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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS435
Library CH
(Link to library)
Clone ID CHS435
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CHS435P
(Link to Original site)
Representative DNA sequence 
>CHS435 (CHS435Q) /CSM/CH/CHS4-B/CHS435Q.Seq.d/
GAAGTAAAACATGATTCATTAANANACTNTGCANCAAATTGCATTTGGGGATTACTTGAT
AAAATTCAAAGTTNTTTACCAAAGGACAACAATAAAGTTTCAAAAGTTGAAAAANCATTT
TCAAGNGGCCAAAATAATAATATCGGTANCXXXXXXXXXXTCCAGAGAGACTATATGAAG
AAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGGCTGAAGAAATTGAAAGACAN
CAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAAT
GTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAA
CGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTT
TTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTC
TTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAG
AATGAAAATCAACAACAACAACAAGGACAACAACAGGTTCAAGCAACAAATGTTGAACAA
CAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAA
CAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTT
GAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTT
CAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAA
CAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAA
CAAGAACAAAATCAAAAATAATTTAATCATTCTTTNCTTTTTAAAAAACT
sequence update 2002.10.25
Translated Amino Acid sequence 
EVKHDSLXXXAXNCIWGLLDKIQSXLPKDNNKVSKVEKXFSXGQNNNIGX---

---PERLYEEIHNSNLNKAVQEG*rn*ktxkw*wftcckls*dcnsngkc*k**nyq*tr
ch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtif
k*kfttt**e*ksttttrtttgssnkc*ttnr*tt*syqrisktrstketknstrerccl
le*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprttr*ik
srkkstiirtrtkskii*sffxf*kt
Translated Amino Acid sequence (All Frames) 
Frame A:
EVKHDSLXXXAXNCIWGLLDKIQSXLPKDNNKVSKVEKXFSXGQNNNIGX---

---sreti*rns*fqfe*sssrglkklkdxkmvmvhll*tlirl*lkwemlkimklpmnk
mplnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnf
qikiynnlmrmkinnnnkdnnrfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmls
t*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*
ikkkinny*nknkiknnliilxflkn

Frame B:
k*nmih*xtxxqiafgdylikfkvxyqrttikfqklkxhfqxakiiisv---

---PERLYEEIHNSNLNKAVQEG*rn*ktxkw*wftcckls*dcnsngkc*k**nyq*tr
ch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtif
k*kfttt**e*ksttttrtttgssnkc*ttnr*tt*syqrisktrstketknstrerccl
le*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprttr*ik
srkkstiirtrtkskii*sffxf*kt

Frame C:
skt*fixxlcxklhlgit**nskxftkgqq*sfks*kxifkxpk**yrx---

---qrdymkkfiipi*ikqfkraeeierxqngngspavnshkivtqmgnvenneitneqd
aieqaqhlqriengedideyeaaqhevafldeneqdaaklqnemdqlellleeneeeqfs
nknlqqlnenenqqqqqgqqqvqatnveqqiveqlkvikefqrqdqqkkqkiqqendavy
lsdvekaqleldaelaknnkqenqdenlvqekqqspdqiknqlkniqheqqiqeqqdkln
qeknqqlleqeqnqk*fnhsxlfkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS435 (CHS435Q) /CSM/CH/CHS4-B/CHS435Q.Seq.d/                        973   0.0
AHQ546 (AHQ546Q) /CSM/AH/AHQ5-B/AHQ546Q.Seq.d/                        763   0.0
AHF785 (AHF785Q) /CSM/AH/AHF7-D/AHF785Q.Seq.d/                        763   0.0
AHE624 (AHE624Q) /CSM/AH/AHE6-A/AHE624Q.Seq.d/                        761   0.0
SHB457 (SHB457Q) /CSM/SH/SHB4-C/SHB457Q.Seq.d/                        759   0.0
AHK635 (AHK635Q) /CSM/AH/AHK6-B/AHK635Q.Seq.d/                        753   0.0
CHR687 (CHR687Q) /CSM/CH/CHR6-D/CHR687Q.Seq.d/                        749   0.0
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        747   0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        747   0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        747   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   648   0.0    5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   3e-25  8
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   7e-05  10
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   0.005  9
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   0.010  15
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    38   0.015  11
BH133394|BH133394.1 ENTNI62TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38   0.022  2
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    36   0.035  11
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   0.035  11
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    34   0.039  9
dna update 2005.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   256   4e-73
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   2.7
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   2.7
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    35   2.7
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   4.6
protein update 2009. 4.13
PSORT 

 psg: 0.75  gvh: 0.46  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHS435 is cyt
5' end seq. ID CHS435F
5' end seq. 
>CHS435F.Seq
GAAGTAAAACATGATTCATTAANANACTNTGCANCAAATTGCATTTGGGGATTACTTGAT
AAAATTCAAAGTTNTTTACCAAAGGACAACAATAAAGTTTCAAAAGTTGAAAAANCATTT
TCAAGNGGCCAAAATAATAATATCGGTANCNNNNNNNNNN
Length of 5' end seq. 160
3' end seq. ID CHS435Z
3' end seq. 
>CHS435Z.Seq
NNNNNNNNNNTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAG
TTCAAGAGGGCTGAAGAAATTGAAAGACANCAAAATGGTAATGGTTCACCTGCTGTAAAC
TCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAA
GATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAG
TATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAA
TTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTT
TCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAA
CAACAGGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAA
GAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTC
TACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAAT
AAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATT
AAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTA
AATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCAT
TCTTTNCTTTTTAAAAAACT
Length of 3' end seq. 800
Connected seq. ID CHS435P
Connected seq. 
>CHS435P.Seq
GAAGTAAAACATGATTCATTAANANACTNTGCANCAAATTGCATTTGGGGATTACTTGAT
AAAATTCAAAGTTNTTTACCAAAGGACAACAATAAAGTTTCAAAAGTTGAAAAANCATTT
TCAAGNGGCCAAAATAATAATATCGGTANC----------TCCAGAGAGACTATATGAAG
AAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGGCTGAAGAAATTGAAAGACAN
CAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAAT
GTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAA
CGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTT
TTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTC
TTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAG
AATGAAAATCAACAACAACAACAAGGACAACAACAGGTTCAAGCAACAAATGTTGAACAA
CAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAA
CAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTT
GAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTT
CAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAA
CAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAA
CAAGAACAAAATCAAAAATAATTTAATCATTCTTTNCTTTTTAAAAAACT
Length of connected seq. 940
Full length Seq ID -
Full length Seq. -
Length of full length seq. -