CHS428
Library CH
(Link to library)
Clone ID CHS428
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHS428 (CHS428Q) /CSM/CH/CHS4-B/CHS428Q.Seq.d/
XXXXXXXXXXTGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATG
GTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTTAGATGAAAAT
GAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAG
AATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAA
CAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAA
CAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAA
CAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCT
GAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAA
CAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATNCAA
GAACNGCNNGATANATTAAA
sequence update 2002. 9.10
Translated Amino Acid sequence
---NKMPLNKLNIYNVLKMVKISMSMKLPNMKLPFLDENEQDAAKLQNEMDQLELLLEEN
EEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQ
ENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQXQE
XXDXL


Translated Amino Acid sequence (All Frames)
Frame A:
---eqdaieqaqhlqriengedideyeaaqhevaffr*k*trcc*itk*ngpirtlt*re
*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknst
rercclle*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnxr
taxxik


Frame B:
---NKMPLNKLNIYNVLKMVKISMSMKLPNMKLPFLDENEQDAAKLQNEMDQLELLLEEN
EEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQ
ENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQXQE
XXDXL


Frame C:
---trch*tsstftty*kw*ryr*v*scpt*sclf*mkmnkmllnykmkwtn*nsylkrm
kknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnk
rtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnkxkn
xxix*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHS428 (CHS428Q) /CSM/CH/CHS4-B/CHS428Q.Seq.d/ 531 e-150
VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/ 523 e-148
SLI803 (SLI803Q) /CSM/SL/SLI8-A/SLI803Q.Seq.d/ 523 e-148
SLI655 (SLI655Q) /CSM/SL/SLI6-C/SLI655Q.Seq.d/ 523 e-148
SLH374 (SLH374Q) /CSM/SL/SLH3-D/SLH374Q.Seq.d/ 523 e-148
SLH142 (SLH142Q) /CSM/SL/SLH1-B/SLH142Q.Seq.d/ 523 e-148
SLG381 (SLG381Q) /CSM/SL/SLG3-D/SLG381Q.Seq.d/ 523 e-148
SLC743 (SLC743Q) /CSM/SL/SLC7-B/SLC743Q.Seq.d/ 523 e-148
SLB365 (SLB365Q) /CSM/SL/SLB3-C/SLB365Q.Seq.d/ 523 e-148
SLA333 (SLA333Q) /CSM/SL/SLA3-B/SLA333Q.Seq.d/ 523 e-148

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 523 0.0 3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 3e-25 1
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 1/4. 38 0.034 11
AB006702|AB006702.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPO12. 40 0.14 4
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence. 48 0.20 1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence. 48 0.20 1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence. 48 0.20 1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence. 48 0.20 1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence. 48 0.20 1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence. 48 0.20 1
dna update 2005.11.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 147 2e-48
AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso... 38 0.20
AP009511_3(AP009511|pid:none) Uncultured Termite group 1 bacteri... 35 0.99
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143; 35 0.99
(Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028... 35 1.7
AE016819_111(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 34 2.2
AE017343_653(AE017343|pid:none) Cryptococcus neoformans var. neo... 34 2.2
(P47048) RecName: Full=Uncharacterized protein YJL049W; &AY6926... 34 2.9
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp... 34 2.9
AE017346_327(AE017346|pid:none) Cryptococcus neoformans var. neo... 33 3.8
protein update 2009. 5.21
PSORT

psg: 0.67 gvh: 0.16 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for CHS428 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHS428Z
3' end seq.
>CHS428Z.Seq
NNNNNNNNNNTGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATG
GTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTTAGATGAAAAT
GAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAG
AATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAA
CAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAA
CAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAA
CAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCT
GAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAA
CAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATNCAA
GAACNGCNNGATANATTAAA
Length of 3' end seq. 560
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -