CHS390
Library CH
(Link to library)
Clone ID CHS390
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16361-1
Original site URL
Representative seq. ID CHS390P
(Link to Original site)
Representative DNA sequence
>CHS390 (CHS390Q) /CSM/CH/CHS3-D/CHS390Q.Seq.d/
AGATAAAGAGTTGTCATCACAAAAGAAGAAACCATCATCAATGCAATTAAGTAAAAAGAA
ACATGTCGCCAAAGAAGATTCTGAAACATTAGAGACAATCATTGGTGAAGAGAAGAAGGA
GGTTGTATTTGAAGTTAAACCATACTTTTCTCATGCAATTCTTCAAGCAACCATGGCGGT
ATTTTTAATTTGGAATATTTTTTACTTTGCATATCGTGCCGGTTGGACAATGAATAGAAC
CGATTATATCACATTCTCTTATTCAATCCTTTTCATCATTGTAGAGTTTATCTCATTTTT
GGGTTCAGCATTGCATTTGAATAACTTTACCAATCCATGTACTTTTGTTTTGGTGGTAAC
ATTGGAACAAATCCTTGCCAAGAGAAGAAAGAAGCATCCAACCGTTATGATGTACGTTTG
TACTTACAAAGAACCACCATCCATTGTATCACGTACTTTTAGAACTGCAATCTCTATGGA
TTATCCAAGTGAAAACCTTTGGATTGGTTTATTGGATGATTCTGTAAATTATCGTGAATC
AAGAGGTTGGGCACATCTTCAATCGGTTGAAAAGAATTTCCTTTATGTACTCTTACAAAA
GGCAGTTTATTCCGTTCACAATATTCGTCCACCTGTAACAAGTCAACATGAXXXXXXXXX
XTCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGATCCAATCATTTT
CATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATATGATTCT
TAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTAC
TGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTCATCATG
GAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCATAA
GTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTTT
CCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAAACATAA
GGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAATTCAAGACT
TTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGTACT
TAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTT
CTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAACA
ATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTT
sequence update 2002.10.25
Translated Amino Acid sequence
DKELSSQKKKPSSMQLSKKKHVAKEDSETLETIIGEEKKEVVFEVKPYFSHAILQATMAV
FLIWNIFYFAYRAGWTMNRTDYITFSYSILFIIVEFISFLGSALHLNNFTNPCTFVLVVT
LEQILAKRRKKHPTVMMYVCTYKEPPSIVSRTFRTAISMDYPSENLWIGLLDDSVNYRES
RGWAHLQSVEKNFLYVLLQKAVYSVHNIRPPVTSQH---

---SPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWV
EATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVC
EVFRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMS
AVLRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIV


Translated Amino Acid sequence (All Frames)
Frame A:
r*rvvitkeetiinaik*ketcrqrrf*nirdnhw*reeggci*s*tilfscnsssnhgg
ifnleyfllciscrldne*nrlyhillfnpfhhcrvylifgfsiafe*lyqsmyfcfggn
igtnpcqekkeasnrydvrlylqrttihcityf*ncnlyglsk*kpldwfig*fckls*i
krlgtssig*kefplctltkgslfrsqysstcnkst*---

---SPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWV
EATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVC
EVFRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMS
AVLRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIV

Frame B:
DKELSSQKKKPSSMQLSKKKHVAKEDSETLETIIGEEKKEVVFEVKPYFSHAILQATMAV
FLIWNIFYFAYRAGWTMNRTDYITFSYSILFIIVEFISFLGSALHLNNFTNPCTFVLVVT
LEQILAKRRKKHPTVMMYVCTYKEPPSIVSRTFRTAISMDYPSENLWIGLLDDSVNYRES
RGWAHLQSVEKNFLYVLLQKAVYSVHNIRPPVTSQH---

---lh*l*vfglyqsl*kiqsfsfssv*fl*wcyqesfni*fleprdlmkpvrvvhhfg*
kllifgelnklslvllvlifhhgekvplqslnflklerlvvis*pcgigreis*rnq*fv
kfsvklnwsmkmimlknqvvnirlnnlsvlqtknliplkiqdfsfqilssllliswl**v
lyldlivskmicgfwls*lvslslpygiyglsfqwlfvkvknnghmllhtmltil

Frame C:
ikschhkrrnhhqcn*vkrnmspkkilkh*rqslvkrrrrlylklnhtflmqffkqpwry
f*fgifftlhivpvgq*iepiishsliqsfssl*slshfwvqhci*itlpihvllfww*h
wnkslpreersiqpl*ctfvltknhhplyhvllelqslwiiqvktfglvywmil*iivnq
evghifnrlkrisfmysykrqfipftifvhl*qvnm---

---sinyeyldctnrckrsnhfhsrrydscngvtkshsiyds*sqetl*sr*ewsitlgr
sy*sles*tnflwfcwylyfimerrfrfnr*ts*s*kd*ss*vshveleerfrketssl*
sfpsn*igq*k**csrikw*t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgydec
ct*i*lfpk*yvafgcrswflflylmafmvfhsngsssk*ktmaicffipcsqyc

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHK418 (SHK418Q) /CSM/SH/SHK4-A/SHK418Q.Seq.d/ 1386 0.0
SHG576 (SHG576Q) /CSM/SH/SHG5-D/SHG576Q.Seq.d/ 1386 0.0
SHG486 (SHG486Q) /CSM/SH/SHG4-D/SHG486Q.Seq.d/ 1386 0.0
SHG409 (SHG409Q) /CSM/SH/SHG4-A/SHG409Q.Seq.d/ 1386 0.0
SHG402 (SHG402Q) /CSM/SH/SHG4-A/SHG402Q.Seq.d/ 1386 0.0
SHD873 (SHD873Q) /CSM/SH/SHD8-D/SHD873Q.Seq.d/ 1386 0.0
SHD789 (SHD789Q) /CSM/SH/SHD7-D/SHD789Q.Seq.d/ 1386 0.0
SHD746 (SHD746Q) /CSM/SH/SHD7-B/SHD746Q.Seq.d/ 1386 0.0
SHD704 (SHD704Q) /CSM/SH/SHD7-A/SHD704Q.Seq.d/ 1386 0.0
SHD227 (SHD227Q) /CSM/SH/SHD2-B/SHD227Q.Seq.d/ 1386 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds. 1386 0.0 1
DV050416|DV050416.1 DAY35S_09_B18.x1 FH DAY35S Mus musculus cDNA clone DAY35S_09_B18 similar to Pituitary tumor-transforming 1, mRNA sequence. 46 1.9 1
AC019066|AC019066.6 Homo sapiens BAC clone RP11-164L4 from 7, complete sequence. 46 1.9 1
DE044898|DE044898.1 Oryzias latipes DNA, clone: ola1-008J14.R, genomic survey sequence. 32 5.0 2
DN571415|DN571415.1 92305936 Sea Urchin primary mesenchyme cell cDNA library Strongylocentrotus purpuratus cDNA clone PMCSPR2-173D19 3', mRNA sequence. 44 7.7 1
CX655723|CX655723.1 PO02039A06 Poplar SC cDNA library Populus alba x Populus tremula var. glandulosa cDNA clone PO02039A06 5', mRNA sequence. 44 7.7 1
CX175850|CX175850.1 B04_69-65_04.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoides cDNA, mRNA sequence. 44 7.7 1
CJ352353|CJ352353.1 Molgula tectiformis cDNA, cleaving embryo clone:mtcl022l02, 5' end. 44 7.7 1
CJ395546|CJ395546.1 Molgula tectiformis cDNA, gonad clone:mtgd025l22, 5' end. 44 7.7 1
CA929806|CA929806.1 MTU2CA.P3.A01 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence. 44 7.7 1
dna update 2005.11.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U... 475 e-132
CP001037_1366(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 55 7e-06
CP000494_3389(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 52 5e-05
CP000137_363(CP000137|pid:none) Rhizobium etli CFN 42 plasmid p4... 50 2e-04
CP001029_1254(CP001029|pid:none) Methylobacterium populi BJ001, ... 50 2e-04
CP001075_288(CP001075|pid:none) Rhizobium etli CIAT 652 plasmid ... 49 4e-04
CP000320_131(CP000320|pid:none) Nitrobacter hamburgensis X14 pla... 48 7e-04
CP000951_2081(CP000951|pid:none) Synechococcus sp. PCC 7002, com... 47 0.002
CP001001_369(CP001001|pid:none) Methylobacterium radiotolerans J... 46 0.003
CP001186_1574(CP001186|pid:none) Bacillus cereus G9842, complete... 46 0.003
protein update 2009. 4.13
PSORT

psg: 0.70 gvh: 0.37 alm: 0.23 top: 0.57 tms: 0.33 mit: 0.17 mip: 0.00
nuc: 0.16 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

44.0 %: plasma membrane
16.0 %: vacuolar
12.0 %: nuclear
12.0 %: endoplasmic reticulum
8.0 %: mitochondrial
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for CHS390 is pla

5' end seq. ID CHS390F
5' end seq.
>CHS390F.Seq
AGATAAAGAGTTGTCATCACAAAAGAAGAAACCATCATCAATGCAATTAAGTAAAAAGAA
ACATGTCGCCAAAGAAGATTCTGAAACATTAGAGACAATCATTGGTGAAGAGAAGAAGGA
GGTTGTATTTGAAGTTAAACCATACTTTTCTCATGCAATTCTTCAAGCAACCATGGCGGT
ATTTTTAATTTGGAATATTTTTTACTTTGCATATCGTGCCGGTTGGACAATGAATAGAAC
CGATTATATCACATTCTCTTATTCAATCCTTTTCATCATTGTAGAGTTTATCTCATTTTT
GGGTTCAGCATTGCATTTGAATAACTTTACCAATCCATGTACTTTTGTTTTGGTGGTAAC
ATTGGAACAAATCCTTGCCAAGAGAAGAAAGAAGCATCCAACCGTTATGATGTACGTTTG
TACTTACAAAGAACCACCATCCATTGTATCACGTACTTTTAGAACTGCAATCTCTATGGA
TTATCCAAGTGAAAACCTTTGGATTGGTTTATTGGATGATTCTGTAAATTATCGTGAATC
AAGAGGTTGGGCACATCTTCAATCGGTTGAAAAGAATTTCCTTTATGTACTCTTACAAAA
GGCAGTTTATTCCGTTCACAATATTCGTCCACCTGTAACAAGTCAACATGANNNNNNNNN
N
Length of 5' end seq. 661
3' end seq. ID CHS390Z
3' end seq.
>CHS390Z.Seq
NNNNNNNNNNTCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGATCC
AATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATA
TATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGT
AGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATAT
TTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAG
TCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTG
TGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGG
TAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAA
TTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAG
TGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGG
TTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAG
TGAAAAACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTT
Length of 3' end seq. 709
Connected seq. ID CHS390P
Connected seq.
>CHS390P.Seq
AGATAAAGAGTTGTCATCACAAAAGAAGAAACCATCATCAATGCAATTAAGTAAAAAGAA
ACATGTCGCCAAAGAAGATTCTGAAACATTAGAGACAATCATTGGTGAAGAGAAGAAGGA
GGTTGTATTTGAAGTTAAACCATACTTTTCTCATGCAATTCTTCAAGCAACCATGGCGGT
ATTTTTAATTTGGAATATTTTTTACTTTGCATATCGTGCCGGTTGGACAATGAATAGAAC
CGATTATATCACATTCTCTTATTCAATCCTTTTCATCATTGTAGAGTTTATCTCATTTTT
GGGTTCAGCATTGCATTTGAATAACTTTACCAATCCATGTACTTTTGTTTTGGTGGTAAC
ATTGGAACAAATCCTTGCCAAGAGAAGAAAGAAGCATCCAACCGTTATGATGTACGTTTG
TACTTACAAAGAACCACCATCCATTGTATCACGTACTTTTAGAACTGCAATCTCTATGGA
TTATCCAAGTGAAAACCTTTGGATTGGTTTATTGGATGATTCTGTAAATTATCGTGAATC
AAGAGGTTGGGCACATCTTCAATCGGTTGAAAAGAATTTCCTTTATGTACTCTTACAAAA
GGCAGTTTATTCCGTTCACAATATTCGTCCACCTGTAACAAGTCAACATGA---------
-TCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGATCCAATCATTTT
CATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATATGATTCT
TAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTAC
TGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTCATCATG
GAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCATAA
GTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTTT
CCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAAACATAA
GGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAATTCAAGACT
TTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGTACT
TAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTT
CTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAACA
ATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTT
Length of connected seq. 1350
Full length Seq ID -
Full length Seq. -
Length of full length seq. -