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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS439
Library CH
(Link to library)
Clone ID CHS439
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CHS439P
(Link to Original site)
Representative DNA sequence 
>CHS439 (CHS439Q) /CSM/CH/CHS4-B/CHS439Q.Seq.d/
TGGCCTACTGGTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATA
GAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXXXACC
TGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTAC
CAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGA
TATCGGTGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGA
TGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGA
AGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACA
ACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAA
AGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAA
CGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGC
TAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCC
TGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACA
AGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATA
ATTTAATCATTCTTNCTTTTTAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
gllvsnnyfffsfflkfk**k**KLILKKRNVKKK---

---PAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIGEYEAAQHEVAFLDE
NEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIV
EQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEK
QQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhsxflk
Translated Amino Acid sequence (All Frames) 
Frame A:
wptgik*lfflfflfkv*iieiikinikkker*kk---

---tcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*
k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr
*tt*syqrisktrstketknstrercclle*c*ksst*igc*ig*k**tresr*efssre
ttis*pn*ksikkyst*ttnprttr*iksrkkstiirtrtkskii*sfxlfkk

Frame B:
gllvsnnyfffsfflkfk**k**KLILKKRNVKKK---

---PAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIGEYEAAQHEVAFLDE
NEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIV
EQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEK
QQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhsxflk

Frame C:
aywyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---ll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkisvsmklpnmklpf*mk
mnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnksl
nnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrn
nnlltklkin*kifnmnnksknnkin*ikkkinny*nknkiknnliilxf*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI803 (SLI803Q) /CSM/SL/SLI8-A/SLI803Q.Seq.d/                        662   0.0
SLI655 (SLI655Q) /CSM/SL/SLI6-C/SLI655Q.Seq.d/                        662   0.0
SLH374 (SLH374Q) /CSM/SL/SLH3-D/SLH374Q.Seq.d/                        662   0.0
SLH142 (SLH142Q) /CSM/SL/SLH1-B/SLH142Q.Seq.d/                        662   0.0
SLG381 (SLG381Q) /CSM/SL/SLG3-D/SLG381Q.Seq.d/                        662   0.0
SLC743 (SLC743Q) /CSM/SL/SLC7-B/SLC743Q.Seq.d/                        662   0.0
SLB365 (SLB365Q) /CSM/SL/SLB3-C/SLB365Q.Seq.d/                        662   0.0
SLA333 (SLA333Q) /CSM/SL/SLA3-B/SLA333Q.Seq.d/                        662   0.0
SHL865 (SHL865Q) /CSM/SH/SHL8-C/SHL865Q.Seq.d/                        662   0.0
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/                        662   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   571   0.0    5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   2e-06  10
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   5e-05  9
BH133394|BH133394.1 ENTNI62TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38   0.016  2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   0.026  11
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   0.058  13
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    40   0.078  13
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    32   0.092  14
AX344618|AX344618.1 Sequence 43 from Patent WO0200927.             42   0.097  3
dna update 2005.12. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   231   3e-59
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   2.1
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   3.5
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   7.8
protein update 2009. 4.13
PSORT 

 psg: 0.54  gvh: 0.16  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.03
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CHS439 is nuc
5' end seq. ID CHS439F
5' end seq. 
>CHS439F.Seq
TGGCCTACTGGTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATA
GAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 117
3' end seq. ID CHS439Z
3' end seq. 
>CHS439Z.Seq
NNNNNNNNNNACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAA
ATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTG
AAAATGGTGAAGATATCGGTGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATG
AAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTG
AAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAA
ATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCG
TTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAA
TTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGG
ATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGA
AACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAA
TCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAAC
AAAATCAAAAATAATTTAATCATTCTTNCTTTTTAAAAAA
Length of 3' end seq. 700
Connected seq. ID CHS439P
Connected seq. 
>CHS439P.Seq
TGGCCTACTGGTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATA
GAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA----------ACC
TGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTAC
CAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGA
TATCGGTGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGA
TGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGA
AGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACA
ACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAA
AGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAA
CGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGC
TAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCC
TGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACA
AGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATA
ATTTAATCATTCTTNCTTTTTAAAAAA
Length of connected seq. 797
Full length Seq ID -
Full length Seq. -
Length of full length seq. -