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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS405
Library CH
(Link to library)
Clone ID CHS405
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11170-1
Original site URL
Representative seq. ID CHS405P
(Link to Original site)
Representative DNA sequence 
>CHS405 (CHS405Q) /CSM/CH/CHS4-A/CHS405Q.Seq.d/
AAATTAACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATATTTATT
TATTTATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTAGTATAA
AAAAAAAAXXXXXXXXXXAATGGTAATTCAAATGATTTATCATTTTTAGGTGGTGGTGGT
GGTGGTGGTGAAGTTCAAGCACCAGTTAATAAAGTTGTTGTATTTGGTGGTGATAGATCA
CAAGCAATTCAAATTAGTGGAGCATTTACAAGATTCCAAGGTAGAATTAATTTAGAATTA
AATCTTTTGAATACAAGTCAACAAGGTATGTCAAAATTCAAGATTCAATTTTATCAAAAT
AGTTTTGGTATTTCACCAGCTGATCAAATCTTATCATGTGGTGCTATTGAAGTAGGCCAA
AGCACTGATGTCACAATTCCAATCTCATGCAATGGTCAAATCTCAAATCCATTGAATCCA
GTCATTGATATGGCAATGATGGTATTACCAAGTCAAGAGAGATTCTACTTTAAGATGAAT
TTCCCATTACTTTGTCTATTGACAGAAACTGGTCGTCTCGATCGTGAATCTTATTTATCC
ATGTGGAAATCAATTCCAGAATCAAATGAACGTTCAGTTGAAATTCAAGTACGTTTACCA
CATGTAGATGTTGACTCTATCCTTCGTCGTTTAAATAGTAAGAATATCTTTGAAATCGTT
AGAAAGANAGCTCCNAATCAAGCAATCTCTTTCCTGTCTGTGTAGAANNGAAAGTTCTGT
CTTACATTATTAATTGAATTGNCTTTNNNCATTTCAACAAATACT
sequence update 2002.10.25
Translated Amino Acid sequence 
inthislky*ynpsrtyiylfiiff*EDYNTLLKCCISIKKK---

---NGNSNDLSFLGGGGGGGEVQAPVNKVVVFGGDRSQAIQISGAFTRFQGRINLELNLL
NTSQQGMSKFKIQFYQNSFGISPADQILSCGAIEVGQSTDVTIPISCNGQISNPLNPVID
MAMMVLPSQERFYFKMNFPLLCLLTETGRLDRESYLSMWKSIPESNERSVEIQVRLPHVD
VDSILRRLNSKNIFEIVRKXAPNQAISFLSV*xxkfcltllielxxxistnt
Translated Amino Acid sequence (All Frames) 
Frame A:
kltrtyh*niniihqelifiyl*yffkritihy*svvlv*kk---

---NGNSNDLSFLGGGGGGGEVQAPVNKVVVFGGDRSQAIQISGAFTRFQGRINLELNLL
NTSQQGMSKFKIQFYQNSFGISPADQILSCGAIEVGQSTDVTIPISCNGQISNPLNPVID
MAMMVLPSQERFYFKMNFPLLCLLTETGRLDRESYLSMWKSIPESNERSVEIQVRLPHVD
VDSILRRLNSKNIFEIVRKXAPNQAISFLSV*xxkfcltllielxxxistnt

Frame B:
n*hahiikili*siknlylfiyniflrglqytikvly*ykkk---

---mviqmiyhf*vvvvvvvkfkhqlikllylvvidhkqfklvehlqdskveli*n*if*
iqvnkvcqnsrfnfikivlvfhqliksyhvvllk*akalmsqfqshamvksqih*iqsli
wq*wyyqvkrdstlr*ishyfvy*qklvvsivnliypcgnqfqnqmnvqlkfkyvyhm*m
ltlsfvv*ivrislkslerxlxikqslsclcrxessvlhy*lnxlxxfqqi

Frame C:
inthislky*ynpsrtyiylfiiff*EDYNTLLKCCISIKKK---

---w*fk*fiifrwwwwww*sssts**scciww**itsnsn*wsiykipr*n*friksfe
ykstryvkiqdsilsk*fwyfts*snlimwcy*srpkh*chnsnlmqwsnlksiessh*y
gndgitksreill*defpitlsidrnwssrs*ilfihveinsrik*tfs*nsstfttcrc
*lypssfk**eyl*nr*kxssxssnlfpvcvexkvlsyiin*ixfxhfnky
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS405 (CHS405Q) /CSM/CH/CHS4-A/CHS405Q.Seq.d/                       1211   0.0
SHA785 (SHA785Q) /CSM/SH/SHA7-D/SHA785Q.Seq.d/                       1146   0.0
SHA570 (SHA570Q) /CSM/SH/SHA5-C/SHA570Q.Seq.d/                       1140   0.0
AHK359 (AHK359Q) /CSM/AH/AHK3-C/AHK359Q.Seq.d/                       1140   0.0
AHE651 (AHE651Q) /CSM/AH/AHE6-C/AHE651Q.Seq.d/                       1140   0.0
VHI676 (VHI676Q) /CSM/VH/VHI6-D/VHI676Q.Seq.d/                       1132   0.0
VFF468 (VFF468Q) /CSM/VF/VFF4-C/VFF468Q.Seq.d/                       1132   0.0
SHA168 (SHA168Q) /CSM/SH/SHA1-C/SHA168Q.Seq.d/                       1122   0.0
AHD474 (AHD474Q) /CSM/AH/AHD4-D/AHD474Q.Seq.d/                       1112   0.0
VHM880 (VHM880Q) /CSM/VH/VHM8-D/VHM880Q.Seq.d/                       1106   0.0
own update 2002.10. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC166018|AC166018.2 Oryctolagus cuniculus clone LB1-246C1, WORKING DRAFT SEQUENCE, 3 ordered pieces.    50   0.029  4
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence.    38   0.16   2
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    34   0.16   2
AC004709|AC004709.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    38   0.17   2
AL844152|AL844152.9 Zebrafish DNA sequence from clone DKEY-37L7.    34   0.17   2
AC006280|AC006280.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    38   0.17   2
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    38   0.24   6
BX901875|BX901875.9 Zebrafish DNA sequence from clone DKEY-183J10 in linkage group 18.    48   0.29   1
AL138729|AL138729.11 Human DNA sequence from clone RP1-172I22 on chromosome 6.    48   0.29   1
AC138054|AC138054.2 Felis catus clone RP86-462H21, WORKING DRAFT SEQUENCE, 3 ordered pieces.    38   0.54   4
dna update 2005.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54X82) RecName: Full=AP-1 complex subunit beta; AltName: Full=...   396   e-109
(P62944) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful...   109   1e-22
CR860139_1(CR860139|pid:none) Pongo abelii mRNA; cDNA DKFZp469O1...   109   1e-22
(Q08DS7) RecName: Full=AP-1 complex subunit beta-1; AltName: Ful...   109   1e-22
AY341427_1(AY341427|pid:none) Homo sapiens beta adaptin subunit ...   109   1e-22
(P63009) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful...   109   1e-22
BC012150_1(BC012150|pid:none) Homo sapiens, clone IMAGE:4558274,...   109   1e-22
AK304126_1(AK304126|pid:none) Homo sapiens cDNA FLJ55646 complet...   109   1e-22
CR749392_1(CR749392|pid:none) Homo sapiens mRNA; cDNA DKFZp781K0...   108   2e-22
AB462935_1(AB462935|pid:none) Synthetic construct DNA, clone: pF...   108   3e-22
protein update 2009. 4.13
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHS405 is cyt
5' end seq. ID CHS405F
5' end seq. 
>CHS405F.Seq
AAATTAACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATATTTATT
TATTTATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTAGTATAA
AAAAAAAANNNNNNNNNN
Length of 5' end seq. 138
3' end seq. ID CHS405Z
3' end seq. 
>CHS405Z.Seq
NNNNNNNNNNAATGGTAATTCAAATGATTTATCATTTTTAGGTGGTGGTGGTGGTGGTGG
TGAAGTTCAAGCACCAGTTAATAAAGTTGTTGTATTTGGTGGTGATAGATCACAAGCAAT
TCAAATTAGTGGAGCATTTACAAGATTCCAAGGTAGAATTAATTTAGAATTAAATCTTTT
GAATACAAGTCAACAAGGTATGTCAAAATTCAAGATTCAATTTTATCAAAATAGTTTTGG
TATTTCACCAGCTGATCAAATCTTATCATGTGGTGCTATTGAAGTAGGCCAAAGCACTGA
TGTCACAATTCCAATCTCATGCAATGGTCAAATCTCAAATCCATTGAATCCAGTCATTGA
TATGGCAATGATGGTATTACCAAGTCAAGAGAGATTCTACTTTAAGATGAATTTCCCATT
ACTTTGTCTATTGACAGAAACTGGTCGTCTCGATCGTGAATCTTATTTATCCATGTGGAA
ATCAATTCCAGAATCAAATGAACGTTCAGTTGAAATTCAAGTACGTTTACCACATGTAGA
TGTTGACTCTATCCTTCGTCGTTTAAATAGTAAGAATATCTTTGAAATCGTTAGAAAGAN
AGCTCCNAATCAAGCAATCTCTTTCCTGTCTGTGTAGAANNGAAAGTTCTGTCTTACATT
ATTAATTGAATTGNCTTTNNNCATTTCAACAAATACT
Length of 3' end seq. 697
Connected seq. ID CHS405P
Connected seq. 
>CHS405P.Seq
AAATTAACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATATTTATT
TATTTATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTAGTATAA
AAAAAAAA----------AATGGTAATTCAAATGATTTATCATTTTTAGGTGGTGGTGGT
GGTGGTGGTGAAGTTCAAGCACCAGTTAATAAAGTTGTTGTATTTGGTGGTGATAGATCA
CAAGCAATTCAAATTAGTGGAGCATTTACAAGATTCCAAGGTAGAATTAATTTAGAATTA
AATCTTTTGAATACAAGTCAACAAGGTATGTCAAAATTCAAGATTCAATTTTATCAAAAT
AGTTTTGGTATTTCACCAGCTGATCAAATCTTATCATGTGGTGCTATTGAAGTAGGCCAA
AGCACTGATGTCACAATTCCAATCTCATGCAATGGTCAAATCTCAAATCCATTGAATCCA
GTCATTGATATGGCAATGATGGTATTACCAAGTCAAGAGAGATTCTACTTTAAGATGAAT
TTCCCATTACTTTGTCTATTGACAGAAACTGGTCGTCTCGATCGTGAATCTTATTTATCC
ATGTGGAAATCAATTCCAGAATCAAATGAACGTTCAGTTGAAATTCAAGTACGTTTACCA
CATGTAGATGTTGACTCTATCCTTCGTCGTTTAAATAGTAAGAATATCTTTGAAATCGTT
AGAAAGANAGCTCCNAATCAAGCAATCTCTTTCCTGTCTGTGTAGAANNGAAAGTTCTGT
CTTACATTATTAATTGAATTGNCTTTNNNCATTTCAACAAATACT
Length of connected seq. 815
Full length Seq ID -
Full length Seq. -
Length of full length seq. -