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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS395
Library CH
(Link to library)
Clone ID CHS395
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16333-1
Original site URL
Representative seq. ID CHS395P
(Link to Original site)
Representative DNA sequence 
>CHS395 (CHS395Q) /CSM/CH/CHS3-D/CHS395Q.Seq.d/
GGAAATTTATTATTATTATCAATAATAATTTAATTTTTTTCAAAAAAAATAATAATAATA
ATAATAAAAATAATAAAAAAAATAAATATTAATAAATATTATTTAAAAATTTTATTTATA
GCAAAATAACTAATATATTGTAAAATAATTTTAGAATATTTAAAAAATATTCATATAATA
ATAAATAAAAATGAAAGAATATAAAAAAATTATATTATATAGTTTTTTAGTTTTTTTAAT
TTTATGTTTTGCAAAACCATCTCTTTCAGATGACCCTTTAACAACTTCAACAACAACAAC
AACAGCAACTGCACTACCAACGACATCGGCAGCATCAACAGCAAAGGTAACAACAACAAC
CACAACTACAGGATCACCAGCATCAACCACAACTACAGGAGCACCAACATCAACTACAGG
AGCATCAACATCAACTACAGGAGCACCATCATCATCATCTTCATCGAATGAAACAACTCC
AACTGCAACACCAACTAAAAAACCTGTAACACCAACACCATCATCAACATCATCATCATC
ATCATCATCTGAAGTAACATCATCCTCATCCGAATCATCAGCTGGTGAACATCCATGTGC
AACTGATGTTTTTGATAGTATGAGTAATTCTGGTAATTTCCAXXXXXXXXXXATGAATTT
TATGATCTAATCTATATGGATGATCTTTACTTTTCAAATGGTACGGTTTGTATGGAAGAG
TCATCGGAATATCCATACTATCAACTTGGTCAATTATTAAATGGTGCTTCCGATCAGTAT
AACNCTGGTAATGTAAATTTCAAATCCGTTAGTAAACTTTTTANAGGTTTTCCAACTATC
GAGTATCAATTATACAATAATTACAAAGCAATCATNTCAATGATGAATGGTACAATCGAT
ACATNTCAATATGATNTTTTGAGATTGAATTTNTTNTTCCTTCATGATCAATNTTATAAT
AATCCAAATCCAAGTATTGACTNTAGTGAAGTTGCAAACTNTTTCTTTTTAGATNTTCAA
ATTTGTATTACCGTTCAAGTGGTTGGTAATTTACCTTGTGTTGGTTTATCNCCATACTTG
GGTGGTCAAGTTCCAAATGCAGTATGGGTTGAACTTTTAATTCCTTTCTCTGATNTTCAA
GTTTATCCAAATGCTNTTATCAGTAGTATCACTTTCCAAACTCAAGTACAAGATCACCAA
GGTGTTTTNTTTATTGGTGATATTTCTGCTGGTAATTTTGTACCNCCATATAAAGTACTA
NAGGATGGTTCAAACGCTTTCAAATTATTATCAAATATTTATTTATTATTATTAATTTTT
ATAATTTCTTTATTATTTATCTAAACAAAAAAAAAACAAATAAATAAAAAACATA
sequence update 2002.10.25
Translated Amino Acid sequence 
eiyyyyq**fnffqkk******k**kk*ilinii*kfyl*qnn*yivk*f*ni*kifi**
*IKMKEYKKIILYSFLVFLILCFAKPSLSDDPLTTSTTTTTATALPTTSAASTAKVTTTT
TTTGSPASTTTTGAPTSTTGASTSTTGAPSSSSSSNETTPTATPTKKPVTPTPSSTSSSS
SSSEVTSSSSESSAGEHPCATDVFDSMSNSGNF---

