CHS385 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHS385
Library	CH (Link to library)
Clone ID	CHS385 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U10911-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHS3-D/CHS385Q.Seq.d/
Representative seq. ID	CHS385P (Link to Original site)
Representative DNA sequence	>CHS385 (CHS385Q) /CSM/CH/CHS3-D/CHS385Q.Seq.d/ AATTCACATAAAAAAAAGTCTTGTGAAAAACATTGTAATATTTATTTATTTATTTTATTT TATTTTATATATGTTATAAATTAAATGAATTTAAAATTTTCATTTTTTTTAATAGTTTTT ACTATTGTGCCAATATTTTGTCAAACATTTTTTCCAAAAGGATTTAGAAATACAGAAAAT TCAATTACATTTGATTGGGATTTAAATGATCCAAATTATTATACAAAATGGGAAATAACA AAAGCAGATGGTAATATAACTGAAATGAGTTTTCAATGTACGAATAATGCAACAATAAAA AGCTGTACATATACAAATAATGGAACACCACCAATGAATGAATTATATGGTATAAGTGGT ATGCCATGTTATATGGATGGCAGTAGTACTGAAAAATGTCAAGGAATATTACAACCATCA CATTATCCAACACCAATTATAAACTCAACAATACCTTCAATTCCAGTAGATGGTACATCA ATAACATTGGTTGGTTCATTTATTATATTTATAGTTGGTAATGATTCAAATTATTTTCAA CTTTCAAGTGGTGGTATAGCAAATTTCAATTCACCAATTCATTTGGATCCAACTCAAATG ATTATAAATATTCCATCAGGXXXXXXXXXXTTGCATCAAGGTGGTGTAGTATCAATCGAA TGTGGGAATAAGACATTCCCTAAATGTAATTTAATTGATTATANAACCATCTCTTGCCCA GTTCAATTAGATGGACCTTATGATCAATTTTGTACGGCTCACTTTTGAAAATAAGAACCA ATATACCAGTTTATGTTTCATTTCAACAACCAATAGCATTGGCTTCAAATTCTTTATATT TAGATGGTGGTGAATTGGTTATTTTTGGTGATTGTTTTTATGATATAACCGATAATATCC ATATTGGTCCTGTTCAATGTATTGATAGTAAATTCATATCTTCNAATGCAATCGCATGTA CACTACCACCCACCGCAGACAAACATCTATTGAATCAAATAATGTTTATAAATATTACTA TTGCTGGTAAAAGTGGTGGTGGATATGCTTTTTCCTATTTAACTCCATGGATTCAATTCG ACTCAACCTCCCNTACTGCAGATTCAATGATTATCATTACCACTATAATAATTGCATTTG CAATCGGCTCAATTTATATTCATTTCGCTATTCTATTTCATAAAAAGAAAAATATTAAAA GAGTTTTACCTTCAGGTGCTCCAAAACAAGTTGACCAACGAAGACAAT
sequence update	2002.10.25
Translated Amino Acid sequence	nshkkkscekhcniylfilfyfiyvinMNLKFSFFLIVFTIVPIFCQTFFPKGFRNTEN SITFDWDLNDPNYYTKWEITKADGNITEMSFQCTNNATIKSCTYTNNGTPPMNELYGISG MPCYMDGSSTEKCQGILQPSHYPTPIINSTIPSIPVDGTSITLVGSFIIFIVGNDSNYFQ LSSGGIANFNSPIHLDPTQMIINIPS--- ---LHQGGVVSIECGNKTFPKCNLIDYXTISCPVQLDGPYDQFCTAHFkepiyqfmfh fnnqhwlqilyimvvnwlflvivfmipiisilvlfnvlivnsylxmqshvhyhppqt niyikclillllvkvvvdmlfpilhgfnstqppxlqiqlslpl*lhlqsaqfif islfyfikrkilkefylqvlqnkltnedn
Translated Amino Acid sequence (All Frames)	Frame A: nshkkkscekhcniylfilfyfiyvinMNLKFSFFLIVFTIVPIFCQTFFPKGFRNTEN SITFDWDLNDPNYYTKWEITKADGNITEMSFQCTNNATIKSCTYTNNGTPPMNELYGISG MPCYMDGSSTEKCQGILQPSHYPTPIINSTIPSIPVDGTSITLVGSFIIFIVGNDSNYFQ LSSGGIANFNSPIHLDPTQMIINIPS--- ---LHQGGVVSIECGNKTFPKCNLIDYXTISCPVQLDGPYDQFCTAHFkepiyqfmfh fnnqhwlqilyimvvnwlflvivfmipiisilvlfnvlivnsylxmqshvhyhppqt niyikclillllvkvvvdmlfpilhgfnstqppxlqiqlslpllhlqsaqfif islfyfikrkilkefylqvlqnkltnedn Frame B: ihikkslvknivifiylfyfilymlikinfhff*flllcqyfvkhffqkdleiqki qlhligimiqiiiqngkqkqmvilkvfnvrimqqkavhiqimehhqmnymvvv chviwmavvlknvkeyynhhiiqhqltqqylqfqmvhqhwlvhllyllvmiqiifn fqvvvqisihqfiwiqlklifhq--- ---cikvvyqsnvgirhslnviliixpslaqfnmdlminfvrltfenknqytslcfi sttnsigfkffifrwwigyfwlflynrypywscsmy**ihifxcnrmyttthrrq tsiesnnvykyyycwkwwwicfflfnsmdsirlnlpycrfndyhyhynncicnrlnlys frysiskekyksftfrcsktsptkt Frame C: ftkkvlktlylfiyfilfyicyklnefkififfnsfyycanilsnifskrikyrkf nyilgfkskllykmgnnksrwynnefsmyecnnkklyiykwnttneiiwykwy amlygwqykmsrnittitlsntnyklnntfnssrwyinnigwfiyyiysw*fklfst fkwwyskfqftnsfgsnsndykysir--- ---asrwcsinrmwedipmfnlxnhllpssirwtlsilygsllkirtnipvyvsf qqpialasnslyldggelvifgdcfyditdnihigpvqcidskfissnaiactlpptadk hllnqimfinitiagksgggyafsyltpwiqfdstsxtadsmiiittiiiafaigsiyih failfhkkknikrvlpsgapkqvdqrrq
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHS385 (CHS385Q) /CSM/CH/CHS3-D/CHS385Q.Seq.d/ 2179 0.0 SHC427 (SHC427Q) /CSM/SH/SHC4-B/SHC427Q.Seq.d/ 1136 0.0 SFD615 (SFD615Q) /CSM/SF/SFD6-A/SFD615Q.Seq.d/ 1136 0.0 CHR524 (CHR524Q) /CSM/CH/CHR5-A/CHR524Q.Seq.d/ 1136 0.0 CHI460 (CHI460Q) /CSM/CH/CHI4-C/CHI460Q.Seq.d/ 1136 0.0 CHG851 (CHG851Q) /CSM/CH/CHG8-C/CHG851Q.Seq.d/ 1136 0.0 AHO706 (AHO706Q) /CSM/AH/AHO7-A/AHO706Q.Seq.d/ 1136 0.0 AHI392 (AHI392Q) /CSM/AH/AHI3-D/AHI392Q.Seq.d/ 1136 0.0 AHD113 (AHD113Q) /CSM/AH/AHD1-A/AHD113Q.Seq.d/ 1136 0.0 AHA142 (AHA142Q) /CSM/AH/AHA1-B/AHA142Q.Seq.d/ 1136 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC115598\|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 916 0.0 6 AC116100\|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence. 60 1e-11 6 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 0.002 20 CX617210\|CX617210.1 GABR1_32_H10.b1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_32_H10_A002 3', mRNA sequence. 52 0.029 1 CN143252\|CN143252.1 WOUND1_15_C04.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_15_C04_A002 3', mRNA sequence. 52 0.029 1 CN142951\|CN142951.1 WOUND1_13_G01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_13_G01_A002 3', mRNA sequence. 52 0.029 1 CN133792\|CN133792.1 OX1_18_H03.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_18_H03_A002 3', mRNA sequence. 52 0.029 1 CD432153\|CD432153.1 ETH1_26_E08.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_26_E08_A002 3', mRNA sequence. 52 0.029 1 AC117072\|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 34 0.055 10 AE014840\|AE014840.1 Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence. 38 0.23 9
dna update	2005.11.30
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC115598_15(AC115598\|pid:none) Dictyostelium discoideum chromoso... 296 3e-87 AC116100_1(AC116100\|pid:none) Dictyostelium discoideum chromosom... 89 4e-16 AC116956_73(AC116956\|pid:none) Dictyostelium discoideum chromoso... 54 2e-07 AC117076_23(AC117076\|pid:none) Dictyostelium discoideum chromoso... 35 4.0 (Q9TN87) RecName: Full=Maturase K; AltName: Full=Intron maturase... 35 6.9 AM285319_27(AM285319\|pid:none) Spiroplasma citri GII3-3X chromos... 34 9.0
protein update	2008.11.10
PSORT	psg: 1.00 gvh: 0.60 alm: 0.24 top: 0.33 tms: 0.13 mit: 0.31 mip: 0.06 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.30 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 1.00 m3b: 0.00 m_ : 0.00 32.0 %: endoplasmic reticulum 28.0 %: mitochondrial 12.0 %: plasma membrane 8.0 %: extracellular, including cell wall 4.0 %: Golgi 4.0 %: vacuolar 4.0 %: nuclear 4.0 %: vesicles of secretory system 4.0 %: cytoplasmic >> prediction for CHS385 is end
