CHS392
Library CH
(Link to library)
Clone ID CHS392
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10883-1
Original site URL
Representative seq. ID CHS392P
(Link to Original site)
Representative DNA sequence
>CHS392 (CHS392Q) /CSM/CH/CHS3-D/CHS392Q.Seq.d/
TTGAAATGTTATCACCATTAAAAAAGATTGAAAAACAAGAAAAGAATGATGGTGATAGAT
TTATTAAAGCATTATTAAATAAAACTCCAATTGCAGCTAAAACTGCCTATTCTATGAATG
TTAATGGTCAAACATCAGATACATTACATTCATCTAATAAATCAGAGAAACCAGTTGAAA
TGGTAAACATTTTTAAATATGGTTCAATCGATATAGATTTCACAGAGATATTTGGAGAGG
TTGAAGATCTTCAAGGTTTCATTATGTGGAAGGTGAATGGATTCTCTGTTGAGGAGAGAG
ATTTTGAGGATTATTGTACACTATATTCTAAAGATGCTTATTTAGTATTCAACGTCACTG
ATGATCCAAAGGATTCAGTTAACTCAATGTATAACATTCATCTATGGTATGGCAAAGACA
GTGGTATTGATAAGCGTTGCACTGCAGTCATGATGGCAATTCAATTGTTGACTCATTTAG
GTGGGAAATGTAATCAATTCGTAGAGGAGCAATCAAACGAGTCTTCAATGTTTTTAAATT
ATTTCATCAATCATCAAGAGTCGATGTTTGGGGTGAAACATAAGAATGGGGGATCAGAGT
GTGACTTCTTTTCAAGTAAATCCTATCTACAACAATATCAACGTAAATCXXXXXXXXXXT
CTTAAATCAACTGAATGTTGTTTATTAGATTCACCAGATGTTCTCTATGTTTGGGTTGGT
TCAAATTGTTCAGCTTCCTTGGAGAATATTGTACTTATCTTTGTTAATGACTATTGTAAC
TATTATAGTATCCCAATTGATTCCATTCAAAAGGTAGTTCAATACAATGAATCAATTGAA
TTCAAGTTAAGATTTAAAGCTTGGGATAGAAAAGAGGAATGGGTTGATCCTCATGAAACT
CGTCAATGCCAAGTTGCCCTACAAAGAACTTTACTCTTCCGTAAACAATATGAAGAGGAA
CAACAACTATTCAAAGAATATATGGACTATGCATATTCACTAGGTGATGAAGATGAATTG
GAAGACTTTGAAACTTGGACTCTCATTAAAAAAGGTTATCTAGATTATCATGGTGAATTA
AATCTAAGTTATAGTGATCAATTAAATGGTACTCTAAGTAGAAGTTTAAGTAATAGTAGT
AATGGTAGTAGTAATAGTAGTACTTCTCCAAATTTAAATGCTCATATCTCTTCTTCACCA
TCTTTATCAAATGGTAATCTTTATAATTATACAAATGGTAATGGTGGTAGTACAAAACCA
CCACTATCAAAAGATAGTCCTTCTTCACCACCAACTTTATCTCAACAACAACATACTAAA
AATAATGGTTTACCACCTTTACCAAAATCTTCAAAAAAGAAAAAATTCTTNGTTTATTTA
AAAAATAAA
sequence update 2002.10.25
Translated Amino Acid sequence
EMLSPLKKIEKQEKNDGDRFIKALLNKTPIAAKTAYSMNVNGQTSDTLHSSNKSEKPVEM
VNIFKYGSIDIDFTEIFGEVEDLQGFIMWKVNGFSVEERDFEDYCTLYSKDAYLVFNVTD
DPKDSVNSMYNIHLWYGKDSGIDKRCTAVMMAIQLLTHLGGKCNQFVEEQSNESSMFLNY
FINHQESMFGVKHKNGGSECDFFSSKSYLQQYQRK---

---LKSTECCLLDSPDVLYVWVGSNCSASLENIVLIFVNDYCNYYSIPIDSIQKVVQYNE
SIEFKLRFKAWDRKEEWVDPHETRQCQVALQRTLLFRKQYEEEQQLFKEYMDYAYSLGDE
DELEDFETWTLIKKGYLDYHGELNLSYSDQLNGTLSRSLSNSSNGSSNSSTSPNLNAHIS
SSPSLSNGNLYNYTNGNGGSTKPPLSKDSPSSPPTLSQQQHTKNNGLPPLPKSSKKKKFX
VYLKNK


Translated Amino Acid sequence (All Frames)
Frame A:
lkcyhh*krlknkkrmmvidllkhy*iklqlqlklpil*mlmvkhqihyihlinqrnqlk
w*tflnmvqsi*isqrylerlkifkvslcgr*mdsllrreilriivhyilkmli*ystsl
miqriqltqcitfiygmaktvvlisvalqs*wqfnc*li*vgnvins*rsnqtslqcf*i
issiiksrclg*nirmgdqsvtsfqvnpiynninvn---

---s*in*mlfirftrcslclgwfklfsflgeyctylc**ll*ll*ypn*fhskgssiq*
in*iqvki*slg*krgmg*ss*nssmpscptknftlp*ti*rgtttiqriyglciftr**
r*igrl*nldsh*krlsrlsw*ikskl**sikwysk*kfk****w*****yfskfkcsyl
fftifikw*sl*lykw*ww*yktttikr*sffttnfisttty*k*wfttftkifkkekil
xlfkk*

Frame B:
*nvitikkd*ktrke*w**iy*siik*nsncs*nclfyec*wsniryitfi**irets*n
gkhf*iwfnryrfhrdiwrg*rssrfhyvegewilc*gerf*gllytif*rclfsiqrh*
*skgfs*lnv*hssmvwqrqwy**alhcshdgnsivdsfrwem*sirrgaikrvfnvfkl
fhqssrvdvwget*ewgirv*llfk*ilsttist*i---

---LKSTECCLLDSPDVLYVWVGSNCSASLENIVLIFVNDYCNYYSIPIDSIQKVVQYNE
SIEFKLRFKAWDRKEEWVDPHETRQCQVALQRTLLFRKQYEEEQQLFKEYMDYAYSLGDE
DELEDFETWTLIKKGYLDYHGELNLSYSDQLNGTLSRSLSNSSNGSSNSSTSPNLNAHIS
SSPSLSNGNLYNYTNGNGGSTKPPLSKDSPSSPPTLSQQQHTKNNGLPPLPKSSKKKKFX
VYLKNK

Frame C:
EMLSPLKKIEKQEKNDGDRFIKALLNKTPIAAKTAYSMNVNGQTSDTLHSSNKSEKPVEM
VNIFKYGSIDIDFTEIFGEVEDLQGFIMWKVNGFSVEERDFEDYCTLYSKDAYLVFNVTD
DPKDSVNSMYNIHLWYGKDSGIDKRCTAVMMAIQLLTHLGGKCNQFVEEQSNESSMFLNY
FINHQESMFGVKHKNGGSECDFFSSKSYLQQYQRK---

---lnqlnvvy*ihqmfsmfglvqivqlpwrilylsllmtivtiivsqlipfkr*fntmn
qlnss*dlklgiekrnglilmklvnaklpykelyssvnnmkrnnnyskniwtmhih*vmk
mnwktlklglslkkvi*iimvn*i*vivin*mvl*vev*vivvmvvvivvllqi*mlisl
lhhlyqmvifiiiqmvmvvvqnhhyqkivllhhqlylnnnilkimvyhlyqnlqkrknsx
fi*ki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHS392 (CHS392Q) /CSM/CH/CHS3-D/CHS392Q.Seq.d/ 2173 0.0
CHS484 (CHS484Q) /CSM/CH/CHS4-D/CHS484Q.Seq.d/ 1199 0.0
SHF741 (SHF741Q) /CSM/SH/SHF7-B/SHF741Q.Seq.d/ 1092 0.0
SSG485 (SSG485Q) /CSM/SS/SSG4-D/SSG485Q.Seq.d/ 918 0.0
SHA688 (SHA688Q) /CSM/SH/SHA6-D/SHA688Q.Seq.d/ 918 0.0
CHR853 (CHR853Q) /CSM/CH/CHR8-C/CHR853Q.Seq.d/ 918 0.0
CFF766 (CFF766Q) /CSM/CF/CFF7-C/CFF766Q.Seq.d/ 918 0.0
AHM348 (AHM348Q) /CSM/AH/AHM3-B/AHM348Q.Seq.d/ 918 0.0
AHH412 (AHH412Q) /CSM/AH/AHH4-A/AHH412Q.Seq.d/ 918 0.0
CHH371 (CHH371Q) /CSM/CH/CHH3-C/CHH371Q.Seq.d/ 910 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AZ535285|AZ535285.1 ENTDC13TF Entamoeba histolytica Sheared DNA Entamoeba histolyticagenomic, genomic survey sequence. 48 0.003 2
AZ692694|AZ692694.1 ENTMF30TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 0.046 2
BH138171|BH138171.1 ENTPB81TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 0.050 2
AZ693505|AZ693505.1 ENTKL81TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 50 0.13 1
AZ687760|AZ687760.1 ENTMC70TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 50 0.13 1
DU050421|DU050421.1 145025 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0013G23 5, genomic survey sequence. 34 0.13 3
AQ579140|AQ579140.1 nbxb0096I13f CUGI Rice BAC Library Oryza sativa genomic clone nbxb0096I13f, genomic survey sequence. 38 0.49 2
BH935296|BH935296.1 ode75g01.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 48 0.50 1
BH475536|BH475536.1 BOHBA58TR BOHB Brassica oleracea genomic clone BOHBA58, DNA sequence. 48 0.50 1
BH161475|BH161475.1 ENTRR40TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 0.50 1
dna update 2005.11.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BX572629_4(BX572629|pid:none) Zebrafish DNA sequence from clone ... 66 6e-11
BX005064_2(BX005064|pid:none) Zebrafish DNA sequence from clone ... 66 6e-11
BC074175_1(BC074175|pid:none) Xenopus laevis MGC81993 protein, m... 62 5e-10
BC155581_1(BC155581|pid:none) Danio rerio scinderin like a, mRNA... 64 8e-10
BC125898_1(BC125898|pid:none) Danio rerio scinderin like a, mRNA... 64 8e-10
AF175294_1(AF175294|pid:none) Danio rerio gelsolin mRNA, complet... 64 8e-10
BC094991_1(BC094991|pid:none) Danio rerio scinderin like a, mRNA... 64 8e-10
AJ719674_1(AJ719674|pid:none) Gallus gallus mRNA for hypothetica... 67 2e-09
BC084059_1(BC084059|pid:none) Xenopus laevis gelsolin, mRNA (cDN... 65 5e-09
AJ621806_1(AJ621806|pid:none) Suberites ficus mRNA for gelsolin ... 64 1e-08
protein update 2009. 4.13
PSORT

psg: 0.18 gvh: 0.44 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.12 mip: 0.00
nuc: 0.07 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: mitochondrial

>> prediction for CHS392 is cyt

5' end seq. ID CHS392F
5' end seq.
>CHS392F.Seq
TTGAAATGTTATCACCATTAAAAAAGATTGAAAAACAAGAAAAGAATGATGGTGATAGAT
TTATTAAAGCATTATTAAATAAAACTCCAATTGCAGCTAAAACTGCCTATTCTATGAATG
TTAATGGTCAAACATCAGATACATTACATTCATCTAATAAATCAGAGAAACCAGTTGAAA
TGGTAAACATTTTTAAATATGGTTCAATCGATATAGATTTCACAGAGATATTTGGAGAGG
TTGAAGATCTTCAAGGTTTCATTATGTGGAAGGTGAATGGATTCTCTGTTGAGGAGAGAG
ATTTTGAGGATTATTGTACACTATATTCTAAAGATGCTTATTTAGTATTCAACGTCACTG
ATGATCCAAAGGATTCAGTTAACTCAATGTATAACATTCATCTATGGTATGGCAAAGACA
GTGGTATTGATAAGCGTTGCACTGCAGTCATGATGGCAATTCAATTGTTGACTCATTTAG
GTGGGAAATGTAATCAATTCGTAGAGGAGCAATCAAACGAGTCTTCAATGTTTTTAAATT
ATTTCATCAATCATCAAGAGTCGATGTTTGGGGTGAAACATAAGAATGGGGGATCAGAGT
GTGACTTCTTTTCAAGTAAATCCTATCTACAACAATATCAACGTAAATCNNNNNNNNNN
Length of 5' end seq. 659
3' end seq. ID CHS392Z
3' end seq.
>CHS392Z.Seq
NNNNNNNNNNTCTTAAATCAACTGAATGTTGTTTATTAGATTCACCAGATGTTCTCTATG
TTTGGGTTGGTTCAAATTGTTCAGCTTCCTTGGAGAATATTGTACTTATCTTTGTTAATG
ACTATTGTAACTATTATAGTATCCCAATTGATTCCATTCAAAAGGTAGTTCAATACAATG
AATCAATTGAATTCAAGTTAAGATTTAAAGCTTGGGATAGAAAAGAGGAATGGGTTGATC
CTCATGAAACTCGTCAATGCCAAGTTGCCCTACAAAGAACTTTACTCTTCCGTAAACAAT
ATGAAGAGGAACAACAACTATTCAAAGAATATATGGACTATGCATATTCACTAGGTGATG
AAGATGAATTGGAAGACTTTGAAACTTGGACTCTCATTAAAAAAGGTTATCTAGATTATC
ATGGTGAATTAAATCTAAGTTATAGTGATCAATTAAATGGTACTCTAAGTAGAAGTTTAA
GTAATAGTAGTAATGGTAGTAGTAATAGTAGTACTTCTCCAAATTTAAATGCTCATATCT
CTTCTTCACCATCTTTATCAAATGGTAATCTTTATAATTATACAAATGGTAATGGTGGTA
GTACAAAACCACCACTATCAAAAGATAGTCCTTCTTCACCACCAACTTTATCTCAACAAC
AACATACTAAAAATAATGGTTTACCACCTTTACCAAAATCTTCAAAAAAGAAAAAATTCT
TNGTTTATTTAAAAAATAAA
Length of 3' end seq. 740
Connected seq. ID CHS392P
Connected seq.
>CHS392P.Seq
TTGAAATGTTATCACCATTAAAAAAGATTGAAAAACAAGAAAAGAATGATGGTGATAGAT
TTATTAAAGCATTATTAAATAAAACTCCAATTGCAGCTAAAACTGCCTATTCTATGAATG
TTAATGGTCAAACATCAGATACATTACATTCATCTAATAAATCAGAGAAACCAGTTGAAA
TGGTAAACATTTTTAAATATGGTTCAATCGATATAGATTTCACAGAGATATTTGGAGAGG
TTGAAGATCTTCAAGGTTTCATTATGTGGAAGGTGAATGGATTCTCTGTTGAGGAGAGAG
ATTTTGAGGATTATTGTACACTATATTCTAAAGATGCTTATTTAGTATTCAACGTCACTG
ATGATCCAAAGGATTCAGTTAACTCAATGTATAACATTCATCTATGGTATGGCAAAGACA
GTGGTATTGATAAGCGTTGCACTGCAGTCATGATGGCAATTCAATTGTTGACTCATTTAG
GTGGGAAATGTAATCAATTCGTAGAGGAGCAATCAAACGAGTCTTCAATGTTTTTAAATT
ATTTCATCAATCATCAAGAGTCGATGTTTGGGGTGAAACATAAGAATGGGGGATCAGAGT
GTGACTTCTTTTCAAGTAAATCCTATCTACAACAATATCAACGTAAATC----------T
CTTAAATCAACTGAATGTTGTTTATTAGATTCACCAGATGTTCTCTATGTTTGGGTTGGT
TCAAATTGTTCAGCTTCCTTGGAGAATATTGTACTTATCTTTGTTAATGACTATTGTAAC
TATTATAGTATCCCAATTGATTCCATTCAAAAGGTAGTTCAATACAATGAATCAATTGAA
TTCAAGTTAAGATTTAAAGCTTGGGATAGAAAAGAGGAATGGGTTGATCCTCATGAAACT
CGTCAATGCCAAGTTGCCCTACAAAGAACTTTACTCTTCCGTAAACAATATGAAGAGGAA
CAACAACTATTCAAAGAATATATGGACTATGCATATTCACTAGGTGATGAAGATGAATTG
GAAGACTTTGAAACTTGGACTCTCATTAAAAAAGGTTATCTAGATTATCATGGTGAATTA
AATCTAAGTTATAGTGATCAATTAAATGGTACTCTAAGTAGAAGTTTAAGTAATAGTAGT
AATGGTAGTAGTAATAGTAGTACTTCTCCAAATTTAAATGCTCATATCTCTTCTTCACCA
TCTTTATCAAATGGTAATCTTTATAATTATACAAATGGTAATGGTGGTAGTACAAAACCA
CCACTATCAAAAGATAGTCCTTCTTCACCACCAACTTTATCTCAACAACAACATACTAAA
AATAATGGTTTACCACCTTTACCAAAATCTTCAAAAAAGAAAAAATTCTTNGTTTATTTA
AAAAATAAA
Length of connected seq. 1379
Full length Seq ID -
Full length Seq. -
Length of full length seq. -