CHS431
Library CH
(Link to library)
Clone ID CHS431
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16430-1
Original site URL
Representative seq. ID CHS431P
(Link to Original site)
Representative DNA sequence
>CHS431 (CHS431Q) /CSM/CH/CHS4-B/CHS431Q.Seq.d/
GGACATTTAGGTCCTATATTCTAATTCATAATTAATTTTATTTGTTTTTTTTTGTAGAAC
ATAAAAAAATGGCTGAATCACAAGTTGAACGTTTCACATTCCAAGCTGAAATTAATCAGC
TTATGTCCCTTATTATTAATACTTTTTATTCAAATAAAGAAGTATTTTTAAGAGAATTGA
TTTCAAATGCATCTGATGCCTTAGATAAAATTCGTTACCAATCATTAACTGATGCATCAG
TTTTGGAATCAAAAACTGAACTCGAAATTAAAATTATTCCAGATAAGACTGCCAAAACTC
TTACACTCATTGATAGTGGTATTGGTATGACCAAAACCGATATGGTAAAGAATTTAGGTA
CTATTGCTCGTTCAGGTACTAAAAACTTTATGGAACAATTACAAAGTGGTGCCGCTGATA
TCAGTATGATTGGTCAATTTGGTGTTGGTTTCTACTCTGCTTACTTAGTTGCCGCNTACT
GTTATTGTTCACTCTAAAAACAATGATGATGAACAATACGTTTGGGAATCAAGTGCTGGT
GGTGAATTTACCATTGCTCTCGATCATACCGAACCAXXXXXXXXXXCTTGAAGTCATTTA
CATGTGTGACCCAATTGATGAATATGCTGTTCAACAATTAAAAGAATATGACGGTAAGAA
ATTAGTATCAATTACCAAAGAAGGTTTGAAATTAGATGAAACCGAAGATGAAAAGAAAAA
AGCTGAACAAGATAAAGCTGCCAATGAAGAATTACTCAAACAAGTTAAAGATGTATTGGG
TGATAAAGTTGAAAAGGTAGTTCTCTCAACTCGTCTTGCCAACTCACCATGTGTTTTAGT
TACCTCTGAATATGGTTGGTCAGCAAACATGGAACGTATCATGAAAGCTCAAGCTCTCCG
TGACTCTTCAATGTCATCATACATGTCATCAAAGAAAACTTTAGAATTAAATCCAGATCA
CCCAATCGTTAGAGATTTAGCCAAAAAAGCCGCCGAAAAAAGTAAAACTTTCAAAGACTT
TGTTTACTTATTATATGAAACTGCTCTCTTAACTTCAGGTTTCTCATTAGATGAACCATC
ATCATTTGCTTCACGTATTCATCGTATGATTAAATTAGGTTTAAGCATTCAAGATGATTC
ATCAGCAACAACTGAAGAATCAACAAACACAACAACCAGTGATGATATTCCACCATTAGA
AGAAAACGATGAACCATCTGAAATGGAAAAAGTCGACTAGATTTAATTACTAGCCCTTTT
GCTATCAATTTTTGGAATATTGTTATATTATTATAATAAAATAAATTTTAAAAAAAATCT
TCAAATA
sequence update 2002.10.25
Translated Amino Acid sequence
di*vlysns*lilfvffcrt*kng*its*tfhips*n*sayvpyy*yflfk*rsifkrid
fkci*clr*nslpiin*cisfgikn*trn*nysr*dcqnsyth**wywydqnrygkefry
ycsfry*klygtitkwcr*YQYDWSIWCWFLLCLLSCRXLLLFTLKTMMMNNTFGNQVLV
VNLPLLSIIPN---

---LEVIYMCDPIDEYAVQQLKEYDGKKLVSITKEGLKLDETEDEKKKAEQDKAANEELL
KQVKDVLGDKVEKVVLSTRLANSPCVLVTSEYGWSANMERIMKAQALRDSSMSSYMSSKK
TLELNPDHPIVRDLAKKAAEKSKTFKDFVYLLYETALLTSGFSLDEPSSFASRIHRMIKL
GLSIQDDSSATTEESTNTTTSDDIPPLEENDEPSEMEKVD*i*llalllsifgillyyyn
kinfkknlqi


