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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS436
Library CH
(Link to library)
Clone ID CHS436
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14494-1
Original site URL
Representative seq. ID CHS436P
(Link to Original site)
Representative DNA sequence 
>CHS436 (CHS436Q) /CSM/CH/CHS4-B/CHS436Q.Seq.d/
AAGCTGCTGCCGAACAAGCCAAAAGAGAAATCAAAGAAAAGAAGAAAGCTGCTGCCAAAA
AAGCTGCCCCAAAAAAATAAATGATTAAATAAACGTTGGATCATTATTGTTTTAAAAAAA
AAAXXXXXXXXXXAAGCTGCTGCCGAACAAGCCAAAAGAGAAATCAAAGAAAAGAAGAAA
GCTGCTGCCAAAAAAGCTGCCCCAAAAAAATAAANNATTAAATAAACGTGGATCATT
sequence update 2002.10.25
Translated Amino Acid sequence 
kllpnkpkekskkrrkllpkklpqknk*LNKRWIIIVLKKK---

---KLLPNKPKEKSKKRRKLLPKKLPQKNKXLNKRGS
Translated Amino Acid sequence (All Frames) 
Frame A:
kllpnkpkekskkrrkllpkklpqknk*LNKRWIIIVLKKK---

---KLLPNKPKEKSKKRRKLLPKKLPQKNKXLNKRGS

Frame B:
sccrtsqkrnqrkeesccqkscpkkind*invgsllf*kk---

---sccrtsqkrnqrkeesccqkscpkkixx*invdh

Frame C:
aaaeqakreikekkkaaakkaapkk*mik*tldhycfkkk---

---aaaeqakreikekkkaaakkaapkk*xik*twii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ109 (VSJ109Q) /CSM/VS/VSJ1-A/VSJ109Q.Seq.d/                         42   0.004
VSI860 (VSI860Q) /CSM/VS/VSI8-C/VSI860Q.Seq.d/                         42   0.004
VSI713 (VSI713Q) /CSM/VS/VSI7-A/VSI713Q.Seq.d/                         42   0.004
VSI434 (VSI434Q) /CSM/VS/VSI4-B/VSI434Q.Seq.d/                         42   0.004
VSG792 (VSG792Q) /CSM/VS/VSG7-D/VSG792Q.Seq.d/                         42   0.004
VSG477 (VSG477Q) /CSM/VS/VSG4-D/VSG477Q.Seq.d/                         42   0.004
VSF626 (VSF626Q) /CSM/VS/VSF6-B/VSF626Q.Seq.d/                         42   0.004
VSF371 (VSF371Q) /CSM/VS/VSF3-C/VSF371Q.Seq.d/                         42   0.004
VSE158 (VSE158Q) /CSM/VS/VSE1-C/VSE158Q.Seq.d/                         42   0.004
VSD467 (VSD467Q) /CSM/VS/VSD4-C/VSD467Q.Seq.d/                         42   0.004
own update 2004.12.25
Homology vs DNA 

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 1,000,342
Number of Sequences: 51619857
Number of extensions: 1000342
Number of successful extensions: 47481
Number of sequences better than 10.0: 0
length of query: 237
length of database: 55,454,500,461
effective HSP length: 22
effective length of query: 215
effective length of database: 54,318,863,607
effective search space: 11678555675505
effective search space used: 11678555675505
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home
dna update 2005.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL590997_6(AL590997|pid:none) Mouse DNA sequence from clone RP23...    29   0.11
AL591417_4(AL591417|pid:none) Mouse DNA sequence from clone RP23...    28   0.40
AL590992_1(AL590992|pid:none) Mouse DNA sequence from clone RP23...    28   0.67
AK137752_1(AK137752|pid:none) Mus musculus 6 days neonate skin c...    28   0.87
AK004055_1(AK004055|pid:none) Mus musculus 18-day embryo whole b...    28   0.87
AK131904_1(AK131904|pid:none) Mus musculus adult male tongue cDN...    27   1.1
AL590997_30(AL590997|pid:none) Mouse DNA sequence from clone RP2...    27   2.3
AK009665_1(AK009665|pid:none) Mus musculus adult male tongue cDN...    27   3.1
AL590997_31(AL590997|pid:none) Mouse DNA sequence from clone RP2...    27   3.9
BC119472_1(BC119472|pid:none) Mus musculus predicted gene, OTTMU...    27   4.0
protein update 2009. 4.13
PSORT 

 psg: 0.40  gvh: 0.19  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.79  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for CHS436 is nuc
5' end seq. ID CHS436F
5' end seq. 
>CHS436F.Seq
AAGCTGCTGCCGAACAAGCCAAAAGAGAAATCAAAGAAAAGAAGAAAGCTGCTGCCAAAA
AAGCTGCCCCAAAAAAATAAATGATTAAATAAACGTTGGATCATTATTGTTTTAAAAAAA
AAANNNNNNNNNN
Length of 5' end seq. 133
3' end seq. ID CHS436Z
3' end seq. 
>CHS436Z.Seq
NNNNNNNNNNAAGCTGCTGCCGAACAAGCCAAAAGAGAAATCAAAGAAAAGAAGAAAGCT
GCTGCCAAAAAAGCTGCCCCAAAAAAATAAANNATTAAATAAACGTGGATCATT
Length of 3' end seq. 114
Connected seq. ID CHS436P
Connected seq. 
>CHS436P.Seq
AAGCTGCTGCCGAACAAGCCAAAAGAGAAATCAAAGAAAAGAAGAAAGCTGCTGCCAAAA
AAGCTGCCCCAAAAAAATAAATGATTAAATAAACGTTGGATCATTATTGTTTTAAAAAAA
AAA----------AAGCTGCTGCCGAACAAGCCAAAAGAGAAATCAAAGAAAAGAAGAAA
GCTGCTGCCAAAAAAGCTGCCCCAAAAAAATAAANNATTAAATAAACGTGGATCATT
Length of connected seq. 227
Full length Seq ID -
Full length Seq. -
Length of full length seq. -