CHS408
Library CH
(Link to library)
Clone ID CHS408
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHS408P
(Link to Original site)
Representative DNA sequence
>CHS408 (CHS408Q) /CSM/CH/CHS4-A/CHS408Q.Seq.d/
TCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGTTGATTTGGGTTATGTTGAGCAA
ACTCAACCACCAACTCAACCACCTACTCAACCACCTACTCAACCACCAACACCTCCACCA
TTTACTGGTAGTGCCGTCGCTGGTTTATTATTTACCGATATCAATGGTAATGGAATTTTT
GATGGAAGAGATGTTTGGACATCAAATGTATCGGTTGGATTATATAATTTCAATGATAAA
ACCAGAGCACTCGATGTAAATGGTAATGTTATTTCATCAATTACTACCGATGCTAATGGT
AGATATGCATTTGAAAATGTTGCCAATGGTGTTTATTGTTTATGGATGGAAGGTACAAAA
TATTTCAATCCAGGTTGCGTTGGTAGAATTGAAATCAACTCTGCAACAATGCCAAAATCA
GTTGCATCAGATGGTGTTCAATCACCAACCATTTTAAGAGCTGGTTCATTTAGTCTTTTC
CTTACTGGTAATTCTGGATATGGTGGTTATGCATACAATGACATAGACCTCAATGGANNT
TTGAGTAGTAGAGATCAAGGTATCGCTGGTATTATTGTCAAGATTTACCTACCAGTTTAT
AATTTCCTCTTTGGAACCGTTACAACCGATTCAAXXXXXXXXXXTCCAGGTAATGGTAAT
TTCTTTGATAATCATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAAA
GGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCA
ATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACC
TCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATT
ACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATA
AATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTA
ATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTC
AAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAA
GCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGAT
GCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGT
GGTTATTATTTTAATGGTTGTTCATTTGGTATTATTCCAAAAAAATAAAATAATAAAAAA
ATATAAATAAATAAAAAAATAAAAAAATAAATAAAAAAATAAATAAAAATATAAATAAAT
AAATAAATAA
sequence update 2002.10.25
Translated Amino Acid sequence
SSGSSILTVRISVDLGYVEQTQPPTQPPTQPPTQPPTPPPFTGSAVAGLLFTDINGNGIF
DGRDVWTSNVSVGLYNFNDKTRALDVNGNVISSITTDANGRYAFENVANGVYCLWMEGTK
YFNPGCVGRIEINSATMPKSVASDGVQSPTILRAGSFSLFLTGNSGYGGYAYNDIDLNGX
LSSRDQGIAGIIVKIYLPVYNFLFGTVTTDS---

---PGNGNFFDNHKTGLHDYTNAFGATKGGRDIIVTTGFDYYEAFEGSIRWYNATSGKQL
KGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQYRVGRVWLDINGNGIQDAGEPG
ISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGSSITMRNADP
THPNTNSDAFLSTVDNVYVTSFTSSDAGGYYFNGCSFGIIPKK*nnkki*inkkikk*ik
k*iki*ink*i


Translated Amino Acid sequence (All Frames)
Frame A:
SSGSSILTVRISVDLGYVEQTQPPTQPPTQPPTQPPTPPPFTGSAVAGLLFTDINGNGIF
DGRDVWTSNVSVGLYNFNDKTRALDVNGNVISSITTDANGRYAFENVANGVYCLWMEGTK
YFNPGCVGRIEINSATMPKSVASDGVQSPTILRAGSFSLFLTGNSGYGGYAYNDIDLNGX
LSSRDQGIAGIIVKIYLPVYNFLFGTVTTDS---

---sr*w*fl**s*nrss*lyqcfwcn*rws*yycynwfrll*si*rfnslv*cnlw*tt
krllfiynlfkwsypisnlw*tkwsw*yyfsv*ffsstiscw*sla*ykw*wysrcw*tw
yfrnhsilnlwstinsnksncirfkwlfqi*s*fqfklllcnsccilpswffhynekc*s
nsskyk**cflinc**clchffyff*cwwllf*wlfiwyyskkik**knink*knkkink
kinknink*in

Frame B:
hqahlylqlelvliwvmlsklnhqlnhllnhllnhqhlhhllvvpslvyylpismvmefl
meemfghqmyrldyiismikpehsm*mvmlfhqllpmlmvdmhlkmlpmvfivygwkvqn
isiqvalvelkstlqqcqnqlhqmvfnhqpf*elvhlvfsllvildmvvmhtmt*tsmxx
*vveikvslvllsrftyqfiissleplqpiq---

