAGATTATAGTCC
ACCAACCATTATGTCATCAACAAGTGTAAAACAAGTTGAAGGTGGTCAAGTTACTATTTA
TGGTACCAATTTTGAAAATACTTTGATTACAGTAAATGTTGGAAGTAAATCATGTGAAGA
TGTTTCTGTAATAGATTCAACCAAACTTACTTGTTCAATTTCAAAATCAACAATAGATCC
TTCATTAACAAATAAGAAATTGGCCGTAAATGTTACTGTAAATGGTCAATCTGCTAATGG
TGAAGTATTTGAATATGATAATGAAGCACTCAATACTGAAACTCCTAAACCAACATTAGC
ACCAACTATAAAACCAACTGAAAAACCAACTGAAAAACCAACTGAAAAACCAACAACATC
TCCAATAGATAAACACATTGAAAATAGTTCTTCTAAAATTTCTAATTCATTAATTTTATT
TTCTCATATATACNATCCAAANATTAAAAAA

---SDSDQLDVELQPVVKSITQSQTSGSTVTIKGSFFNKKDTGLKIMVGNHSCDSLTIVD
TQTLTCSAPPGSGIKNAVSFMVKDAESKLSPPLFLDYSPPTIMSSTSVKQVEGGQVTIYG
TNFENTLITVNVGSKSCEDVSVIDSTKLTCSISKSTIDPSLTNKKLAVNVTVNGQSANGE
VFEYDNEALNTETPKPTLAPTIKPTEKPTEKPTEKPTTSPIDKHIENSSSKISNSLILFS
HIYXPXIKK

Frame A:
---tqtltnlmssfnqlsnqllnhkpldql*qlkvhslikrtlv*klwleiihvil*ll*
ipkhllallhqevvlkmlfhswlkmlnqnyhhhcf*iivhqplchqqv*nklkvvkllfm
vpilkil*lq*mlevnhvkmfl**iqpnllvqfqnqq*ilh*qirnwp*mll*mvnllmv
kylnmimkhsilkllnqh*hql*nqlknqlknqlknqqhlq*intlkivllkflih*fyf
liytiqxlk


Frame B:
---lrl*pt*crastscqinysitnlwincdn*rfil**kghwfenygwksfm*ffdycr
ypntyllcstrkwy*kccfihg*rc*ikiittivfrl*stnhyvinkckts*rwssyylw
yqf*kyfdyskcwk*im*rcfcnrfnqtylfnfkinnrsfink*eigrkcyckwsic*w*
si*i***stqy*ns*tnistnyktn*ktn*ktn*ktnnisnr*th*k*ff*nf*finfif
syixskx*k


Frame C:
---SDSDQLDVELQPVVKSITQSQTSGSTVTIKGSFFNKKDTGLKIMVGNHSCDSLTIVD
TQTLTCSAPPGSGIKNAVSFMVKDAESKLSPPLFLDYSPPTIMSSTSVKQVEGGQVTIYG
TNFENTLITVNVGSKSCEDVSVIDSTKLTCSISKSTIDPSLTNKKLAVNVTVNGQSANGE
VFEYDNEALNTETPKPTLAPTIKPTEKPTEKPTEKPTTSPIDKHIENSSSKISNSLILFS
HIYXPXIKK

