CHS423
Library CH
(Link to library)
Clone ID CHS423
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHS423 (CHS423Q) /CSM/CH/CHS4-A/CHS423Q.Seq.d/
AAAAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTA
AATAATAGAAATAGTAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAAGATTT
CTTTTTCTTTTTTTGAAATTGGTATAATTAAAAATGTATAGTAAAAAATATACATCCTTT
GTAATAGTATTGATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAATTTCTGAA
GATGNGGGTAAAGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTGAANATGTA
GTTGTNCAATTTGANAATGTTGCAAATCAAGTTATTGAANAATTAAAAGTTGAACATCAA
AGACAAGAATTATTAGGNGAAGTAAAACATGATTCATTAANANACTCTGCANCAAATTAC
ATTTGGGGATTACTTGATAAAATTCAAAGTTATTTACCAAAAGACAACAATAAAGTTTCA
AAAGTTGAANAAGCATTTTCAAGNGGCCAAAATAATAATATCGGTAGCAGTATTGGNGAT
TCAACTGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
kk**iyyqitifsflsf*slnnrnskn*y*kkgtlkkkrflflflklv*LKMYSKKYTSF
VIVLILSCIISTCXSNQISEDXGKAINQKLNENIEKVEXVVVQFXNVANQVIEXLKVEHQ
RQELLGEVKHDSLXXSAXNYIWGLLDKIQSYLPKDNNKVSKVEXAFSXGQNNNIGSSIGD
ST---


Translated Amino Acid sequence (All Frames)
Frame A:
kk**iyyqitifsflsf*slnnrnskn*y*kkgtlkkkrflflflklv*LKMYSKKYTSF
VIVLILSCIISTCXSNQISEDXGKAINQKLNENIEKVEXVVVQFXNVANQVIEXLKVEHQ
RQELLGEVKHDSLXXSAXNYIWGLLDKIQSYLPKDNNKVSKVEXAFSXGQNNNIGSSIGD
ST---


Frame B:
knnkftik*lfflfflfkv*iieivkinikkker*kkkdfffff*nwyn*kcivknihpl
**y*fyhvsfqhvhlikflkmxvkqlikn*mkilkklxm*lxnlxmlqikllxn*klnik
dkny*xk*nmih*xtlxqitfgdylikfkviyqkttikfqklxkhfqxakiiisvavlxi
q---


Frame C:
kiinllsnnyfffsfflkfk**k**klilkkrnvkkkkisfsffeigiiknv**kiyilc
nsidfimyhfnmxi*snf*rxg*sn*skik*ky*ks*xcscxi*xcckssy*xiks*tsk
triirxskt*fixxlcxklhlgit**nsklftkrqq*sfks*xsifkxpk**yr*qywxf
n---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSD275 (SSD275Q) /CSM/SS/SSD2-D/SSD275Q.Seq.d/ 741 0.0
SHL319 (SHL319Q) /CSM/SH/SHL3-A/SHL319Q.Seq.d/ 741 0.0
SHK205 (SHK205Q) /CSM/SH/SHK2-A/SHK205Q.Seq.d/ 741 0.0
SHH539 (SHH539Q) /CSM/SH/SHH5-B/SHH539Q.Seq.d/ 741 0.0
SHH409 (SHH409Q) /CSM/SH/SHH4-A/SHH409Q.Seq.d/ 741 0.0
SHC255 (SHC255Q) /CSM/SH/SHC2-C/SHC255Q.Seq.d/ 741 0.0
SHA289 (SHA289Q) /CSM/SH/SHA2-D/SHA289Q.Seq.d/ 741 0.0
SHA112 (SHA112Q) /CSM/SH/SHA1-A/SHA112Q.Seq.d/ 741 0.0
CHS423 (CHS423Q) /CSM/CH/CHS4-A/CHS423Q.Seq.d/ 741 0.0
CHO150 (CHO150Q) /CSM/CH/CHO1-C/CHO150Q.Seq.d/ 741 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 577 0.0 4
CL127218|CL127218.1 ISB1-92C10_Sp6.1 ISB1 Silurana tropicalis genomic clone ISB1-92C10, genomic survey sequence. 36 0.051 3
CR848005|CR848005.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-284B10. 44 0.11 5
AC019857|AC019857.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 48 0.20 1
AC093097|AC093097.1 Drosophila melanogaster, chromosome 2L, region 36A-36B, BAC clone BACR26O03, complete sequence. 48 0.20 1
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4. 48 0.20 1
AC006214|AC006214.1 Drosophila melanogaster, chromosome 2L, region 36A7-36A13, P1 clones DS04680 and DS00592, complete sequence. 48 0.20 1
AE003652|AE003652.2 Drosophila melanogaster chromosome 2L, section 61 of 83 of the complete sequence. 48 0.20 1
AL929359|AL929359.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5. 44 0.26 7
AC157985|AC157985.10 Medicago truncatula clone mth2-150l20, WORKING DRAFT SEQUENCE, 7 ordered pieces. 38 0.36 3
dna update 2005.11.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 206 2e-52

protein update 2008.11.10
PSORT

psg: 0.98 gvh: 0.71 alm: 0.47 top: 0.20 tms: 0.00 mit: 0.42 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: extracellular, including cell wall
12.0 %: vacuolar
12.0 %: endoplasmic reticulum
8.0 %: cytoplasmic
8.0 %: nuclear
4.0 %: mitochondrial

>> prediction for CHS423 is exc

5' end seq. ID CHS423F
5' end seq.
>CHS423F.Seq
AAAAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTA
AATAATAGAAATAGTAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAAGATTT
CTTTTTCTTTTTTTGAAATTGGTATAATTAAAAATGTATAGTAAAAAATATACATCCTTT
GTAATAGTATTGATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAATTTCTGAA
GATGNGGGTAAAGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTGAANATGTA
GTTGTNCAATTTGANAATGTTGCAAATCAAGTTATTGAANAATTAAAAGTTGAACATCAA
AGACAAGAATTATTAGGNGAAGTAAAACATGATTCATTAANANACTCTGCANCAAATTAC
ATTTGGGGATTACTTGATAAAATTCAAAGTTATTTACCAAAAGACAACAATAAAGTTTCA
AAAGTTGAANAAGCATTTTCAAGNGGCCAAAATAATAATATCGGTAGCAGTATTGGNGAT
TCAACTGNNNNNNNNNN
Length of 5' end seq. 557
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -