NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS401
Library CH
(Link to library)
Clone ID CHS401
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10836-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHS401 (CHS401Q) /CSM/CH/CHS4-A/CHS401Q.Seq.d/
ATCATATATTATATAATTAACCCTATAAAATTTAATTACATGAAAAAATGAAATTAATTA
TTTTTATTATTTTTATATATTTATTTATTATTCCTATTTTTTCTCAACCAAACCCAAAAA
GTTTTTTAAATACAGATACAACAATTACATTTGAATGGAATTTAAATGATAATAATTATT
ATACAAAATGGATAATTATTAGACCCAATGATGCAAAATTAGAAATGCCATTTAATTGTG
TAAAAGGCGAAACATCATTAAAGTGTGTTTATACTAATTCCGACTCAACAGTTAATCAAT
TATATGGTAAAAATGTAACAGCATGTATTAATAGTTTAGGAGGTAATTGTGATACCCCAT
TAAGTCCACTTCATTATCCAACACCAATTTTAAAATCACCAATTCCAGAAATACCAGTTG
ATGGTGGTGAAGTTGTTATAACTGGTTCATTTTTAAAATTTGTAGAATCACCAAACTACT
ATGAAATTGTTGGAACTGAAAATAAAATTACATTTATTGATGATTTAACTAAACAAGAAT
TCAATCCAACAAATGTAACATTAAGATTCCCAAGTGGTTGTGGTTTAAATAAATCCCTAT
TATTACCAAATGACCAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
hilyn*pyki*LHEKMKLIIFIIFIYLFIIPIFSQPNPKSFLNTDTTITFEWNLNDNNYY
TKWIIIRPNDAKLEMPFNCVKGETSLKCVYTNSDSTVNQLYGKNVTACINSLGGNCDTPL
SPLHYPTPILKSPIPEIPVDGGEVVITGSFLKFVESPNYYEIVGTENKITFIDDLTKQEF
NPTNVTLRFPSGCGLNKSLLLPNDQ---
Translated Amino Acid sequence (All Frames) 
Frame A:
iiyyiinpikfnymkk*n*lfllflyiyllflfflnqtqkvf*iqiqqlhlngi*miiii
iqng*lldpmmqn*kchliv*kakhh*svfiliptqqlinymvkm*qhvliv*eviviph
*vhfiiqhqf*nhqfqkyqlmvvkll*lvhf*nl*nhqttmkllelkiklhllmi*lnkn
siqqm*h*dsqvvvv*inpyyyqmtk---


Frame B:
syii*ltl*nlit*kneinyfyyfyifiyysyffstkpkkffkyrynnyi*mefk***ll
ykmdny*tq*ckirnai*lckrrniikvcly*frlns*siiw*kcnsmy**frr*l*ypi
kstslsntnfkitnsrnts*ww*scynwfifkicritkll*ncwn*k*nyiy**fn*tri
qsnkcnikipkwlwfk*ipiitk*pk---


