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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS414
Library CH
(Link to library)
Clone ID CHS414
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15707-1
Original site URL
Representative seq. ID CHS414P
(Link to Original site)
Representative DNA sequence 
>CHS414 (CHS414Q) /CSM/CH/CHS4-A/CHS414Q.Seq.d/
ATTATTTATTTAAAAAACAAATAATAAATTAATAAATAATATTTACACCAAACAATAACC
AAACGTCGAAAACGAAAAATCAATTTCAAAAAAAAATAATAATAATTGTTAAATAATTTT
ATAATATTAATTTTATTTTATTTTTATTTAATTTTTTAATTTGTATTATTAAAGTCACAC
ATATTAAAAAAAAAAAAAACCNNCCNGNAAAAAAAAAXXXXXXXXXXTTCAAACACATAG
AAGGTAAAGAGGGTTTGGTTAGTTTCCCATCCATTATTCCAGGTCATTATGAAGCTCGTC
TCTTTAAGGATAAATATACTCTTATTCAAAAGTCTAGCTCCATTCAAGTTGGTCCATCCG
TTACTTTATCAGCTCATGTAATTGGTGATGAAATCTCTGTCACCTATAAAGTAAACTCTG
AAACTGGTGCCAACACTAAAGATTGGATCGGTATTTATCATCCAATTCAACGTAATAAAC
ATTACATTGAGTCATTGTATGCTTCAACCTCTGGTACCATCACTTTCAAATCACCAAGAA
TACCAGGTCTCTATGAGATTCGTTACTTTTTACATCCAACCAAATATAATGAACAAGCAA
AGATCTCATTTGAAATCATTGATAACGATAAGATTCAAGTCCTTAGTGAAAGTCAATCTT
GTCTTACCCTCTCACCAGATCAAGAGTTTAG
sequence update 2002.10.25
Translated Amino Acid sequence 
ylfkkqiin**iiftpnnnqtsktknqfqkkiiiivk*FYNINFILFLFNFLICIIKVTH
IKKKKNXPXKK---

---FKHIEGKEGLVSFPSIIPGHYEARLFKDKYTLIQKSSSIQVGPSVTLSAHVIGDEIS
VTYKVNSETGANTKDWIGIYHPIQRNKHYIESLYASTSGTITFKSPRIPGLYEIRYFLHP
TKYNEQAKISFEIIDNDKIQVLSESQSCLTLSPDQEF
Translated Amino Acid sequence (All Frames) 
Frame A:
iiylknk**ink*ylhqtitkrrkrkinfkkk***llnnfiililfyfylif*fvllksh
ilkkkktxxxkk---

---FKHIEGKEGLVSFPSIIPGHYEARLFKDKYTLIQKSSSIQVGPSVTLSAHVIGDEIS
VTYKVNSETGANTKDWIGIYHPIQRNKHYIESLYASTSGTITFKSPRIPGLYEIRYFLHP
TKYNEQAKISFEIIDNDKIQVLSESQSCLTLSPDQEF

Frame B:
lfi*ktnnklinniytkq*pnveneksiskknnnnc*iil*y*fyfifi*ffnlyy*sht
y*kkkkpxxkkk---

---snt*kvkrvwlvshplfqvimklvslrinillfkslapfklvhpllyqlm*lvmksl
spik*tlklvptlkigsvfiiqfnvinitlshcmlqplvpslsnhqeyqvsmrfvtfyiq
pnimnkqrshlkslitirfkslvkvnlvlpshqiksl

Frame C:
ylfkkqiin**iiftpnnnqtsktknqfqkkiiiivk*FYNINFILFLFNFLICIIKVTH
IKKKKNXPXKK---