5' end seq. ID	CHS385F
5' end seq.	>CHS385F.Seq AATTCACATAAAAAAAAGTCTTGTGAAAAACATTGTAATATTTATTTATTTATTTTATTT TATTTTATATATGTTATAAATTAAATGAATTTAAAATTTTCATTTTTTTTAATAGTTTTT ACTATTGTGCCAATATTTTGTCAAACATTTTTTCCAAAAGGATTTAGAAATACAGAAAAT TCAATTACATTTGATTGGGATTTAAATGATCCAAATTATTATACAAAATGGGAAATAACA AAAGCAGATGGTAATATAACTGAAATGAGTTTTCAATGTACGAATAATGCAACAATAAAA AGCTGTACATATACAAATAATGGAACACCACCAATGAATGAATTATATGGTATAAGTGGT ATGCCATGTTATATGGATGGCAGTAGTACTGAAAAATGTCAAGGAATATTACAACCATCA CATTATCCAACACCAATTATAAACTCAACAATACCTTCAATTCCAGTAGATGGTACATCA ATAACATTGGTTGGTTCATTTATTATATTTATAGTTGGTAATGATTCAAATTATTTTCAA CTTTCAAGTGGTGGTATAGCAAATTTCAATTCACCAATTCATTTGGATCCAACTCAAATG ATTATAAATATTCCATCAGGNNNNNNNNNN
Length of 5' end seq.	630
3' end seq. ID	CHS385Z
3' end seq.	>CHS385Z.Seq NNNNNNNNNNTTGCATCAAGGTGGTGTAGTATCAATCGAATGTGGGAATAAGACATTCCC TAAATGTAATTTAATTGATTATANAACCATCTCTTGCCCAGTTCAATTAGATGGACCTTA TGATCAATTTTGTACGGCTCACTTTTGAAAATAAGAACCAATATACCAGTTTATGTTTCA TTTCAACAACCAATAGCATTGGCTTCAAATTCTTTATATTTAGATGGTGGTGAATTGGTT ATTTTTGGTGATTGTTTTTATGATATAACCGATAATATCCATATTGGTCCTGTTCAATGT ATTGATAGTAAATTCATATCTTCNAATGCAATCGCATGTACACTACCACCCACCGCAGAC AAACATCTATTGAATCAAATAATGTTTATAAATATTACTATTGCTGGTAAAAGTGGTGGT GGATATGCTTTTTCCTATTTAACTCCATGGATTCAATTCGACTCAACCTCCCNTACTGCA GATTCAATGATTATCATTACCACTATAATAATTGCATTTGCAATCGGCTCAATTTATATT CATTTCGCTATTCTATTTCATAAAAAGAAAAATATTAAAAGAGTTTTACCTTCAGGTGCT CCAAAACAAGTTGACCAACGAAGACAAT
Length of 3' end seq.	628
Connected seq. ID	CHS385P
Connected seq.	>CHS385P.Seq AATTCACATAAAAAAAAGTCTTGTGAAAAACATTGTAATATTTATTTATTTATTTTATTT TATTTTATATATGTTATAAATTAAATGAATTTAAAATTTTCATTTTTTTTAATAGTTTTT ACTATTGTGCCAATATTTTGTCAAACATTTTTTCCAAAAGGATTTAGAAATACAGAAAAT TCAATTACATTTGATTGGGATTTAAATGATCCAAATTATTATACAAAATGGGAAATAACA AAAGCAGATGGTAATATAACTGAAATGAGTTTTCAATGTACGAATAATGCAACAATAAAA AGCTGTACATATACAAATAATGGAACACCACCAATGAATGAATTATATGGTATAAGTGGT ATGCCATGTTATATGGATGGCAGTAGTACTGAAAAATGTCAAGGAATATTACAACCATCA CATTATCCAACACCAATTATAAACTCAACAATACCTTCAATTCCAGTAGATGGTACATCA ATAACATTGGTTGGTTCATTTATTATATTTATAGTTGGTAATGATTCAAATTATTTTCAA CTTTCAAGTGGTGGTATAGCAAATTTCAATTCACCAATTCATTTGGATCCAACTCAAATG ATTATAAATATTCCATCAGG----------TTGCATCAAGGTGGTGTAGTATCAATCGAA TGTGGGAATAAGACATTCCCTAAATGTAATTTAATTGATTATANAACCATCTCTTGCCCA GTTCAATTAGATGGACCTTATGATCAATTTTGTACGGCTCACTTTTGAAAATAAGAACCA ATATACCAGTTTATGTTTCATTTCAACAACCAATAGCATTGGCTTCAAATTCTTTATATT TAGATGGTGGTGAATTGGTTATTTTTGGTGATTGTTTTTATGATATAACCGATAATATCC ATATTGGTCCTGTTCAATGTATTGATAGTAAATTCATATCTTCNAATGCAATCGCATGTA CACTACCACCCACCGCAGACAAACATCTATTGAATCAAATAATGTTTATAAATATTACTA TTGCTGGTAAAAGTGGTGGTGGATATGCTTTTTCCTATTTAACTCCATGGATTCAATTCG ACTCAACCTCCCNTACTGCAGATTCAATGATTATCATTACCACTATAATAATTGCATTTG CAATCGGCTCAATTTATATTCATTTCGCTATTCTATTTCATAAAAAGAAAAATATTAAAA GAGTTTTACCTTCAGGTGCTCCAAAACAAGTTGACCAACGAAGACAAT
Length of connected seq.	1238
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas