>CHS394 (CHS394Q) /CSM/CH/CHS3-D/CHS394Q.Seq.d/
ATTGTAGAGTTTATCTCATTTTTGGGTTCAGCATTGCATTTGAATAACTTTACCAATCCA
TGTACTTTTGTTTTGGTGGTAACATTGGAACAAATCCTTGCCAAGAGAAGAAAGAAGCAT
CCAACCGTTATGATGTACGTTTGTACTTACAAAGAACCACCATCCATTGTATCACGTACT
TTTAGAACTGCAATCTCTATGGATTATCCAAGTGAAAACCTTTGGATTGGTTTATTGGAT
GATTCTGTAAATTATCGTGAATCAAGAGGTTGGGCACATCTTCAATCGGTTGAAAAGAAT
TTCCTTTATGTACTCTTACAANAGGCAGTTTATTCCGTTCACAATATTCGTCCACCTGTA
ACAAGTCAACATGAAGATCCACATGGTATTCTAAATGAAACCAGTTCAAAGATTGAATCC
TCAACAAAGGAAGTCATTGAAGCAGAGGTTCAATGGTTTATTGAATATTTCCTATTGAAT
TCATGGTTTGGTGTTGGTCAAGAGATTCCAAGAGATGCCGATGATGCTGAACGTGCTTTA
ATCGCTAAACTTCGTGATGATAATTTCTCACCATATCGTACATTCACAAAGAGTGAGAGT
GAAAAGATTTCCAACTTTACCATTGACTCCCTXXXXXXXXXXCTTCTCCATTAATTATGA
GTATTTGGACTGTACCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGTCGGTATGA
TTCCTGTAATGGTGTTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAAGAGACCTT
ATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCTG
AACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGGTTCCGCTT
CAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATGTGGAATT
GGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATTGG
TCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACAATCTTTCC
GTACTTCAAACAAAGAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCCAAATATTA
TCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAATTGTTTCC
AAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCATT
TATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAACAATGGCCATATGCTTCTT
CATACCATGCTCACAATATTGTTTTATTCTTGGTACTGGTTTCTGGTATTACTCTTTGTG
ATGTCAAAGTTTGATTCCTAG

IVEFISFLGSALHLNNFTNPCTFVLVVTLEQILAKRRKKHPTVMMYVCTYKEPPSIVSRT
FRTAISMDYPSENLWIGLLDDSVNYRESRGWAHLQSVEKNFLYVLLQXAVYSVHNIRPPV
TSQHEDPHGILNETSSKIESSTKEVIEAEVQWFIEYFLLNSWFGVGQEIPRDADDAERAL
IAKLRDDNFSPYRTFTKSESEKISNFTIDS---

---SPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWV
EATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVC
EVFRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMS
AVLRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVLFLV
LVSGITLCDVKV*fl

Frame A:
IVEFISFLGSALHLNNFTNPCTFVLVVTLEQILAKRRKKHPTVMMYVCTYKEPPSIVSRT
FRTAISMDYPSENLWIGLLDDSVNYRESRGWAHLQSVEKNFLYVLLQXAVYSVHNIRPPV
TSQHEDPHGILNETSSKIESSTKEVIEAEVQWFIEYFLLNSWFGVGQEIPRDADDAERAL
IAKLRDDNFSPYRTFTKSESEKISNFTIDS---

---llh*l*vfglyqsl*kiqsfsfssv*fl*wcyqesfni*fleprdlmkpvrvvhhfg
*kllifgelnklslvllvlifhhgekvplqslnflklerlvvis*pcgigreis*rnq*f
vkfsvklnwsmkmimlknqvvnirlnnlsvlqtknliplkiqdfsfqilssllliswl**
vlyldlivskmicgfwls*lvslslpygiyglsfqwlfvkvknnghmllhtmltilfysw
ywflvllfvmskfds*

Frame B:
l*slshfwvqhci*itlpihvllfww*hwnkslpreersiqpl*ctfvltknhhplyhvl
lelqslwiiqvktfglvywmil*iivnqevghifnrlkrisfmysyxrqfipftifvhl*
qvnmkihmvf*mkpvqrlnpqqrkslkqrfngllnisy*ihglvlvkrfqempmmlnvl*
slnfvmiishhivhsqrvrvkrfptlpltp---

---fsinyeyldctnrckrsnhfhsrrydscngvtkshsiyds*sqetl*sr*ewsitlg
rsy*sles*tnflwfcwylyfimerrfrfnr*ts*s*kd*ss*vshveleerfrketssl
*sfpsn*igq*k**csrikw*t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgyde
cct*i*lfpk*yvafgcrswflflylmafmvfhsngsssk*ktmaicffipcsqycfilg
tgfwyysl*cqslip

Frame C:
crvylifgfsiafe*lyqsmyfcfggnigtnpcqekkeasnrydvrlylqrttihcityf
*ncnlyglsk*kpldwfig*fckls*ikrlgtssig*kefplctltxgslfrsqysstcn
kst*rstwysk*nqfkd*ilnkgsh*srgsmvy*ifpiefmvwcwsrdskrcr*c*tcfn
r*ts***fltisyihke*e*kdfqlyh*lp---

---SPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWV
EATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVC
EVFRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMS
AVLRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVLFLV
LVSGITLCDVKV*fl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS394 (CHS394Q) /CSM/CH/CHS3-D/CHS394Q.Seq.d/                       2712   0.0
SHD746 (SHD746Q) /CSM/SH/SHD7-B/SHD746Q.Seq.d/                       1505   0.0
CHQ528 (CHQ528Q) /CSM/CH/CHQ5-B/CHQ528Q.Seq.d/                       1505   0.0
AHN472 (AHN472Q) /CSM/AH/AHN4-C/AHN472Q.Seq.d/                       1505   0.0
AHL670 (AHL670Q) /CSM/AH/AHL6-C/AHL670Q.Seq.d/                       1505   0.0
AHD708 (AHD708Q) /CSM/AH/AHD7-A/AHD708Q.Seq.d/                       1505   0.0
SHA730 (SHA730Q) /CSM/SH/SHA7-B/SHA730Q.Seq.d/                       1503   0.0
CFF112 (CFF112Q) /CSM/CF/CFF1-A/CFF112Q.Seq.d/                       1497   0.0
SHK186 (SHK186Q) /CSM/SH/SHK1-D/SHK186Q.Seq.d/                       1493   0.0
CHL344 (CHL344Q) /CSM/CH/CHL3-B/CHL344Q.Seq.d/                       1491   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds.  1417   0.0    3
AC132495|AC132495.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone P0695G07, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces.    34   3.5    4
CX655723|CX655723.1 PO02039A06 Poplar SC cDNA library Populus alba x Populus tremula var. glandulosa cDNA clone PO02039A06 5', mRNA sequence.    44   7.9    1
CX175850|CX175850.1 B04_69-65_04.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoides cDNA, mRNA sequence.    44   7.9    1
CJ352353|CJ352353.1 Molgula tectiformis cDNA, cleaving embryo clone:mtcl022l02, 5' end.    44   7.9    1
CJ395546|CJ395546.1 Molgula tectiformis cDNA, gonad clone:mtgd025l22, 5' end.    44   7.9    1
CA929806|CA929806.1 MTU2CA.P3.A01 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    44   7.9    1
CA929196|CA929196.1 MTU2CA.P10.C05 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    44   7.9    1
AC156264|AC156264.1 Takifugu rubripes, *** SEQUENCING IN PROGRESS ***, 10 ordered pieces.    44   7.9    1
AC152510|AC152510.3 Bos taurus clone CH240-16D7, WORKING DRAFT SEQUENCE, 24 unordered pieces.    44   7.9    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U...   484   e-135
CP000137_363(CP000137|pid:none) Rhizobium etli CFN 42 plasmid p4...    50   2e-04
CP001075_288(CP001075|pid:none) Rhizobium etli CIAT 652 plasmid ...    49   4e-04
CP000320_131(CP000320|pid:none) Nitrobacter hamburgensis X14 pla...    48   7e-04
CP000494_3389(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl...    47   0.002
CP001037_1366(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    47   0.002
CP001001_369(CP001001|pid:none) Methylobacterium radiotolerans J...    46   0.003
CP000951_2081(CP000951|pid:none) Synechococcus sp. PCC 7002, com...    44   0.013
CP001029_1254(CP001029|pid:none) Methylobacterium populi BJ001, ...    44   0.013
CP001298_1161(CP001298|pid:none) Methylobacterium chloromethanic...    44   0.017

 psg: 0.75  gvh: 0.60  alm: 0.23  top: 0.73  tms: 0.27  mit: 0.23  mip: 0.11
 nuc: 0.10  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 12.0 %: nuclear
	 12.0 %: vacuolar
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for CHS394 is end

>CHS394F.Seq
ATTGTAGAGTTTATCTCATTTTTGGGTTCAGCATTGCATTTGAATAACTTTACCAATCCA
TGTACTTTTGTTTTGGTGGTAACATTGGAACAAATCCTTGCCAAGAGAAGAAAGAAGCAT
CCAACCGTTATGATGTACGTTTGTACTTACAAAGAACCACCATCCATTGTATCACGTACT
TTTAGAACTGCAATCTCTATGGATTATCCAAGTGAAAACCTTTGGATTGGTTTATTGGAT
GATTCTGTAAATTATCGTGAATCAAGAGGTTGGGCACATCTTCAATCGGTTGAAAAGAAT
TTCCTTTATGTACTCTTACAANAGGCAGTTTATTCCGTTCACAATATTCGTCCACCTGTA
ACAAGTCAACATGAAGATCCACATGGTATTCTAAATGAAACCAGTTCAAAGATTGAATCC
TCAACAAAGGAAGTCATTGAAGCAGAGGTTCAATGGTTTATTGAATATTTCCTATTGAAT
TCATGGTTTGGTGTTGGTCAAGAGATTCCAAGAGATGCCGATGATGCTGAACGTGCTTTA
ATCGCTAAACTTCGTGATGATAATTTCTCACCATATCGTACATTCACAAAGAGTGAGAGT
GAAAAGATTTCCAACTTTACCATTGACTCCCTNNNNNNNNNN

>CHS394Z.Seq
NNNNNNNNNNCTTCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGAT
CCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAA
TATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGG
GTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTAT
ATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATT
AGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTT
TGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGT
GGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAA
AATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATG
AGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCT
GGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAA
AGTGAAAAACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTTATTCTTG
GTACTGGTTTCTGGTATTACTCTTTGTGATGTCAAAGTTTGATTCCTAG

>CHS394P.Seq
ATTGTAGAGTTTATCTCATTTTTGGGTTCAGCATTGCATTTGAATAACTTTACCAATCCA
TGTACTTTTGTTTTGGTGGTAACATTGGAACAAATCCTTGCCAAGAGAAGAAAGAAGCAT
CCAACCGTTATGATGTACGTTTGTACTTACAAAGAACCACCATCCATTGTATCACGTACT
TTTAGAACTGCAATCTCTATGGATTATCCAAGTGAAAACCTTTGGATTGGTTTATTGGAT
GATTCTGTAAATTATCGTGAATCAAGAGGTTGGGCACATCTTCAATCGGTTGAAAAGAAT
TTCCTTTATGTACTCTTACAANAGGCAGTTTATTCCGTTCACAATATTCGTCCACCTGTA
ACAAGTCAACATGAAGATCCACATGGTATTCTAAATGAAACCAGTTCAAAGATTGAATCC
TCAACAAAGGAAGTCATTGAAGCAGAGGTTCAATGGTTTATTGAATATTTCCTATTGAAT
TCATGGTTTGGTGTTGGTCAAGAGATTCCAAGAGATGCCGATGATGCTGAACGTGCTTTA
ATCGCTAAACTTCGTGATGATAATTTCTCACCATATCGTACATTCACAAAGAGTGAGAGT
GAAAAGATTTCCAACTTTACCATTGACTCCCT----------CTTCTCCATTAATTATGA
GTATTTGGACTGTACCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGTCGGTATGA
TTCCTGTAATGGTGTTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAAGAGACCTT
ATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCTG
AACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGGTTCCGCTT
CAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATGTGGAATT
GGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATTGG
TCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACAATCTTTCC
GTACTTCAAACAAAGAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCCAAATATTA
TCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAATTGTTTCC
AAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCATT
TATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAACAATGGCCATATGCTTCTT
CATACCATGCTCACAATATTGTTTTATTCTTGGTACTGGTTTCTGGTATTACTCTTTGTG
ATGTCAAAGTTTGATTCCTAG