---EFYDLIYMDDLYFSNGTVCMEESSEYPYYQLGQLLNGASDQYNXGNVNFKSVSKLFX
GFPTIEYQLYNNYKAIXSMMNGTIDTXQYDXLRLNXXFLHDQXYNNPNPSIDXSEVANXF
FLDXQICITVQVVGNLPCVGLSPYLGGQVPNAVWVELLIPFSDXQVYPNAXISSITFQTQ
VQDHQGVXFIGDISAGNFVPPYKVLXDGSNAFKLLSNIYLLLLIFIISLLFI*tkkkqin
kkh
Translated Amino Acid sequence (All Frames) 
Frame A:
gnllllsiii*ffskkiiiiiikiikkininkyylkilfiak*liyckiileylknihii
inkneri*knyii*ffsffnfmfcktisfr*pfnnfnnnnnsncttndigsinskgnnnn
hnyritsinhnyrstninyrsininyrstiiiifie*nnsncntn*ktcntntiiniiii
iii*sniiliriisw*tsmcn*cf**ye*fw*fp---

---mnfmi*siwmiftfqmvrfvwkshrnihtinlvny*mvlpisitlvm*isnplvnfl
xvfqlssinytiitkqsxq**mvqsihxnmxf*d*ixxsfminxiiiqiqvltxvklqtx
sf*xfkfvlpfkwlviylvlvyxhtwvvkfqmqyglnf*flslxfkfiqmllsvvslskl
kykitkvfxllvifllvilyxhikyxrmvqtlsnyyqifiyyy*fl*flyylskqkknk*
ikni

Frame B:
eiyyyyq**fnffqkk******k**kk*ilinii*kfyl*qnn*yivk*f*ni*kifi**
*IKMKEYKKIILYSFLVFLILCFAKPSLSDDPLTTSTTTTTATALPTTSAASTAKVTTTT
TTTGSPASTTTTGAPTSTTGASTSTTGAPSSSSSSNETTPTATPTKKPVTPTPSSTSSSS
SSSEVTSSSSESSAGEHPCATDVFDSMSNSGNF---

---*il*snlyg*sllfkwyglygrvigisilstwsiikwcfrsv*xw*ckfqir**tfx
rfsnyrvsiiq*lqsnhxndewynryxsi*xfeiefxxps*sxl**sksky*l**scklf
lfrxsnlyyrssgw*ftlcwfixilgwssskcsmg*tfnsfl*xsslskcxyq*yhfpns
strsprcfxyw*yfcw*fctxi*stxgwfkrfqiiikylfiiinfynffiiylnkkktnk
*kt

Frame C:
kfiiiinnnliffkknnnnnnknnkknky**ilfknfiyskitnil*nnfrifkkysynn
k*k*knikklyyivf*ff*fyvlqnhlfqmtl*qlqqqqqqqlhyqrhrqhqqqr*qqqp
qlqdhqhqpqlqehqhqlqehqhqlqehhhhhlhrmkqlqlqhqlknl*hqhhhqhhhhh
hhlk*hhphpnhqlvnihvqlmfliv*vilvis---