Translated Amino Acid sequence (All Frames)
Frame A:
ghlgpif*fiinficffl*nikkwlnhklnvshsklklislcplllilfiqikkyf*en*
fqmhlmp*ikfvtnh*lmhqfwnqklnsklklfqirlpkllhslivvlv*pkpiw*ri*v
lllvqvlktlwnnykvvplisv*lvnlvlvstllt*lpxtvivhsknnddeqyvwessag
geftialdhtep---

---LEVIYMCDPIDEYAVQQLKEYDGKKLVSITKEGLKLDETEDEKKKAEQDKAANEELL
KQVKDVLGDKVEKVVLSTRLANSPCVLVTSEYGWSANMERIMKAQALRDSSMSSYMSSKK
TLELNPDHPIVRDLAKKAAEKSKTFKDFVYLLYETALLTSGFSLDEPSSFASRIHRMIKL
GLSIQDDSSATTEESTNTTTSDDIPPLEENDEPSEMEKVD*i*llalllsifgillyyyn
kinfkknlqi

Frame B:
di*vlysns*lilfvffcrt*kng*its*tfhips*n*sayvpyy*yflfk*rsifkrid
fkci*clr*nslpiin*cisfgikn*trn*nysr*dcqnsyth**wywydqnrygkefry
ycsfry*klygtitkwcr*YQYDWSIWCWFLLCLLSCRXLLLFTLKTMMMNNTFGNQVLV
VNLPLLSIIPN---

---lksftcvtqlmnmlfnn*knmtvrn*yqlpkkv*n*mkpkmkrkklnkiklpmknys
nklkmywviklkr*fsqlvlpthhvf*lplnmvgqqtwnvs*klklsvtlqchhtchqrk
l*n*iqitqslei*pkkppkkvklsktlftyymklls*lqvsh*mnhhhllhvfiv*ln*
v*afkmihqqqlknqqtqqpvmifhh*kktmnhlkwkkstrfny*pfcyqfleycyiiii
k*ilkkifk

Frame C:
tfrsyilihn*fylfffvehkkmaesqverftfqaeinqlmsliintfysnkevflreli
snasdaldkiryqsltdasvleskteleikiipdktaktltlidsgigmtktdmvknlgt
iarsgtknfmeqlqsgaadismigqfgvgfysaylvaaycycsl*kq***tirlgikcww
*iyhcsrsyrt---