---qthrr*rgfg*fpihysrsl*sssl*g*iysyskv*lhsswsiryfisscnw**nlc
hl*skl*nwcqh*rldrylssnst**tlh*vivcfnlwyhhfqitkntrsl*dsllftsn
qi**tskdli*nh**r*dssp**ksilsypltrsrv*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ758 (VSJ758Q) /CSM/VS/VSJ7-C/VSJ758Q.Seq.d/                        920   0.0
SHL585 (SHL585Q) /CSM/SH/SHL5-D/SHL585Q.Seq.d/                        920   0.0
CHS414 (CHS414Q) /CSM/CH/CHS4-A/CHS414Q.Seq.d/                        920   0.0
CHE796 (CHE796Q) /CSM/CH/CHE7-D/CHE796Q.Seq.d/                        920   0.0
AHO142 (AHO142Q) /CSM/AH/AHO1-B/AHO142Q.Seq.d/                        920   0.0
AHN216 (AHN216Q) /CSM/AH/AHN2-A/AHN216Q.Seq.d/                        920   0.0
AHM267 (AHM267Q) /CSM/AH/AHM2-C/AHM267Q.Seq.d/                        920   0.0
CHI769 (CHI769Q) /CSM/CH/CHI7-C/CHI769Q.Seq.d/                        918   0.0
CHM706 (CHM706Q) /CSM/CH/CHM7-A/CHM706Q.Seq.d/                        916   0.0
CHI114 (CHI114Q) /CSM/CH/CHI1-A/CHI114Q.Seq.d/                        916   0.0
own update 2002.10. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.   920   0.0    3
AC118119|AC118119.6 Rattus norvegicus clone CH230-24J22, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    46   0.97   1
AC096421|AC096421.6 Rattus norvegicus clone CH230-36K20, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46   0.97   1
CR555306|CR555306.1 Azoarcus sp. EbN1 complete genome.             46   0.97   1
BX255879|BX255879.6 Zebrafish DNA sequence from clone CH211-232P17 in linkage group 18.    40   5.3    2
dna update 2005.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000155_6393(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    43   0.010
CP001186_779(CP001186|pid:none) Bacillus cereus G9842, complete ...    42   0.022
CR382133_545(CR382133|pid:none) Debaryomyces hansenii strain CBS...    37   0.41
CP000903_767(CP000903|pid:none) Bacillus weihenstephanensis KBAB...    37   0.53
CP000477_314(CP000477|pid:none) Methanosaeta thermophila PT, com...    37   0.53
CP000031_2174(CP000031|pid:none) Silicibacter pomeroyi DSS-3, co...    37   0.69
AE017194_956(AE017194|pid:none) Bacillus cereus ATCC 10987, comp...    35   1.5
T29158(T29158)hypothetical protein F39H12.1 - Caenorhabditis ele...    35   2.0
BA000045_2141(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ...    35   2.7
CP001147_466(CP001147|pid:none) Thermodesulfovibrio yellowstonii...    33   7.7
protein update 2009. 4.13
PSORT 

 psg: 0.95  gvh: 0.55  alm: 0.23  top: 0.97  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHS414 is nuc
5' end seq. ID CHS414F
5' end seq. 
>CHS414F.Seq
ATTATTTATTTAAAAAACAAATAATAAATTAATAAATAATATTTACACCAAACAATAACC
AAACGTCGAAAACGAAAAATCAATTTCAAAAAAAAATAATAATAATTGTTAAATAATTTT
ATAATATTAATTTTATTTTATTTTTATTTAATTTTTTAATTTGTATTATTAAAGTCACAC
ATATTAAAAAAAAAAAAAACCNNCCNGNAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 227
3' end seq. ID CHS414Z
3' end seq. 
>CHS414Z.Seq
NNNNNNNNNNTTCAAACACATAGAAGGTAAAGAGGGTTTGGTTAGTTTCCCATCCATTAT
TCCAGGTCATTATGAAGCTCGTCTCTTTAAGGATAAATATACTCTTATTCAAAAGTCTAG
CTCCATTCAAGTTGGTCCATCCGTTACTTTATCAGCTCATGTAATTGGTGATGAAATCTC
TGTCACCTATAAAGTAAACTCTGAAACTGGTGCCAACACTAAAGATTGGATCGGTATTTA
TCATCCAATTCAACGTAATAAACATTACATTGAGTCATTGTATGCTTCAACCTCTGGTAC
CATCACTTTCAAATCACCAAGAATACCAGGTCTCTATGAGATTCGTTACTTTTTACATCC
AACCAAATATAATGAACAAGCAAAGATCTCATTTGAAATCATTGATAACGATAAGATTCA
AGTCCTTAGTGAAAGTCAATCTTGTCTTACCCTCTCACCAGATCAAGAGTTTAG
Length of 3' end seq. 474
Connected seq. ID CHS414P
Connected seq. 
>CHS414P.Seq
ATTATTTATTTAAAAAACAAATAATAAATTAATAAATAATATTTACACCAAACAATAACC
AAACGTCGAAAACGAAAAATCAATTTCAAAAAAAAATAATAATAATTGTTAAATAATTTT
ATAATATTAATTTTATTTTATTTTTATTTAATTTTTTAATTTGTATTATTAAAGTCACAC
ATATTAAAAAAAAAAAAAACCNNCCNGNAAAAAAAAA----------TTCAAACACATAG
AAGGTAAAGAGGGTTTGGTTAGTTTCCCATCCATTATTCCAGGTCATTATGAAGCTCGTC
TCTTTAAGGATAAATATACTCTTATTCAAAAGTCTAGCTCCATTCAAGTTGGTCCATCCG
TTACTTTATCAGCTCATGTAATTGGTGATGAAATCTCTGTCACCTATAAAGTAAACTCTG
AAACTGGTGCCAACACTAAAGATTGGATCGGTATTTATCATCCAATTCAACGTAATAAAC
ATTACATTGAGTCATTGTATGCTTCAACCTCTGGTACCATCACTTTCAAATCACCAAGAA
TACCAGGTCTCTATGAGATTCGTTACTTTTTACATCCAACCAAATATAATGAACAAGCAA
AGATCTCATTTGAAATCATTGATAACGATAAGATTCAAGTCCTTAGTGAAAGTCAATCTT
GTCTTACCCTCTCACCAGATCAAGAGTTTAG
Length of connected seq. 681
Full length Seq ID -
Full length Seq. -
Length of full length seq. -