---EFYDLIYMDDLYFSNGTVCMEESSEYPYYQLGQLLNGASDQYNXGNVNFKSVSKLFX
GFPTIEYQLYNNYKAIXSMMNGTIDTXQYDXLRLNXXFLHDQXYNNPNPSIDXSEVANXF
FLDXQICITVQVVGNLPCVGLSPYLGGQVPNAVWVELLIPFSDXQVYPNAXISSITFQTQ
VQDHQGVXFIGDISAGNFVPPYKVLXDGSNAFKLLSNIYLLLLIFIISLLFI*tkkkqin
kkh
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS395 (CHS395Q) /CSM/CH/CHS3-D/CHS395Q.Seq.d/                       1189   0.0
CHI503 (CHI503Q) /CSM/CH/CHI5-A/CHI503Q.Seq.d/                       1106   0.0
CHS330 (CHS330Q) /CSM/CH/CHS3-B/CHS330Q.Seq.d/                       1094   0.0
AHM661 (AHM661Q) /CSM/AH/AHM6-C/AHM661Q.Seq.d/                       1074   0.0
CHR283 (CHR283Q) /CSM/CH/CHR2-D/CHR283Q.Seq.d/                       1057   0.0
SHJ588 (SHJ588Q) /CSM/SH/SHJ5-D/SHJ588Q.Seq.d/                       1039   0.0
AHM266 (AHM266Q) /CSM/AH/AHM2-C/AHM266Q.Seq.d/                       1039   0.0
CHM140 (CHM140Q) /CSM/CH/CHM1-B/CHM140Q.Seq.d/                       1027   0.0
SSJ359 (SSJ359Q) /CSM/SS/SSJ3-C/SSJ359Q.Seq.d/                       1025   0.0
CHR809 (CHR809Q) /CSM/CH/CHR8-A/CHR809Q.Seq.d/                        938   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    44   0.001  8
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    38   0.001  7
BX936298|BX936298.17 Zebrafish DNA sequence from clone DKEY-78L4 in linkage group 22.    42   0.003  4
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    44   0.004  5
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    40   0.005  2
AC126867|AC126867.4 Rattus norvegicus clone CH230-49B18, WORKING DRAFT SEQUENCE, 1 ordered piece.    54   0.008  1
AC095285|AC095285.5 Rattus norvegicus clone CH230-11A8, WORKING DRAFT SEQUENCE, 1 ordered piece.    54   0.008  1
CR391978|CR391978.12 Zebrafish DNA sequence from clone DKEY-252L8 in linkage group 1.    54   0.008  1
AC116921|AC116921.2 Dictyostelium discoideum chromosome 2 map 4624505-4657775 strain AX4, complete sequence.    32   0.022  7
BP663205|BP663205.1 Arabidopsis thaliana cDNA clone:RAFL21-47-C10, 3' end.    38   0.023  2
dna update 2005.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001055_503(CP001055|pid:none) Elusimicrobium minutum Pei191, c...    36   2.7
protein update 2008.11.10
PSORT 

 psg: 1.00  gvh: 0.82  alm: 0.19  top: 0.20  tms: 0.07  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 1.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for CHS395 is pla
5' end seq. ID CHS395F
5' end seq. 
>CHS395F.Seq
GGAAATTTATTATTATTATCAATAATAATTTAATTTTTTTCAAAAAAAATAATAATAATA
ATAATAAAAATAATAAAAAAAATAAATATTAATAAATATTATTTAAAAATTTTATTTATA
GCAAAATAACTAATATATTGTAAAATAATTTTAGAATATTTAAAAAATATTCATATAATA
ATAAATAAAAATGAAAGAATATAAAAAAATTATATTATATAGTTTTTTAGTTTTTTTAAT
TTTATGTTTTGCAAAACCATCTCTTTCAGATGACCCTTTAACAACTTCAACAACAACAAC
AACAGCAACTGCACTACCAACGACATCGGCAGCATCAACAGCAAAGGTAACAACAACAAC
CACAACTACAGGATCACCAGCATCAACCACAACTACAGGAGCACCAACATCAACTACAGG
AGCATCAACATCAACTACAGGAGCACCATCATCATCATCTTCATCGAATGAAACAACTCC
AACTGCAACACCAACTAAAAAACCTGTAACACCAACACCATCATCAACATCATCATCATC
ATCATCATCTGAAGTAACATCATCCTCATCCGAATCATCAGCTGGTGAACATCCATGTGC
AACTGATGTTTTTGATAGTATGAGTAATTCTGGTAATTTCCANNNNNNNNNN
Length of 5' end seq. 652
3' end seq. ID CHS395Z
3' end seq. 
>CHS395Z.Seq
NNNNNNNNNNATGAATTTTATGATCTAATCTATATGGATGATCTTTACTTTTCAAATGGT
ACGGTTTGTATGGAAGAGTCATCGGAATATCCATACTATCAACTTGGTCAATTATTAAAT
GGTGCTTCCGATCAGTATAACNCTGGTAATGTAAATTTCAAATCCGTTAGTAAACTTTTT
ANAGGTTTTCCAACTATCGAGTATCAATTATACAATAATTACAAAGCAATCATNTCAATG
ATGAATGGTACAATCGATACATNTCAATATGATNTTTTGAGATTGAATTTNTTNTTCCTT
CATGATCAATNTTATAATAATCCAAATCCAAGTATTGACTNTAGTGAAGTTGCAAACTNT
TTCTTTTTAGATNTTCAAATTTGTATTACCGTTCAAGTGGTTGGTAATTTACCTTGTGTT
GGTTTATCNCCATACTTGGGTGGTCAAGTTCCAAATGCAGTATGGGTTGAACTTTTAATT
CCTTTCTCTGATNTTCAAGTTTATCCAAATGCTNTTATCAGTAGTATCACTTTCCAAACT
CAAGTACAAGATCACCAAGGTGTTTTNTTTATTGGTGATATTTCTGCTGGTAATTTTGTA
CCNCCATATAAAGTACTANAGGATGGTTCAAACGCTTTCAAATTATTATCAAATATTTAT
TTATTATTATTAATTTTTATAATTTCTTTATTATTTATCTAAACAAAAAAAAAACAAATA
AATAAAAAACATA
Length of 3' end seq. 733
Connected seq. ID CHS395P
Connected seq. 
>CHS395P.Seq
GGAAATTTATTATTATTATCAATAATAATTTAATTTTTTTCAAAAAAAATAATAATAATA
ATAATAAAAATAATAAAAAAAATAAATATTAATAAATATTATTTAAAAATTTTATTTATA
GCAAAATAACTAATATATTGTAAAATAATTTTAGAATATTTAAAAAATATTCATATAATA
ATAAATAAAAATGAAAGAATATAAAAAAATTATATTATATAGTTTTTTAGTTTTTTTAAT
TTTATGTTTTGCAAAACCATCTCTTTCAGATGACCCTTTAACAACTTCAACAACAACAAC
AACAGCAACTGCACTACCAACGACATCGGCAGCATCAACAGCAAAGGTAACAACAACAAC
CACAACTACAGGATCACCAGCATCAACCACAACTACAGGAGCACCAACATCAACTACAGG
AGCATCAACATCAACTACAGGAGCACCATCATCATCATCTTCATCGAATGAAACAACTCC
AACTGCAACACCAACTAAAAAACCTGTAACACCAACACCATCATCAACATCATCATCATC
ATCATCATCTGAAGTAACATCATCCTCATCCGAATCATCAGCTGGTGAACATCCATGTGC
AACTGATGTTTTTGATAGTATGAGTAATTCTGGTAATTTCCA----------ATGAATTT
TATGATCTAATCTATATGGATGATCTTTACTTTTCAAATGGTACGGTTTGTATGGAAGAG
TCATCGGAATATCCATACTATCAACTTGGTCAATTATTAAATGGTGCTTCCGATCAGTAT
AACNCTGGTAATGTAAATTTCAAATCCGTTAGTAAACTTTTTANAGGTTTTCCAACTATC
GAGTATCAATTATACAATAATTACAAAGCAATCATNTCAATGATGAATGGTACAATCGAT
ACATNTCAATATGATNTTTTGAGATTGAATTTNTTNTTCCTTCATGATCAATNTTATAAT
AATCCAAATCCAAGTATTGACTNTAGTGAAGTTGCAAACTNTTTCTTTTTAGATNTTCAA
ATTTGTATTACCGTTCAAGTGGTTGGTAATTTACCTTGTGTTGGTTTATCNCCATACTTG
GGTGGTCAAGTTCCAAATGCAGTATGGGTTGAACTTTTAATTCCTTTCTCTGATNTTCAA
GTTTATCCAAATGCTNTTATCAGTAGTATCACTTTCCAAACTCAAGTACAAGATCACCAA
GGTGTTTTNTTTATTGGTGATATTTCTGCTGGTAATTTTGTACCNCCATATAAAGTACTA
NAGGATGGTTCAAACGCTTTCAAATTATTATCAAATATTTATTTATTATTATTAATTTTT
ATAATTTCTTTATTATTTATCTAAACAAAAAAAAAACAAATAAATAAAAAACATA
Length of connected seq. 1365
Full length Seq ID -
Full length Seq. -
Length of full length seq. -