---PGNGNFFDNHKTGLHDYTNAFGATKGGRDIIVTTGFDYYEAFEGSIRWYNATSGKQL
KGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQYRVGRVWLDINGNGIQDAGEPG
ISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGSSITMRNADP
THPNTNSDAFLSTVDNVYVTSFTSSDAGGYYFNGCSFGIIPKK*nnkki*inkkikk*ik
k*iki*ink*i

Frame C:
irliytys*n*c*fglc*ansttnsttysttysttntstiyw*crrwfiiyryqw*wnf*
wkrcldikcigwii*fq**nqstrckw*cyfinyyrc*w*ici*kccqwcllfmdgryki
fqsrlrw*n*nqlcnnakiscirwcsitnhfkswfi*sfpyw*fwiwwlciq*hrpqwxf
e**rsryrwyycqdlptsl*fplwnrynrf---

---qvmvisliiikqvfmtipmllvqlkvvvilllqlvsitmkhlkvqfvgimqplvnn*
kvtlyi*plqmvvphlqplvnkmvlvillqcmillfhnivlvefgli*mvmvfkmlvnlv
fqesqys*smvnnqlqqvklypiqmvisnlklisvqiiiv*fllhssklvlplq*emliq
liqiqivmlsyqllimfmsllllllmlvviilmvvhlvlfqknkiikkyk*ikk*knk*k
nk*kyk*ink*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHJ874 (SHJ874Q) /CSM/SH/SHJ8-D/SHJ874Q.Seq.d/ 1296 0.0
SHL852 (SHL852Q) /CSM/SH/SHL8-C/SHL852Q.Seq.d/ 1296 0.0
SHL833 (SHL833Q) /CSM/SH/SHL8-B/SHL833Q.Seq.d/ 1296 0.0
SHL807 (SHL807Q) /CSM/SH/SHL8-A/SHL807Q.Seq.d/ 1296 0.0
SHL804 (SHL804Q) /CSM/SH/SHL8-A/SHL804Q.Seq.d/ 1296 0.0
SHL785 (SHL785Q) /CSM/SH/SHL7-D/SHL785Q.Seq.d/ 1296 0.0
SHL727 (SHL727Q) /CSM/SH/SHL7-B/SHL727Q.Seq.d/ 1296 0.0
SHL696 (SHL696Q) /CSM/SH/SHL6-D/SHL696Q.Seq.d/ 1296 0.0
SHL664 (SHL664Q) /CSM/SH/SHL6-C/SHL664Q.Seq.d/ 1296 0.0
SHL586 (SHL586Q) /CSM/SH/SHL5-D/SHL586Q.Seq.d/ 1296 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BQ022375|BQ022375.1 UI-1-BB1p-akh-h-10-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA cloneUI-1-BB1p-akh-h-10-0-UI 3', mRNA sequence. 48 0.50 1
AC150654|AC150654.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094L06, complete sequence. 36 1.0 2
AC114012|AC114012.5 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079H11, complete sequence. 36 1.0 2
AC105770|AC105770.2 Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete sequence. 36 1.0 2
CV912682|CV912682.1 PF007G3 sporangia, cleaving Phytophthora infestans cDNA, mRNA sequence. 46 2.0 1
AC099203|AC099203.4 Rattus norvegicus clone CH230-126K21, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces. 46 2.0 1
AC099201|AC099201.6 Rattus norvegicus clone CH230-123L16, WORKING DRAFT SEQUENCE, 7 unordered pieces. 46 2.0 1
AC069411|AC069411.21 Homo sapiens 3 BAC RP11-609K13 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 42 2.1 3
AU304845|AU304845.1 Zinnia elegans cDNA, clone:Z13961. 40 3.9 2
AC092181|AC092181.9 Homo sapiens 3 BAC RP11-735O9 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 42 6.6 4
dna update 2005.11.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 92 3e-17
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 92 4e-17
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC... 88 6e-16
(Q9KI14) RecName: Full=Serine-aspartate repeat-containing protei... 84 1e-14
CP000686_1034(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 80 1e-13
(Q8NXX6) RecName: Full=Serine-aspartate repeat-containing protei... 80 2e-13
AM076227_1(AM076227|pid:none) Staphylococcus aureus partial sdrD... 79 3e-13
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei... 79 5e-13
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur... 79 5e-13
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD... 78 6e-13
protein update 2009. 4.13
PSORT

psg: 0.78 gvh: 0.53 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: mitochondrial
8.0 %: peroxisomal

>> prediction for CHS408 is cyt

5' end seq. ID CHS408F
5' end seq.
>CHS408F.Seq
TCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGTTGATTTGGGTTATGTTGAGCAA
ACTCAACCACCAACTCAACCACCTACTCAACCACCTACTCAACCACCAACACCTCCACCA
TTTACTGGTAGTGCCGTCGCTGGTTTATTATTTACCGATATCAATGGTAATGGAATTTTT
GATGGAAGAGATGTTTGGACATCAAATGTATCGGTTGGATTATATAATTTCAATGATAAA
ACCAGAGCACTCGATGTAAATGGTAATGTTATTTCATCAATTACTACCGATGCTAATGGT
AGATATGCATTTGAAAATGTTGCCAATGGTGTTTATTGTTTATGGATGGAAGGTACAAAA
TATTTCAATCCAGGTTGCGTTGGTAGAATTGAAATCAACTCTGCAACAATGCCAAAATCA
GTTGCATCAGATGGTGTTCAATCACCAACCATTTTAAGAGCTGGTTCATTTAGTCTTTTC
CTTACTGGTAATTCTGGATATGGTGGTTATGCATACAATGACATAGACCTCAATGGANNT
TTGAGTAGTAGAGATCAAGGTATCGCTGGTATTATTGTCAAGATTTACCTACCAGTTTAT
AATTTCCTCTTTGGAACCGTTACAACCGATTCAANNNNNNNNNN
Length of 5' end seq. 644
3' end seq. ID CHS408Z
3' end seq.
>CHS408Z.Seq
NNNNNNNNNNTCCAGGTAATGGTAATTTCTTTGATAATCATAAAACAGGTCTTCATGACT
ATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTGGTTTCG
ATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAACAAC
TAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTG
GTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATC
GTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTG
GTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAA
CTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATT
GTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATC
CAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCA
CTTCTTTTACTTCTTCTGATGCTGGTGGTTATTATTTTAATGGTTGTTCATTTGGTATTA
TTCCAAAAAAATAAAATAATAAAAAAATATAAATAAATAAAAAAATAAAAAAATAAATAA
AAAAATAAATAAAAATATAAATAAATAAATAAATAA
Length of 3' end seq. 756
Connected seq. ID CHS408P
Connected seq.
>CHS408P.Seq
TCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGTTGATTTGGGTTATGTTGAGCAA
ACTCAACCACCAACTCAACCACCTACTCAACCACCTACTCAACCACCAACACCTCCACCA
TTTACTGGTAGTGCCGTCGCTGGTTTATTATTTACCGATATCAATGGTAATGGAATTTTT
GATGGAAGAGATGTTTGGACATCAAATGTATCGGTTGGATTATATAATTTCAATGATAAA
ACCAGAGCACTCGATGTAAATGGTAATGTTATTTCATCAATTACTACCGATGCTAATGGT
AGATATGCATTTGAAAATGTTGCCAATGGTGTTTATTGTTTATGGATGGAAGGTACAAAA
TATTTCAATCCAGGTTGCGTTGGTAGAATTGAAATCAACTCTGCAACAATGCCAAAATCA
GTTGCATCAGATGGTGTTCAATCACCAACCATTTTAAGAGCTGGTTCATTTAGTCTTTTC
CTTACTGGTAATTCTGGATATGGTGGTTATGCATACAATGACATAGACCTCAATGGANNT
TTGAGTAGTAGAGATCAAGGTATCGCTGGTATTATTGTCAAGATTTACCTACCAGTTTAT
AATTTCCTCTTTGGAACCGTTACAACCGATTCAA----------TCCAGGTAATGGTAAT
TTCTTTGATAATCATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAAA
GGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCA
ATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACC
TCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATT
ACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATA
AATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTA
ATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTC
AAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAA
GCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGAT
GCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGT
GGTTATTATTTTAATGGTTGTTCATTTGGTATTATTCCAAAAAAATAAAATAATAAAAAA
ATATAAATAAATAAAAAAATAAAAAAATAAATAAAAAAATAAATAAAAATATAAATAAAT
AAATAAATAA
Length of connected seq. 1380
Full length Seq ID -
Full length Seq. -
Length of full length seq. -