---*shlhv*pn**iccstikri*r*eisinyqrrfeir*nrr*keks*tr*scq*ritq
ts*rcig**s*kgsslnsscqltmcfsyl*iwlvskhgtyhessssp*lfnviihviken
friksrspnr*rfsqksrrkk*nfqrlcllii*ncslnfrflir*tiiicftyssyd*ir
fkhsr*fisnn*rinkhnnq**ystirrkr*ti*ngksrldlitspfainfwnivill**
nkf*kkssn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHS431 (CHS431Q) /CSM/CH/CHS4-B/CHS431Q.Seq.d/ 1786 0.0
VHP152 (VHP152Q) /CSM/VH/VHP1-C/VHP152Q.Seq.d/ 1752 0.0
VHP202 (VHP202Q) /CSM/VH/VHP2-A/VHP202Q.Seq.d/ 1021 0.0
VHM703 (VHM703Q) /CSM/VH/VHM7-A/VHM703Q.Seq.d/ 1021 0.0
VHL421 (VHL421Q) /CSM/VH/VHL4-A/VHL421Q.Seq.d/ 1021 0.0
VHK487 (VHK487Q) /CSM/VH/VHK4-D/VHK487Q.Seq.d/ 1021 0.0
VHK280 (VHK280Q) /CSM/VH/VHK2-D/VHK280Q.Seq.d/ 1021 0.0
VHJ821 (VHJ821Q) /CSM/VH/VHJ8-A/VHJ821Q.Seq.d/ 1021 0.0
VHI607 (VHI607Q) /CSM/VH/VHI6-A/VHI607Q.Seq.d/ 1021 0.0
VHH869 (VHH869Q) /CSM/VH/VHH8-C/VHH869Q.Seq.d/ 1021 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L43591|L43591.1 Dictyostelium discoideum (clone C 6.1.1) heat shock cognate protein (hsc90) mRNA, complete cds. 803 0.0 2
L34028|L34028.1 Plasmodium falciparum (clone HB3) heat shock protein 86 gene, complete cds. 60 4e-51 9
L34027|L34027.1 Plasmodium falciparum (clone Dd2) heat shock protein 86 gene, complete cds. 60 5e-51 10
Z29667|Z29667.1 P.falciparum (7) mRNA for heat-shock protein. 60 5e-49 9
AJ890081|AJ890081.1 Delia antiqua mRNA for Hsp90 protein. 72 1e-48 8
AF165818|AF165818.4 Guillardia theta nucleomorph chromosome 1, complete sequence. 80 4e-47 10
AF249998|AF249998.1 Habrotrocha constricta 82 kDa heat shock protein 2 (hsp82-2) gene, partial cds. 88 1e-46 4
AF030694|AF030694.2 Plasmodium falciparum strain Dd2 heat shock protein 86 (HSP86), O1 (o1), O3 (o3), O2 (o2), CG8 (cg8), CG4 (cg4), CG3 (cg3), putative chloroquine resistance transporter (crt), CG9 (cg9), CG1 (cg1), CG6 (cg6), CG2 (cg2), and CG7 (cg7) genes, complete cds. 60 2e-46 12
AY122634|AY122634.1 Naegleria gruberi strain ATCC 30224 heat shock protein 90 (HSP-90) gene, partial cds. 82 1e-44 7
AY423866|AY423866.1 Cryptosporidium parvum heat shock protein 90 gene, partial cds. 74 2e-42 8
dna update 2005.11.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54651) RecName: Full=Heat shock cognate 90 kDa protein; 305 3e-81
L43591_1(L43591|pid:none) Dictyostelium discoideum (clone C 6.1.... 305 3e-81
AB300196_1(AB300196|pid:none) Physarum polycephalum hsp90 mRNA f... 216 2e-61
AY851367_1(AY851367|pid:none) Liriomyza huidobrensis heat shock ... 202 4e-59
(P04810) RecName: Full=Heat shock protein 83; AltName: Full=HSP ... 200 4e-59
(P04811) RecName: Full=Heat shock protein 83; AltName: Full=HSP ... 200 4e-59
U57459_1(U57459|pid:none) Drosophila melanogaster heat shock pro... 200 4e-59
U57467_1(U57467|pid:none) Drosophila melanogaster heat shock pro... 200 4e-59
(O02192) RecName: Full=Heat shock protein 83; AltName: Full=HSP ... 200 5e-59
C24827(C24827) heat shock 82K protein - fruit fly (Drosophila ps... 199 5e-59
protein update 2009. 4.13
PSORT

psg: 0.75 gvh: 0.72 alm: 0.29 top: 0.67 tms: 0.07 mit: 0.25 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.13 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: mitochondrial
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for CHS431 is cyt

5' end seq. ID CHS431F
5' end seq.
>CHS431F.Seq
GGACATTTAGGTCCTATATTCTAATTCATAATTAATTTTATTTGTTTTTTTTTGTAGAAC
ATAAAAAAATGGCTGAATCACAAGTTGAACGTTTCACATTCCAAGCTGAAATTAATCAGC
TTATGTCCCTTATTATTAATACTTTTTATTCAAATAAAGAAGTATTTTTAAGAGAATTGA
TTTCAAATGCATCTGATGCCTTAGATAAAATTCGTTACCAATCATTAACTGATGCATCAG
TTTTGGAATCAAAAACTGAACTCGAAATTAAAATTATTCCAGATAAGACTGCCAAAACTC
TTACACTCATTGATAGTGGTATTGGTATGACCAAAACCGATATGGTAAAGAATTTAGGTA
CTATTGCTCGTTCAGGTACTAAAAACTTTATGGAACAATTACAAAGTGGTGCCGCTGATA
TCAGTATGATTGGTCAATTTGGTGTTGGTTTCTACTCTGCTTACTTAGTTGCCGCNTACT
GTTATTGTTCACTCTAAAAACAATGATGATGAACAATACGTTTGGGAATCAAGTGCTGGT
GGTGAATTTACCATTGCTCTCGATCATACCGAACCANNNNNNNNNN
Length of 5' end seq. 586
3' end seq. ID CHS431Z
3' end seq.
>CHS431Z.Seq
NNNNNNNNNNCTTGAAGTCATTTACATGTGTGACCCAATTGATGAATATGCTGTTCAACA
ATTAAAAGAATATGACGGTAAGAAATTAGTATCAATTACCAAAGAAGGTTTGAAATTAGA
TGAAACCGAAGATGAAAAGAAAAAAGCTGAACAAGATAAAGCTGCCAATGAAGAATTACT
CAAACAAGTTAAAGATGTATTGGGTGATAAAGTTGAAAAGGTAGTTCTCTCAACTCGTCT
TGCCAACTCACCATGTGTTTTAGTTACCTCTGAATATGGTTGGTCAGCAAACATGGAACG
TATCATGAAAGCTCAAGCTCTCCGTGACTCTTCAATGTCATCATACATGTCATCAAAGAA
AACTTTAGAATTAAATCCAGATCACCCAATCGTTAGAGATTTAGCCAAAAAAGCCGCCGA
AAAAAGTAAAACTTTCAAAGACTTTGTTTACTTATTATATGAAACTGCTCTCTTAACTTC
AGGTTTCTCATTAGATGAACCATCATCATTTGCTTCACGTATTCATCGTATGATTAAATT
AGGTTTAAGCATTCAAGATGATTCATCAGCAACAACTGAAGAATCAACAAACACAACAAC
CAGTGATGATATTCCACCATTAGAAGAAAACGATGAACCATCTGAAATGGAAAAAGTCGA
CTAGATTTAATTACTAGCCCTTTTGCTATCAATTTTTGGAATATTGTTATATTATTATAA
TAAAATAAATTTTAAAAAAAATCTTCAAATA
Length of 3' end seq. 751
Connected seq. ID CHS431P
Connected seq.
>CHS431P.Seq
GGACATTTAGGTCCTATATTCTAATTCATAATTAATTTTATTTGTTTTTTTTTGTAGAAC
ATAAAAAAATGGCTGAATCACAAGTTGAACGTTTCACATTCCAAGCTGAAATTAATCAGC
TTATGTCCCTTATTATTAATACTTTTTATTCAAATAAAGAAGTATTTTTAAGAGAATTGA
TTTCAAATGCATCTGATGCCTTAGATAAAATTCGTTACCAATCATTAACTGATGCATCAG
TTTTGGAATCAAAAACTGAACTCGAAATTAAAATTATTCCAGATAAGACTGCCAAAACTC
TTACACTCATTGATAGTGGTATTGGTATGACCAAAACCGATATGGTAAAGAATTTAGGTA
CTATTGCTCGTTCAGGTACTAAAAACTTTATGGAACAATTACAAAGTGGTGCCGCTGATA
TCAGTATGATTGGTCAATTTGGTGTTGGTTTCTACTCTGCTTACTTAGTTGCCGCNTACT
GTTATTGTTCACTCTAAAAACAATGATGATGAACAATACGTTTGGGAATCAAGTGCTGGT
GGTGAATTTACCATTGCTCTCGATCATACCGAACCA----------CTTGAAGTCATTTA
CATGTGTGACCCAATTGATGAATATGCTGTTCAACAATTAAAAGAATATGACGGTAAGAA
ATTAGTATCAATTACCAAAGAAGGTTTGAAATTAGATGAAACCGAAGATGAAAAGAAAAA
AGCTGAACAAGATAAAGCTGCCAATGAAGAATTACTCAAACAAGTTAAAGATGTATTGGG
TGATAAAGTTGAAAAGGTAGTTCTCTCAACTCGTCTTGCCAACTCACCATGTGTTTTAGT
TACCTCTGAATATGGTTGGTCAGCAAACATGGAACGTATCATGAAAGCTCAAGCTCTCCG
TGACTCTTCAATGTCATCATACATGTCATCAAAGAAAACTTTAGAATTAAATCCAGATCA
CCCAATCGTTAGAGATTTAGCCAAAAAAGCCGCCGAAAAAAGTAAAACTTTCAAAGACTT
TGTTTACTTATTATATGAAACTGCTCTCTTAACTTCAGGTTTCTCATTAGATGAACCATC
ATCATTTGCTTCACGTATTCATCGTATGATTAAATTAGGTTTAAGCATTCAAGATGATTC
ATCAGCAACAACTGAAGAATCAACAAACACAACAACCAGTGATGATATTCCACCATTAGA
AGAAAACGATGAACCATCTGAAATGGAAAAAGTCGACTAGATTTAATTACTAGCCCTTTT
GCTATCAATTTTTGGAATATTGTTATATTATTATAATAAAATAAATTTTAAAAAAAATCT
TCAAATA
Length of connected seq. 1317
Full length Seq ID -
Full length Seq. -
Length of full length seq. -