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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS420
Library CH
(Link to library)
Clone ID CHS420
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16411-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHS420 (CHS420Q) /CSM/CH/CHS4-A/CHS420Q.Seq.d/
XXXXXXXXXXTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAA
GTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGT
CTTACCGATGGTCAAGGNTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTC
AAATTTAGGTANTTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACT
CTTTATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAG
AGTTTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTC
ATAGTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGT
CTTTAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCT
TTGGTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAAC
TCATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATC
ATCTCAACTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCA
AAAAACAAAAAACTATTAAAAAAAAAAATAAAAATA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---n*srqkktiqcsiv**s*kssstslecsltsig*rssyrwsrxep*isqmllsl*pq
i*VXQYILGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLH
SIITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKL
ILGGKLKENQGVVVNEKDHHLNFDIIDLKQQQQRPASPTKKQKTIKKKNKN
Translated Amino Acid sequence (All Frames) 
Frame A:
---n*srqkktiqcsiv**s*kssstslecsltsig*rssyrwsrxep*isqmllsl*pq
i*VXQYILGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLH
SIITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKL
ILGGKLKENQGVVVNEKDHHLNFDIIDLKQQQQRPASPTKKQKTIKKKNKN


Frame B:
---teavrrrpysvvlfdevekahqqvwnvllqvldegrltdgqg*nrrflkccyhydlk
frxfntslvnkqtkkvvttlyhklvkikslmklenisvqsf*ivsmi*lsllh*vkktfi
vlllfn*dpskrd*kikicl*rfqtml*iqlsmlhmiqslvvdh*nvtlkrilslnlvns
slvvn*kkikvllsmkkiiistlil*i*nnnnnvqllqpknkkllkkkiki


Frame C:
---lkpseedhtv*yclmklkklinkfgmfsykywmkvvlpmvkxrtvdfsnvviimtsn
lgxsihpw*tskqrrw*qlfitsl*r*sh**s*ktfpsrvfkssr*ynclysie*rkps*
yyyssikirrkeirrskyvfkdfkrcfrfnyqcci*snlww*tietlh*keych*t**th
pww*ikrksrcccq*krsssql*yyrfktttttssfsnqktkny*kkk*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS420 (CHS420Q) /CSM/CH/CHS4-A/CHS420Q.Seq.d/                       1275   0.0
VHK241 (VHK241Q) /CSM/VH/VHK2-B/VHK241Q.Seq.d/                       1249   0.0
VHI333 (VHI333Q) /CSM/VH/VHI3-B/VHI333Q.Seq.d/                       1249   0.0
SLA449 (SLA449Q) /CSM/SL/SLA4-C/SLA449Q.Seq.d/                       1249   0.0
SHL887 (SHL887Q) /CSM/SH/SHL8-D/SHL887Q.Seq.d/                       1249   0.0
SHL827 (SHL827Q) /CSM/SH/SHL8-B/SHL827Q.Seq.d/                       1249   0.0
SHL818 (SHL818Q) /CSM/SH/SHL8-A/SHL818Q.Seq.d/                       1249   0.0
SHL678 (SHL678Q) /CSM/SH/SHL6-D/SHL678Q.Seq.d/                       1249   0.0
SHL672 (SHL672Q) /CSM/SH/SHL6-C/SHL672Q.Seq.d/                       1249   0.0
SHL591 (SHL591Q) /CSM/SH/SHL5-D/SHL591Q.Seq.d/                       1249   0.0
own update 2002.10. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BQ862449|BQ862449.1 QGC21B24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA cloneQGC21B24, mRNA sequence.    80   5e-12  2
BH165696|BH165696.1 ENTTP28TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   3e-07  1
BH164508|BH164508.1 ENTTD23TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   3e-07  1
BH163900|BH163900.1 ENTSJ80TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   3e-07  1
BH163033|BH163033.1 ENTRP52TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   3e-07  1
BH161826|BH161826.1 ENTRN55TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   3e-07  1
BH159060|BH159060.1 ENTTR44TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   3e-07  1
BH158420|BH158420.1 ENTRY44TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   3e-07  1
BH156349|BH156349.1 ENTRL93TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   3e-07  1
BH149144|BH149144.1 ENTQQ09TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   3e-07  1
dna update 2005.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970534_1(AJ970534|pid:none) Triticum turgidum subsp. durum par...   121   7e-46
AY764155_1(AY764155|pid:none) Vitis vinifera heat shock protein ...   118   9e-46
AJ970533_1(AJ970533|pid:none) Triticum turgidum subsp. durum par...   120   1e-45
AJ970535_1(AJ970535|pid:none) Triticum turgidum subsp. durum par...   120   1e-45
(Q6F2Y7) RecName: Full=Heat shock protein 101;  &AC130611_3(AC13...   120   1e-45
AF097363_1(AF097363|pid:none) Triticum aestivum heat shock prote...   120   2e-45
CP000422_1040(CP000422|pid:none) Pediococcus pentosaceus ATCC 25...   120   3e-45
AF174433_1(AF174433|pid:none) Triticum aestivum heat shock prote...   119   3e-45
L35272_1(L35272|pid:none) Glycine max heat shock protein (SB100)...   116   3e-45
BT066296_1(BT066296|pid:none) Zea mays full-length cDNA clone ZM...   119   4e-45
protein update 2009. 5.21
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHS420 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHS420Z
3' end seq. 
>CHS420Z.Seq
NNNNNNNNNNTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAA
GTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGT
CTTACCGATGGTCAAGGNTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTC
AAATTTAGGTANTTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACT
CTTTATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAG
AGTTTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTC
ATAGTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGT
CTTTAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCT
TTGGTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAAC
TCATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATC
ATCTCAACTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCA
AAAAACAAAAAACTATTAAAAAAAAAAATAAAAATA
Length of 3' end seq. 696
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -