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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS412
Library CH
(Link to library)
Clone ID CHS412
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11295-1
Original site URL
Representative seq. ID CHS412P
(Link to Original site)
Representative DNA sequence 
>CHS412 (CHS412Q) /CSM/CH/CHS4-A/CHS412Q.Seq.d/
ATAATTGTGTAACATTGTATACTTACAAAAATAATAATAGAATAACTTAATTGTTTTTTT
TAATATATATTTAAATTAAGTCACATACAAAAATAAAATAAAAAAAAAAXXXXXXXXXXT
GTAATCATTTCAAATTATACTCAAACCTTGGAAGTATTGGCAACAATGTGTAAAACTNGT
GGTTACGCATACTTTCAATTGGATGGTTCGACAGCCAATGCTAAACGTCAACAATTGGTC
AATCTTTATAATGACCCAGCCAGACCAGAGTTTGTATTTCTTCTTAGTTCAAAAGCAGGT
GGTGTTGGTTTGAATCTTATTGGTGGTAATCATTTGGTTTTATTCGATGCAGATTGGAAT
CCAGCAAATGATGCCCAATNTATGGCTCGTGTTTGGAGAGAAGGTCAAAAAAAAATCGTA
TCCATTTATCGTACCTTTACAACTGGTACCATTGAAGAGAAAATCTTTCAAAGACAATTA
ACCAAACAAGCACTTTCAACAAGTATCACTGAAGGGGATTCTGATAATTCACCATCTTTT
GACTCAAAGGATTTAAAAGATATTGCAACATTTGTTTTTGTAAATGATAAAGGTCCAGTT
GATAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
*lcnivylqk***nnlivffniyln*VTYKNKIKKK---

---VIISNYTQTLEVLATMCKTXGYAYFQLDGSTANAKRQQLVNLYNDPARPEFVFLLSS
KAGGVGLNLIGGNHLVLFDADWNPANDAQXMARVWREGQKKIVSIYRTFTTGTIEEKIFQ
RQLTKQALSTSITEGDSDNSPSFDSKDLKDIATFVFVNDKGPVDK
Translated Amino Acid sequence (All Frames) 
Frame A:
iiv*hciltkiiie*lncff*yifklshiqk*nkkk---

---cnhfklysnlgsignnv*nxwlrilsigwfdsqc*tstigqsl**psqtrvciss*f
ksrwcwfesyww*sfgfircrlessk*cpxygsclerrskknrihlsylynwyh*renls
ktinqtstfnkyh*rgf**ftif*lkgfkrycnicfck**rss**

Frame B:
*lcnivylqk***nnlivffniyln*VTYKNKIKKK---

---VIISNYTQTLEVLATMCKTXGYAYFQLDGSTANAKRQQLVNLYNDPARPEFVFLLSS
KAGGVGLNLIGGNHLVLFDADWNPANDAQXMARVWREGQKKIVSIYRTFTTGTIEEKIFQ
RQLTKQALSTSITEGDSDNSPSFDSKDLKDIATFVFVNDKGPVDK

Frame C:
ncvtlytyknnnrit*lffliyi*ikshtkik*kk---

---*sfqiilkpwkywqqcvklvvthtfnwmvrqpmlnvnnwsifimtqpdqslyfflvq
kqvvlv*illvviiwfysmqigiqqmmpnxwlvfgekvkkksypfivplqlvplkrksfk
dn*pnkhfqqvslkgiliihhlltqri*kilqhlfl*mikvqlik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS412 (CHS412Q) /CSM/CH/CHS4-A/CHS412Q.Seq.d/                        902   0.0
AHO117 (AHO117Q) /CSM/AH/AHO1-A/AHO117Q.Seq.d/                        817   0.0
AHQ701 (AHQ701Q) /CSM/AH/AHQ7-A/AHQ701Q.Seq.d/                        801   0.0
AHJ236 (AHJ236Q) /CSM/AH/AHJ2-B/AHJ236Q.Seq.d/                        801   0.0
SHC737 (SHC737Q) /CSM/SH/SHC7-B/SHC737Q.Seq.d/                        714   0.0
SHB586 (SHB586Q) /CSM/SH/SHB5-D/SHB586Q.Seq.d/                        708   0.0
AHQ754 (AHQ754Q) /CSM/AH/AHQ7-C/AHQ754Q.Seq.d/                        698   0.0
CHH185 (CHH185Q) /CSM/CH/CHH1-D/CHH185Q.Seq.d/                        676   0.0
AHR333 (AHR333Q) /CSM/AH/AHR3-B/AHR333Q.Seq.d/                        620   e-177
AHH309 (AHH309Q) /CSM/AH/AHH3-A/AHH309Q.Seq.d/                        577   e-164
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AR549635|AR549635.1 Sequence 4766 from patent US 6747137.          58   1e-14  4
Z48618|Z48618.1 S.cerevisiae genes for RAD54, ACE1(CUP2), PMR1, RCK1, AMS1, DNA  helicase and tRNA-Leu.    50   3e-06  2
Z72685|Z72685.1 S.cerevisiae chromosome VII reading frame ORF YGL163c.    50   4e-06  2
M63232|M63232.1 Saccharomyces cerevisiae recombination and repair protein (RAD54) gene, complete cds.    50   4e-06  2
CK805260|CK805260.1 AGENCOURT_19147903 NICHD_XGC_Te2 Xenopus laevis cDNA clone IMAGE:7211199 5', mRNA sequence.    34   5e-06  3
DR846007|DR846007.1 JGI_CABE10681.fwd NIH_XGC_tropOva1 Xenopus tropicalis cDNA clone IMAGE:7828906 5', mRNA sequence.    34   5e-06  3
CX461692|CX461692.2 JGI_XZG24900.fwd NIH_XGC_tropGas7 Xenopus tropicalis cDNA clone IMAGE:7540284 5', mRNA sequence.    34   5e-06  3
AZ689825|AZ689825.1 ENTIW13TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   8e-04  2
BW325572|BW325572.1 Ciona intestinalis cDNA, clone:cidg822e02, 5'end, single read.    44   0.007  3
CR940347|CR940347.1 Theileria annulata genomic DNA chromosome 1 part 1.    34   0.029  2
dna update 2005.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM494961_78(AM494961|pid:none) Leishmania braziliensis chromosom...   188   8e-47
AB250666_1(AB250666|pid:none) Arabidopsis thaliana AtRAD54 mRNA ...   182   6e-45
AP000419_13(AP000419|pid:none) Arabidopsis thaliana genomic DNA,...   182   6e-45
BC067986_1(BC067986|pid:none) Xenopus tropicalis RAD54-like (S. ...   177   1e-43
FM992688_1248(FM992688|pid:none) Candida dubliniensis CD36 chrom...   176   6e-43
(O12944) RecName: Full=DNA repair and recombination protein RAD5...   175   7e-43
X97796_1(X97796|pid:none) M.musculus mRNA homologous to S. cerev...   175   7e-43
AK088876_1(AK088876|pid:none) Mus musculus 2 days neonate thymus...   175   7e-43
BC021643_1(BC021643|pid:none) Mus musculus RAD54 like (S. cerevi...   175   7e-43
(P70270) RecName: Full=DNA repair and recombination protein RAD5...   175   7e-43
protein update 2009. 4.13
PSORT 

 psg: 0.76  gvh: 0.37  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHS412 is cyt
5' end seq. ID CHS412F
5' end seq. 
>CHS412F.Seq
ATAATTGTGTAACATTGTATACTTACAAAAATAATAATAGAATAACTTAATTGTTTTTTT
TAATATATATTTAAATTAAGTCACATACAAAAATAAAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 119
3' end seq. ID CHS412Z
3' end seq. 
>CHS412Z.Seq
NNNNNNNNNNTGTAATCATTTCAAATTATACTCAAACCTTGGAAGTATTGGCAACAATGT
GTAAAACTNGTGGTTACGCATACTTTCAATTGGATGGTTCGACAGCCAATGCTAAACGTC
AACAATTGGTCAATCTTTATAATGACCCAGCCAGACCAGAGTTTGTATTTCTTCTTAGTT
CAAAAGCAGGTGGTGTTGGTTTGAATCTTATTGGTGGTAATCATTTGGTTTTATTCGATG
CAGATTGGAATCCAGCAAATGATGCCCAATNTATGGCTCGTGTTTGGAGAGAAGGTCAAA
AAAAAATCGTATCCATTTATCGTACCTTTACAACTGGTACCATTGAAGAGAAAATCTTTC
AAAGACAATTAACCAAACAAGCACTTTCAACAAGTATCACTGAAGGGGATTCTGATAATT
CACCATCTTTTGACTCAAAGGATTTAAAAGATATTGCAACATTTGTTTTTGTAAATGATA
AAGGTCCAGTTGATAAAA
Length of 3' end seq. 498
Connected seq. ID CHS412P
Connected seq. 
>CHS412P.Seq
ATAATTGTGTAACATTGTATACTTACAAAAATAATAATAGAATAACTTAATTGTTTTTTT
TAATATATATTTAAATTAAGTCACATACAAAAATAAAATAAAAAAAAAA----------T
GTAATCATTTCAAATTATACTCAAACCTTGGAAGTATTGGCAACAATGTGTAAAACTNGT
GGTTACGCATACTTTCAATTGGATGGTTCGACAGCCAATGCTAAACGTCAACAATTGGTC
AATCTTTATAATGACCCAGCCAGACCAGAGTTTGTATTTCTTCTTAGTTCAAAAGCAGGT
GGTGTTGGTTTGAATCTTATTGGTGGTAATCATTTGGTTTTATTCGATGCAGATTGGAAT
CCAGCAAATGATGCCCAATNTATGGCTCGTGTTTGGAGAGAAGGTCAAAAAAAAATCGTA
TCCATTTATCGTACCTTTACAACTGGTACCATTGAAGAGAAAATCTTTCAAAGACAATTA
ACCAAACAAGCACTTTCAACAAGTATCACTGAAGGGGATTCTGATAATTCACCATCTTTT
GACTCAAAGGATTTAAAAGATATTGCAACATTTGTTTTTGTAAATGATAAAGGTCCAGTT
GATAAAA
Length of connected seq. 597
Full length Seq ID -
Full length Seq. -
Length of full length seq. -