NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS440
Library CH
(Link to library)
Clone ID CHS440
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15613-1
Original site URL
Representative seq. ID CHS440P
(Link to Original site)
Representative DNA sequence 
>CHS440 (CHS440Q) /CSM/CH/CHS4-B/CHS440Q.Seq.d/
ACTATTAAAAATATATATATTATAATTGTCAATTTTTATTCGTATAATTTATTTGTTTAT
ATATTATTAATTATTAAAAAAAATAATAATTTATTTGTTTATATATTAATAATAATAATA
AAAAAAAAAXXXXXXXXXXCAAATCCAATCAATGATCATGGTCCAAGTATTATCGCTCAT
CATTCAACCGTTGAAATTAGAAAAACTAAATTGATTAGTACAAATCCATCAATAACAAGT
GAATTCCCATACATTGTTTCAAATTATGCTAGTGTTCGAGTCCAAGAGATAACATTATCA
CCAACTACTCAATTACCATTCAAATGTGATAGTTCCTTAATTTTATTTGATTATGCCTCA
AGTATAAATGCATCTTTGTTTGTTTGTAATAATATTCATGGAGATGCTTATAATAGTACC
TATGCAAATATTGTCTCTGGTAATGATATCAATTCATTCTCTTGTGAAATCATTCAATTC
GATCCAAATATTCAACCACCATCTAGATCAACTCCAAATATAGTCTGTTCAAATGAATCT
CATCATACCTATAAATATGATTTTAGATTAACAAAAGCCATCATTGCTGTCATTGTCATT
GCTTGTACTTTCCTCACTTTAATTCCTGTGGTTTTATTAGCAAATAAAATTTATAAAAAT
CTTT
sequence update 2002.10.25
Translated Amino Acid sequence 
TIKNIYIIIVNFYSYNLFVYILLIIKKNNNLFVYILIIIIKKK---

---NPINDHGPSIIAHHSTVEIRKTKLISTNPSITSEFPYIVSNYASVRVQEITLSPTTQ
LPFKCDSSLILFDYASSINASLFVCNNIHGDAYNSTYANIVSGNDINSFSCEIIQFDPNI
QPPSRSTPNIVCSNESHHTYKYDFRLTKAIIAVIVIACTFLTLIPVVLLANKIYKNL
Translated Amino Acid sequence (All Frames) 
Frame A:
TIKNIYIIIVNFYSYNLFVYILLIIKKNNNLFVYILIIIIKKK---

---qiqsmimvqvlsliiqplklekln*lvqihq*qvnshtlfqimlvfeskr*hyhqll
nyhsnvivp*fylimpqv*mhlclfviifmemliivpmqilslvmisihslvksfnsiqi
fnhhldqlqi*svqmnliipinmild*qkpsllslsllvlssl*flwfy*qikfikif

Frame B:
llkiyil*lsifiriiylfiyy*llkkiiiylfiy*****kk---

---ksnq*swskyyrssfnr*n*kn*id*yksinnk*ipihcfklc*cssprdniitnys
itiqm**flnfi*lclkykcifvcl**yswrcl**ylckyclw**yqfill*nhsirsky
stti*inskyslfk*issyl*i*f*inkshhcchchclyfphfnscgfisk*nl*ks

Frame C:
y*kyiyyncqflfv*ficlyiiny*kk**ficlyinnnnkkk---

---NPINDHGPSIIAHHSTVEIRKTKLISTNPSITSEFPYIVSNYASVRVQEITLSPTTQ
LPFKCDSSLILFDYASSINASLFVCNNIHGDAYNSTYANIVSGNDINSFSCEIIQFDPNI
QPPSRSTPNIVCSNESHHTYKYDFRLTKAIIAVIVIACTFLTLIPVVLLANKIYKNL
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS440 (CHS440Q) /CSM/CH/CHS4-B/CHS440Q.Seq.d/                       1041   0.0
CHI686 (CHI686Q) /CSM/CH/CHI6-D/CHI686Q.Seq.d/                       1041   0.0
CHI179 (CHI179Q) /CSM/CH/CHI1-D/CHI179Q.Seq.d/                       1041   0.0
CHG416 (CHG416Q) /CSM/CH/CHG4-A/CHG416Q.Seq.d/                       1041   0.0
AHQ713 (AHQ713Q) /CSM/AH/AHQ7-A/AHQ713Q.Seq.d/                       1041   0.0
AHQ688 (AHQ688Q) /CSM/AH/AHQ6-D/AHQ688Q.Seq.d/                       1041   0.0
AHO766 (AHO766Q) /CSM/AH/AHO7-C/AHO766Q.Seq.d/                       1041   0.0
AHO509 (AHO509Q) /CSM/AH/AHO5-A/AHO509Q.Seq.d/                       1041   0.0
AHN567 (AHN567Q) /CSM/AH/AHN5-C/AHN567Q.Seq.d/                       1041   0.0
AHM542 (AHM542Q) /CSM/AH/AHM5-B/AHM542Q.Seq.d/                       1041   0.0
own update 2002.10. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC005323|AC005323.1 Homo sapiens chromosome 17, clone hRPK.799_N_11, complete sequence.    50   0.060  1
AC073888|AC073888.2 Homo sapiens chromosome 6 clone RP11-124N8, WORKING DRAFT SEQUENCE, 16 unordered pieces.    48   0.24   1
B31392|B31392.1 HS-1008-B2-B01-MF.abi CIT Human Genomic Sperm Library C Homo sapiens genomic clone Plate=CT 330 Col=2 Row=D, genomic survey sequence.    48   0.24   1
AQ429355|AQ429355.1 CITBI-E1-2560K19.TF CITBI-E1 Homo sapiens genomic clone 2560K19, genomic survey sequence.    48   0.24   1
AL359633|AL359633.15 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-795J1.    48   0.24   1
BX530027|BX530027.11 Zebrafish DNA sequence from clone DKEYP-81G7 in linkage group 2.    40   0.68   6
AC170686|AC170686.1 Bos taurus clone CH240-218K8, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces.    46   0.93   1
BZ497583|BZ497583.1 BONEZ21TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONEZ21, DNA sequence.    46   0.93   1
AC103672|AC103672.7 Mus musculus chromosome 15, clone RP24-351G3, complete sequence.    46   0.93   1
AL331402|AL331402.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 021C14 of library A from Tetraodon nigroviridis.    32   2.4    2
dna update 2005.12. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U48717_1(U48717|pid:none) Cryptosporidium parvum zinc finger pro...    35   1.9
AJ720220_1(AJ720220|pid:none) Gallus gallus mRNA for hypothetica...    33   5.5
EF502054_1(EF502054|pid:none) Anas platyrhynchos prolactin recep...    33   7.2
EF502053_1(EF502053|pid:none) Anas platyrhynchos prolactin recep...    33   7.2
protein update 2008.11.10
PSORT 

 psg: 0.97  gvh: 0.20  alm: 0.15  top: 0.53  tms: 0.20  mit: 0.30  mip: 0.15
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: plasma membrane
	 24.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: cytoplasmic
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for CHS440 is pla
5' end seq. ID CHS440F
5' end seq. 
>CHS440F.Seq
ACTATTAAAAATATATATATTATAATTGTCAATTTTTATTCGTATAATTTATTTGTTTAT
ATATTATTAATTATTAAAAAAAATAATAATTTATTTGTTTATATATTAATAATAATAATA
AAAAAAAAANNNNNNNNNN
Length of 5' end seq. 139
3' end seq. ID CHS440Z
3' end seq. 
>CHS440Z.Seq
NNNNNNNNNNCAAATCCAATCAATGATCATGGTCCAAGTATTATCGCTCATCATTCAACC
GTTGAAATTAGAAAAACTAAATTGATTAGTACAAATCCATCAATAACAAGTGAATTCCCA
TACATTGTTTCAAATTATGCTAGTGTTCGAGTCCAAGAGATAACATTATCACCAACTACT
CAATTACCATTCAAATGTGATAGTTCCTTAATTTTATTTGATTATGCCTCAAGTATAAAT
GCATCTTTGTTTGTTTGTAATAATATTCATGGAGATGCTTATAATAGTACCTATGCAAAT
ATTGTCTCTGGTAATGATATCAATTCATTCTCTTGTGAAATCATTCAATTCGATCCAAAT
ATTCAACCACCATCTAGATCAACTCCAAATATAGTCTGTTCAAATGAATCTCATCATACC
TATAAATATGATTTTAGATTAACAAAAGCCATCATTGCTGTCATTGTCATTGCTTGTACT
TTCCTCACTTTAATTCCTGTGGTTTTATTAGCAAATAAAATTTATAAAAATCTTT
Length of 3' end seq. 535
Connected seq. ID CHS440P
Connected seq. 
>CHS440P.Seq
ACTATTAAAAATATATATATTATAATTGTCAATTTTTATTCGTATAATTTATTTGTTTAT
ATATTATTAATTATTAAAAAAAATAATAATTTATTTGTTTATATATTAATAATAATAATA
AAAAAAAAA----------CAAATCCAATCAATGATCATGGTCCAAGTATTATCGCTCAT
CATTCAACCGTTGAAATTAGAAAAACTAAATTGATTAGTACAAATCCATCAATAACAAGT
GAATTCCCATACATTGTTTCAAATTATGCTAGTGTTCGAGTCCAAGAGATAACATTATCA
CCAACTACTCAATTACCATTCAAATGTGATAGTTCCTTAATTTTATTTGATTATGCCTCA
AGTATAAATGCATCTTTGTTTGTTTGTAATAATATTCATGGAGATGCTTATAATAGTACC
TATGCAAATATTGTCTCTGGTAATGATATCAATTCATTCTCTTGTGAAATCATTCAATTC
GATCCAAATATTCAACCACCATCTAGATCAACTCCAAATATAGTCTGTTCAAATGAATCT
CATCATACCTATAAATATGATTTTAGATTAACAAAAGCCATCATTGCTGTCATTGTCATT
GCTTGTACTTTCCTCACTTTAATTCCTGTGGTTTTATTAGCAAATAAAATTTATAAAAAT
CTTT
Length of connected seq. 654
Full length Seq ID -
Full length Seq. -
Length of full length seq. -