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL869 (SHL869Q) /CSM/SH/SHL8-C/SHL869Q.Seq.d/                       1185   0.0
SHK779 (SHK779Q) /CSM/SH/SHK7-D/SHK779Q.Seq.d/                       1185   0.0
SHK674 (SHK674Q) /CSM/SH/SHK6-D/SHK674Q.Seq.d/                       1185   0.0
SHK612 (SHK612Q) /CSM/SH/SHK6-A/SHK612Q.Seq.d/                       1185   0.0
SHK454 (SHK454Q) /CSM/SH/SHK4-C/SHK454Q.Seq.d/                       1185   0.0
SHK336 (SHK336Q) /CSM/SH/SHK3-B/SHK336Q.Seq.d/                       1185   0.0
SHG859 (SHG859Q) /CSM/SH/SHG8-C/SHG859Q.Seq.d/                       1185   0.0
SHG695 (SHG695Q) /CSM/SH/SHG6-D/SHG695Q.Seq.d/                       1185   0.0
SHG451 (SHG451Q) /CSM/SH/SHG4-C/SHG451Q.Seq.d/                       1185   0.0
SHG394 (SHG394Q) /CSM/SH/SHG3-D/SHG394Q.Seq.d/                       1185   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BH148791|BH148791.1 ENTPI47TR Entamoeba histolytica Sheared DNA Entamoeba histolyticagenomic, genomic survey sequence.    48   0.27   1
BH133986|BH133986.1 ENTOC90TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   0.27   1
AZ679166|AZ679166.1 ENTKM96TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   0.27   1
AZ531057|AZ531057.1 ENTBC39TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   0.27   1
AZ531674|AZ531674.1 ENTBT90TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   0.27   1
AZ546190|AZ546190.1 ENTES70TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   0.27   1
AZ676969|AZ676969.1 ENTMC08TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    34   0.73   2
AW375848|AW375848.1 RC3-CT0197-220999-022-A10 CT0197 Homo sapiens cDNA, mRNA sequence.    40   1.3    2
AC006376|AC006376.2 Homo sapiens BAC clone RP11-386L3 from Y, complete sequence.    38   1.3    7
AY954957|AY954957.1 Bacteriophage 47, complete genome.             38   1.9    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117076_23(AC117076|pid:none) Dictyostelium discoideum chromoso...    90   6e-17
AC115598_15(AC115598|pid:none) Dictyostelium discoideum chromoso...    71   4e-11
AC116100_1(AC116100|pid:none) Dictyostelium discoideum chromosom...    69   1e-10
FJ374909_1(FJ374909|pid:none) Dictyostelium discoideum strain QS...    62   2e-08
(Q06885) RecName: Full=Glycoprotein gp100; AltName: Full=P29F8; ...    60   5e-08
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso...    60   5e-08
FJ374921_1(FJ374921|pid:none) Dictyostelium discoideum strain QS...    60   9e-08
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...    59   1e-07
FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX...    59   2e-07
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS...    58   4e-07

 psg: 0.75  gvh: 0.40  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHS442 is cyt

>CHS442Z.Seq
NNNNNNNNNNAACTCAGACTCTGACCAACTTGATGTCGAGCTTCAACCAGTTGTCAAATC
AATTACTCAATCACAAACCTCTGGATCAACTGTGACAATTAAAGGTTCATTCTTTAATAA
AAAGGACACTGGTTTGAAAATTATGGTTGGAAATCATTCATGTGATTCTTTGACTATTGT
AGATACCCAAACACTTACTTGCTCTGCTCCACCAGGAAGTGGTATTAAAAATGCTGTTTC
ATTCATGGTTAAAGATGCTGAATCAAAATTATCACCACCATTGTTTTTAGATTATAGTCC
ACCAACCATTATGTCATCAACAAGTGTAAAACAAGTTGAAGGTGGTCAAGTTACTATTTA
TGGTACCAATTTTGAAAATACTTTGATTACAGTAAATGTTGGAAGTAAATCATGTGAAGA
TGTTTCTGTAATAGATTCAACCAAACTTACTTGTTCAATTTCAAAATCAACAATAGATCC
TTCATTAACAAATAAGAAATTGGCCGTAAATGTTACTGTAAATGGTCAATCTGCTAATGG
TGAAGTATTTGAATATGATAATGAAGCACTCAATACTGAAACTCCTAAACCAACATTAGC
ACCAACTATAAAACCAACTGAAAAACCAACTGAAAAACCAACTGAAAAACCAACAACATC
TCCAATAGATAAACACATTGAAAATAGTTCTTCTAAAATTTCTAATTCATTAATTTTATT
TTCTCATATATACNATCCAAANATTAAAAAA