Frame C:
hilyn*pyki*LHEKMKLIIFIIFIYLFIIPIFSQPNPKSFLNTDTTITFEWNLNDNNYY
TKWIIIRPNDAKLEMPFNCVKGETSLKCVYTNSDSTVNQLYGKNVTACINSLGGNCDTPL
SPLHYPTPILKSPIPEIPVDGGEVVITGSFLKFVESPNYYEIVGTENKITFIDDLTKQEF
NPTNVTLRFPSGCGLNKSLLLPNDQ---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK574 (SHK574Q) /CSM/SH/SHK5-D/SHK574Q.Seq.d/                       1027   0.0
CHS401 (CHS401Q) /CSM/CH/CHS4-A/CHS401Q.Seq.d/                       1027   0.0
CFH409 (CFH409Q) /CSM/CF/CFH4-A/CFH409Q.Seq.d/                       1027   0.0
AHR295 (AHR295Q) /CSM/AH/AHR2-D/AHR295Q.Seq.d/                       1027   0.0
AHG714 (AHG714Q) /CSM/AH/AHG7-A/AHG714Q.Seq.d/                       1027   0.0
AHF486 (AHF486Q) /CSM/AH/AHF4-D/AHF486Q.Seq.d/                       1027   0.0
AHE483 (AHE483Q) /CSM/AH/AHE4-D/AHE483Q.Seq.d/                       1027   0.0
AHH241 (AHH241Q) /CSM/AH/AHH2-B/AHH241Q.Seq.d/                       1011   0.0
AHL726 (AHL726Q) /CSM/AH/AHL7-B/AHL726Q.Seq.d/                       1009   0.0
AHN857 (AHN857Q) /CSM/AH/AHN8-C/AHN857Q.Seq.d/                       1005   0.0
own update 2002.11.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.   991   0.0    3
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    60   3e-07  7
DV186526|DV186526.1 CT064_G07_CT064_3700_90.ab1 C. tentans tissue culture cDNA library Chironomus tentans cDNA, mRNA sequence.    50   0.056  1
DT612641|DT612641.1 ACAG-aaa14f10.g1 Hydra_EST_UCI-9 Hydra magnipapillata cDNA 5', mRNA sequence.    50   0.056  1
AE014818|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence.    30   0.073  11
CR933786|CR933786.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    42   0.087  5
AC136823|AC136823.2 Rattus norvegicus clone CH230-81M4, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    34   0.13   2
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           32   0.16   11
AC106707|AC106707.9 Homo sapiens 3 BAC RP11-538P18 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    36   0.25   8
AL357513|AL357513.8 Human DNA sequence from clone RP11-100A16 on chromosome 6 Contains  STSs and GSSs.    34   0.38   9
dna update 2005.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116100_1(AC116100|pid:none) Dictyostelium discoideum chromosom...   351   1e-95
AC115598_15(AC115598|pid:none) Dictyostelium discoideum chromoso...   119   9e-26
AC116956_73(AC116956|pid:none) Dictyostelium discoideum chromoso...    60   4e-08
FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS...    47   6e-04
FJ374943_1(FJ374943|pid:none) Dictyostelium discoideum strain QS...    47   6e-04
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS...    47   6e-04
FJ374945_1(FJ374945|pid:none) Dictyostelium discoideum strain QS...    47   6e-04
FJ374944_1(FJ374944|pid:none) Dictyostelium discoideum strain QS...    47   6e-04
FJ374949_1(FJ374949|pid:none) Dictyostelium discoideum strain QS...    47   6e-04
FJ374931_1(FJ374931|pid:none) Dictyostelium discoideum strain QS...    47   6e-04
protein update 2009. 4.13
PSORT 

 psg: 1.02  gvh: 0.70  alm: 0.46  top: 0.30  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: extracellular, including cell wall
	 20.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: nuclear
	  4.0 %: endoplasmic reticulum

>> prediction for CHS401 is exc
5' end seq. ID CHS401F
5' end seq. 
>CHS401F.Seq
ATCATATATTATATAATTAACCCTATAAAATTTAATTACATGAAAAAATGAAATTAATTA
TTTTTATTATTTTTATATATTTATTTATTATTCCTATTTTTTCTCAACCAAACCCAAAAA
GTTTTTTAAATACAGATACAACAATTACATTTGAATGGAATTTAAATGATAATAATTATT
ATACAAAATGGATAATTATTAGACCCAATGATGCAAAATTAGAAATGCCATTTAATTGTG
TAAAAGGCGAAACATCATTAAAGTGTGTTTATACTAATTCCGACTCAACAGTTAATCAAT
TATATGGTAAAAATGTAACAGCATGTATTAATAGTTTAGGAGGTAATTGTGATACCCCAT
TAAGTCCACTTCATTATCCAACACCAATTTTAAAATCACCAATTCCAGAAATACCAGTTG
ATGGTGGTGAAGTTGTTATAACTGGTTCATTTTTAAAATTTGTAGAATCACCAAACTACT
ATGAAATTGTTGGAACTGAAAATAAAATTACATTTATTGATGATTTAACTAAACAAGAAT
TCAATCCAACAAATGTAACATTAAGATTCCCAAGTGGTTGTGGTTTAAATAAATCCCTAT
TATTACCAAATGACCAAAAANNNNNNNNNN
Length of 5' end seq. 630
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -